/iacl/cruise08/bennett/kwyjibo/T1-proc20244file:/iacl/cruise08/bennett/kwyjibo/T1-proc/falsexmlT1 : Double Angle70.0150.0353.0434.0353.0434.0150.070.0UNKNOWNBennett Landmanlandman@jhu.edu1.1 Estimate T1 from a double flip-angle experiment. Uses direct calculation.http://www.nitrc.org/projects/jistJohns Hopkins University, Department of Biomedical EngineeringT1 : Double Angleedu.jhu.ece.iacl.plugins.quantitative.EstimateT1FromDoubleAngletrueAlgorithm Informationfalsetrue-1-1-11tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16FILELow Angle Volume (3D)falsetrue-1-1-1-1tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16trueRegistered VolumesfalsetrueOARLinearRegistration1.270.0266.0131.0293.0131.0293.0266.070.0Bjórn Hamre "Three-dimensional image registration of magnetic resonance (MRI) head volumes" Section for Medical Image Analysis and Informatics Department of Physiology & Department of Informatics University of Bergen, Norway. FLIRT, at http://www.fmrib.ox.ac.uk/fsl/flirt/ Powell method to find the global minimum: http://math.fullerton.edu/ mathews/n2003/PowellMethodMod.html 1.2Linear Registration algorithm based on FLIRT. Finds a linear transformation bringing the source volume into the space of the target volume. Degrees of freedom can be specified.OARLinearRegistration1.2edu.jhu.ece.iacl.plugins.registration.MedicAlgorithmFLIRTCollectiontrueAlgorithm Informationfalsetrue-1-1-1-1tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16trueSource Volumesfalsetrue-1-1-11tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16Volumefalsetruecsvtxt0file:/iacl/cruise08/kwyjibo/raw/T1_15.txtList Filefalsetrue001000000Offset Indexfalsetrue00100000Start Entryfalsetrue-1-1100000End Entryfalsetruevollist70.0150.064.096.064.096.0150.070.0VolumeBasevollistfalsetrueBasevollistfalsetrue-1-1-1-11tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16Target volumefalsetrue-1-1-11tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16Volumefalsetruefile:/iacl/cruise08/kwyjibo/raw/T1_60.txtList Filefalsetrue001000000Offset Indexfalsetrue00100000Start Entryfalsetrue-1-1100000End Entryfalsetruevollist70.0150.0361.026.0361.026.0150.070.0VolumeBasevollistfalsetrueBasevollistfalsetrue-1-1-11tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16Target volumefalsetrueOARLinearRegistration1.270.0266.0553.0292.0553.0292.0266.070.0Algorithm Informationfalsetrue-1-1-1-1tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16trueSource Volumesfalsetrue-1-1-11tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16Volumefalsetruefile:/iacl/cruise08/kwyjibo/raw/T1_60.txtList Filefalsetrue001000000Offset Indexfalsetrue00100000Start Entryfalsetrue-1-1100000End Entryfalsetruevollist70.0150.0380.0204.0380.0204.0150.070.0VolumeBasevollistfalsetrueBasevollistfalsetrue-1-1-1-11tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16Reference Weighted volumefalsefalse-1-1-11tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16Input Weighted volumefalsefalseRigid - 6Global rescale - 7Specific rescale - 9Affine - 120Degrees of freedomfalsetrueCorrelation ratioLeast squaresNormalized cross correlationNormalized mutual information2Cost functionfalsetrueTrilinearBspline 3rd orderBspline 4th orderCubic LagrangianQuintic LagrangianHeptic LagrangianWindowed sinc1Registration interpolationfalsetrueTrilinearBspline 3rd orderBspline 4th orderCubic LagrangianQuintic LagrangianHeptic LagrangianWindowed sincNearest Neighbor1Output interpolationfalsetrueAllXYZ0Apply rotationfalsetrue-30.0-360.0360.0Minimum anglefalsetrue30.0-360.0360.0Maximum anglefalsetrue15.00.0360.0Coarse angle incrementfalsetrue6.00.0360.0Fine angle incrementfalsetrue10-10000000001000000000Multiple of tolerance to bracket the