/home/bennett/temp/RESTORE9952file:/home/bennett/temp/RESTORE/falsexmlDWI: Define Camino Scheme70.0150.0290.0161.0290.0161.0150.070.0UNKNOWNhttp://sites.google.com/site/bennettlandman/Bennett Landmanlandman@jhu.edu1.1.1.1 Creates a scheme definition file.The scheme file represents the diffusion weighting experiment that has been carried out.Reference images are indicated by b=0 s/mm2, and may occur at any time during the sequence.http://sites.google.com/site/jhupami/Computer Science Department - University College LondonDWI: Define Camino Schemeedu.jhu.ece.iacl.plugins.dti.DWIDefineCaminoSchemetrueAlgorithm Informationfalsetruegraddpf0FILE/home/bennett/Desktop/RESTORE-test/grads.dpfTable of diffusion weighting directions (normalized to 1)falsetrueb0/home/bennett/Desktop/RESTORE-test/bs.bTable of b-values (s/mm^2)falsetruebigDeltatxt0/home/bennett/Desktop/RESTORE-test/bigDelta.txtbig delta (diffusion time - s: either scalar or list)falsetruesmallDeltatxt0/home/bennett/Desktop/RESTORE-test/smallDelta.txtsmall delta (gradient time - s: either scalar or list)falsetruetetxt0/home/bennett/Desktop/RESTORE-test/te.txtTE (echo time - s: either scalar or list)falsetrueschemeV10CAMINO DTI Description (SchemeV1)falsetrueschemeschemev10CAMINO DTI Description (SchemeV1)falsetrueTensor Estimation Camino70.0150.0135.0356.0135.0356.0150.070.0http://sites.google.com/site/bennettlandman/Bennett Landmanlandman@jhu.eduBasser PJ, Mattielo J, and Lebihan D, Estimation of the effective self-diffusion tensor from the NMR spin echo, Journal of Magnetic Resonance, 103, 247-54, 1994.Jones DK and Basser PJ, Squashing peanuts and smashing pumpkins: How noise distorts diffusion-weighted MR data, Magnetic Resonance in Medicine, 52(5), 979-993, 2004.Alexander DC and Barker GJ, Optimal imaging parameters for fibre-orientation estimation in diffusion MRI, NeuroImage, 27, 357-367, 2005Chang L-C, Jones DK and Pierpaoli C, RESTORE: Robust estimation of tensors by outlier rejection, Magnetic Resonance in Medicine, 53(5), 1088-1095, 2005.1.1.1.1 Tensor estimation provided by CAMINO.Various tensor estimators. See Camino webpage for more details.http://sites.google.com/site/jhupami/Computer Science Department - University College LondonTensor Estimation Caminoedu.jhu.ece.iacl.plugins.dti.DWITensorEstCaminotrueAlgorithm Informationfalsetrue-1-1-1-1tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16trueDWI and Reference Image(s) Data (4D)falsetrue-1-1-1-1tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16trueVolume Collectionfalsetruecsvtxt0/home/bennett/Desktop/RESTORE-test/DTIFiles.txtList Filefalsetrue001000000Offset Indexfalsetrue00100000Start Entryfalsetrue-1-1100000End Entryfalsetruevolumecollectionlist70.0150.00.011.00.011.0150.070.0VolumeBasevolumecollectionlistfalsetrueBasevolumecollectionlistfalsetrue-1-1-1-1tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16trueDWI and Reference Image(s) Data (4D)falsetrueTensor Estimation Camino70.0150.0322.0363.0322.0363.0150.070.0Algorithm Informationfalsetrueschemeschemev10CAMINO DTI Description (SchemeV1)falsetrue-1-1-1-11tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16Mask Volume to Determine Region of Tensor Estimation (3D)falsefalse-1-1-1-1tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16trueVolume Collectionfalsetruecsvtxt0/home/bennett/Desktop/RESTORE-test/MaskFiles.txtList Filefalsetrue001000000Offset Indexfalsetrue00100000Start Entryfalsetrue-1-1100000End Entryfalsetruevolumecollectionlist70.0150.0123.0159.0123.0159.0150.070.0VolumeBasevolumecollectionlistfalsetrueBasevolumecollectionlistfalsetrue-1-1-11tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16Mask Volume to Determine Region of Tensor Estimation (3D)falsefalse00AlgebraicLinearNonLinearRESTOREWeightedLinear3Select CAMINO Tensor Estimator?falsetrue0.0-1.0E201.0E20Noise Level (RESTORE only)falsetrue0.0-1.0E201.0E20Floatfalsetrue/home/bennett/Desktop/RESTORE-test/NoiseLevel.txtList Filefalsetrue001000000Offset Indexfalsetrue00100000Start Entryfalsetrue-1-1100000End Entryfalsetruedoublelist70.0150.0437.021.0437.021.0150.070.0Number.FloatBasedoublelistfalsetrueBasedoublelistfalsetrue-1-1-1-16tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16Tensor (xx,xy,xz,yy,yz,zz)falsetrue-1-1-16tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16Tensor Volume (4D)falsetrueTensor : Compute DTI Contrasts70.0150.0313.0457.0313.0457.0150.070.0http://sites.google.com/site/bennettlandman/Bennett Landmanlandman@jhu.eduBasser, PJ, Jones, DK. "Diffusion-tensor MRI: Theory, experimental design and data analysis - a technical review." NMR Biomed 2002; 15(7-8):456-671.2 Estimates tensor contrasts.By default, estimates Mean Diffusion (MD), Fractional Anisotropy (FA), and the primary eigenvector (VEC1).Can optionally output all eigenvalues/vectors, as well as Relative Anisotropy (RA), and Volume Ratio (VR).http://sites.google.com/site/jhupami/Johns Hopkins University, Department of Biomedical EngineeringTensor : Compute DTI Contrastsedu.jhu.ece.iacl.plugins.dti.DWITensorContraststrueAlgorithm Informationfalsetrue<none>RA.VR0Additional Anisotropies:falsetrue<none>Eigen vectors/values0Additional Eigen-Contrasts:falsetrue-1-1-11FLOATtiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16FAfalsetrue-1-1-11tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16Scalar Weight Volume (3D)falsetrueTensor : Compute Color Encoded Map70.0150.0321.0559.0321.0559.0150.070.0http://sites.google.com/site/bennettlandman/Bennett Landmanlandman@jhu.eduBasser, PJ, Jones, DK. "Diffusion-tensor MRI: Theory, experimental design and data analysis - a technical review." NMR Biomed 2002; 15(7-8):456-671.2 Create an RGB colormap image from a scalar intensity weighted by a vectorUse a scalar volume (intensity in [0,1] to weight a vector volume (4-D, 4th dimension = x,y,z, in [-1 1]) to create a single RGB color volume. This is typically used with an FA weight an PEV vector.http://sites.google.com/site/jhupami/Johns Hopkins University, Department of Biomedical EngineeringTensor : Compute Color Encoded Mapedu.jhu.ece.iacl.plugins.dti.DWITensorColorEncodedMaptrueAlgorithm Informationfalsetrue-1-1-13tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16Vector direction to encoded color (4D)falsetrue-1-1-13tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16VEC1falsetrue-1-1-1-11COLORtiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16RGBfalsetrueExecution Timefalsetrueedu.jhu.ece.iacl.plugins.dti.DWITensorColorEncodedMap1.1cbf535f3-a6fa-45c8-9076-448975fe2af6AlgorithmtruetrueDTIIACLTensor : Compute Color Encoded Mapfalsetrueedu.jhu.ece.iacl.plugins.dti.DWITensorColorEncodedMap1.159e11681-891d-4360-b64b-113c6ab8bb49AlgorithmtruetrueBaseTensor : Compute Color Encoded Mapfalsetrue-1-1-1-11tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16MDfalsetrue-1-1-11tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16RAfalsefalse-1-1-11tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16VRfalsefalse-1-1-13tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16Evalsfalsefalse-1-1-13tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16VEC2falsefalse-1-1-13tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16VEC3falsefalseExecution Timefalsetrueedu.jhu.ece.iacl.plugins.dti.DWITensorContrasts1.1ae5e0dd0-9575-47a6-b4d1-21e53119c902AlgorithmtruetrueDTIIACLTensor : Compute DTI Contrastsfalsetrueedu.jhu.ece.iacl.plugins.dti.DWITensorContrasts1.1515ad401-f0f1-4bb5-bca5-029e7b49a833AlgorithmtruetrueBaseTensor : Compute DTI Contrastsfalsetrue-1-1-1-11tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16Exit Codefalsetrue-1-1-11tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16IntensityfalsetrueExecution Timefalsetrueedu.jhu.ece.iacl.plugins.dti.DWITensorEstCamino1.1628556fb-36a6-4169-a808-95aefc358adcAlgorithmtruetrueModeling.Diffusion.WholeVolumeCaminoTensor Estimation Caminofalsetrueedu.jhu.ece.iacl.plugins.dti.DWITensorEstCamino1.12a893fdb-ffa7-4372-9084-2fba9a769b5eAlgorithmtruetrueBaseTensor Estimation Caminofalsetrue-1-1AlgebraicLinearNonLinearRESTOREWeightedLinear1Select CAMINO Tensor Estimator?falsetrue0.0-1.0E201.0E20Noise Level (RESTORE only)falsetrue-1-1-16tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16Tensor (xx,xy,xz,yy,yz,zz)falsetrue-1-1-16tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16Tensor Volume (4D)falsetrueTensor : Compute DTI Contrasts70.0150.0111.0451.0111.0451.0150.070.0Algorithm Informationfalsetrue<none>RA.VR0Additional Anisotropies:falsetrue<none>Eigen vectors/values0Additional Eigen-Contrasts:falsetrue-1-1-11tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16FAfalsetrue-1-1-11tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16Scalar Weight Volume (3D)falsetrueTensor : Compute Color Encoded Map70.0150.0104.0563.0104.0563.0150.070.0Algorithm Informationfalsetrue-1-1-13tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16Vector direction to encoded color (4D)falsetrue-1-1-13tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16VEC1falsetrue-1-1-1-11tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16RGBfalsetrueExecution Timefalsetrueedu.jhu.ece.iacl.plugins.dti.DWITensorColorEncodedMap1.16fd56364-1070-4834-a73a-21a2be014a02AlgorithmtruetrueDTIIACLTensor : Compute Color Encoded Mapfalsetrueedu.jhu.ece.iacl.plugins.dti.DWITensorColorEncodedMap1.106548c29-6706-4baf-b95f-ea0c49ea2b51AlgorithmtruetrueBaseTensor : Compute Color Encoded Mapfalsetrue-1-1-1-11tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16MDfalsetrue-1-1-11tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16RAfalsefalse-1-1-11tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16VRfalsefalse-1-1-13tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16Evalsfalsefalse-1-1-13tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16VEC2falsefalse-1-1-13tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16VEC3falsefalseExecution Timefalsetrueedu.jhu.ece.iacl.plugins.dti.DWITensorContrasts1.18cb5a628-9ffb-4ba8-96c4-8d5fe0311927AlgorithmtruetrueDTIIACLTensor : Compute DTI Contrastsfalsetrueedu.jhu.ece.iacl.plugins.dti.DWITensorContrasts1.1725a25a2-2e84-4180-8bbd-c40590e0dd4eAlgorithmtruetrueBaseTensor : Compute DTI Contrastsfalsetrue-1-1-1-11tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16Exit Codefalsetrue-1-1-11tiftifflsmstkjpegjpgbmpgifpictpicpngpsddibtgaxbmxpmxmlpcxicocurmghmgzrawimgniinhdrnrrdimadcmbinmapmncaviimcolyqtmovheadbrikicsidshdrspmfitsdm3tmgmrcwusiggednologctinfoinfo~voiafniparparv2recfrecjp2vtk16IntensityfalsetrueExecution Timefalsetrueedu.jhu.ece.iacl.plugins.dti.DWITensorEstCamino1.1ecf51c81-add5-41b3-88b1-2873e880798dAlgorithmtruetrueModeling.Diffusion.WholeVolumeCaminoTensor Estimation Caminofalsetrueedu.jhu.ece.iacl.plugins.dti.DWITensorEstCamino1.1e207b24f-aae0-4a21-9ddc-d2f1b52459caAlgorithmtruetrueBaseTensor Estimation Caminofalsetrue-1Execution Timefalsetrueedu.jhu.ece.iacl.plugins.dti.DWIDefineCaminoScheme1.1de9f16e8-12b3-40ed-80bf-ad4331c52442AlgorithmtruetrueModeling.DiffusionCaminoDWI: Define Camino Schemefalsetrueedu.jhu.ece.iacl.plugins.dti.DWIDefineCaminoScheme1.1ce37649b-7e76-4a01-9a8f-020675e9057fAlgorithmtruetrueBaseDWI: Define Camino Schemefalsetrue