minimumfalsetrue2-10000000001000000000Number of iterationsfalsetrue3-10000000001000000000Number of minima from Level 8 to test at Level 4falsetruetrueUse the max of the min resolutions of the two datasets when resamplingfalsetruetrueSubsample image for speedfalsetruefalseSkip multilevel search (Assume images are close to alignment)falsetrue0.00.00.00.00.00.00.00.00.00.00.00.00.00.00.00.04444Transformation Matrixfalsefalsetxtcsvxfm0Transformation Matricesfalsefalsetruemtxxfm0Transformationsfalsetrue-1-1-1-1tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16trueRegistered Volumesfalsetrue-1-1-11tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16High Angle Volume (3D)falsetrue0Execution Timefalsetrueedu.jhu.ece.iacl.plugins.registration.MedicAlgorithmFLIRTCollection1.14d373aa1-3650-4862-ae4b-450e6be9ec82AlgorithmtruetrueBaseMainfalsetrueBaseAdvancedfalsetrueRegistrationIACLOARLinearRegistration1.2falsetrueedu.jhu.ece.iacl.plugins.registration.MedicAlgorithmFLIRTCollection1.19c3a5edd-c7eb-4396-9b9c-f21349b0dc04AlgorithmtruetrueBaseOARLinearRegistration1.2falsetrue-1-1-1-1-11tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16Reference Weighted volumefalsefalse-1-1-11tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16Input Weighted volumefalsefalseRigid - 6Global rescale - 7Specific rescale - 9Affine - 120Degrees of freedomfalsetrueCorrelation ratioLeast squaresNormalized cross correlationNormalized mutual information2Cost functionfalsetrueTrilinearBspline 3rd orderBspline 4th orderCubic LagrangianQuintic LagrangianHeptic LagrangianWindowed sinc1Registration interpolationfalsetrueTrilinearBspline 3rd orderBspline 4th orderCubic LagrangianQuintic LagrangianHeptic LagrangianWindowed sincNearest Neighbor1Output interpolationfalsetrueAllXYZ0Apply rotationfalsetrue-30.0-360.0360.0Minimum anglefalsetrue30.0-360.0360.0Maximum anglefalsetrue15.00.0360.0Coarse angle incrementfalsetrue6.00.0360.0Fine angle incrementfalsetrue10-10000000001000000000Multiple of tolerance to bracket the minimumfalsetrue2-10000000001000000000Number of iterationsfalsetrue3-10000000001000000000Number of minima from Level 8 to test at Level 4falsetruetrueUse the max of the min resolutions of the two datasets when resamplingfalsetruetrueSubsample image for speedfalsetruefalseSkip multilevel search (Assume images are close to alignment)falsetrue0.00.00.00.00.00.00.00.00.00.00.00.00.00.00.00.04444Transformation Matrixfalsefalsetxtcsvxfm0Transformation Matricesfalsefalsetruemtxxfm0TransformationsfalsetrueExecution Timefalsetrueedu.jhu.ece.iacl.plugins.registration.MedicAlgorithmFLIRTCollection1.1091e56d4-e549-4224-a946-dd04a46603c9AlgorithmtruetrueBaseMainfalsetrueBaseAdvancedfalsetrueRegistrationIACLOARLinearRegistration1.2falsetrueedu.jhu.ece.iacl.plugins.registration.MedicAlgorithmFLIRTCollection1.1d28e14e2-5f66-415f-81f4-d4298cec0b90AlgorithmtruetrueBaseOARLinearRegistration1.2falsetrue015.0-1.0E201.0E20Low Flip Angle (deg)falsetrue60.0-1.0E201.0E20High Flip Angle (deg)falsetrue100.0-1.0E201.0E20Repetition Time (TR, ms)falsetrue-1-1-11FLOATtiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16T1EstfalsetrueBaseParametersfalsetruecsvtxt0Summary Filefalsetruecopy_summaryFile Namefalsetrue0DIRECTORYfile:/iacl/cruise08/bennett/kwyjibo/quantitative/Destination DirectoryfalsefalsetrueAppend Experiment Namefalsetruecopy70.0150.0338.0560.0338.0560.0150.070.0OutputBasecopyfalsetrueBasecopyfalsetrue-1Execution Timefalsetrueedu.jhu.ece.iacl.plugins.quantitative.EstimateT1FromDoubleAngle1.1b93de4de-127f-472d-add1-f05354154f85AlgorithmtruetrueQuantitativeIACLT1 : Double Anglefalsetrueedu.jhu.ece.iacl.plugins.quantitative.EstimateT1FromDoubleAngle1.132c4379d-eb06-4a6b-95f9-a9b848ca88c3AlgorithmtruetrueBaseT1 : Double Anglefalsetrue