/data/qball20091006/dti3000 12000 3 file:/data/qball20091006/dti3000/ false xml C:\catnapGC\aaaaOut.txt 0 FILE File Collection false true File Collection false true true File Collection false true tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 0 Mult-Component Volume FileCollection false true Mult-Component Volume FileCollection false true true Mult-Component Volume FileCollection false true extractAllComponents 70.0 150.0 391.0 116.0 391.0 116.0 150.0 70.0 UNKNOWN extractAllComponents edu.jhu.ece.iacl.plugins.utilities.volume.MedicAlgorithmExtractFileCollectionComponents true Algorithm Information false true 3 -1000000000 1000000000 Dimension to Extract false true tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 0 Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true Volumes Out false true true Volumes Out false true tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 0 Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true Source Volumes false true true Source Volumes false true FileColReg 70.0 252.0 139.0 482.0 139.0 482.0 252.0 70.0 John Bogovic bogovic@jhu.edu 1.1.1.1 Extract Components of each input volume. Organize the output as a FileCollection http://sites.google.com/site/jhupami/ Johns Hopkins University FileColReg edu.jhu.ece.iacl.plugins.registration.MedicAlgorithmEfficientFileCollectionRegistration true Algorithm Information false true tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 0 Target Volume false true -1 -1 -1 1 tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 vtk 24 Mean B0 volume false true Mean_B0 70.0 150.0 234.0 355.0 234.0 355.0 150.0 70.0 RC Bennett Landman landman@jhu.edu John Bogovic bogovic@jhu.edu 1.5 Registers (6 dof) and averages all minimally diffusion weighted (b0) to the first b0. Registration is optional. http://www.nitrc.org/projects/jist/ Johns Hopkins University Mean_B0 edu.jhu.ece.iacl.plugins.dti.ComputeMeanB0 false Algorithm Information false true true tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 0 Input Slab Collection false true -1 grad dpf 0 Table of diffusion weighting directions false true grad 0 Gradient Table false true multigradTableCreator 70.0 294.0 86.0 214.0 86.0 214.0 294.0 70.0 1.8 multigradTableCreator edu.jhu.ece.iacl.plugins.dti.MedicAlgorithmMultiGradientTableCreator true Algorithm Information false true 0 Date false true 0 Scan Date false true mparv3info 90.0 72.0 150.0 70.0 John Bogovic & Jon Farrell bogovic@jhu.edu 1.2 Parses Phillips .par files (version 3 and earlier) and extracts information relevant for DTI Gradient Table Creation Johns Hopkins University, Departments of Electrical and Biomedical Engineering mparv3info edu.jhu.ece.iacl.plugins.dti.MedicAlgorithmMultiParV3Info true Algorithm Information false true true par PAR rec REC parv2 0 Par file false true true 0 File Collection false true C:\catnapGC\aaaaOut.txt csv txt 0 file:/data/qball20091006/recs.txt List File false true 0 0 1000000 Offset Index false true 0 0 100000 Start Entry false true -1 -1 100000 End Entry false true filecollectionlist 70.0 150.0 155.0 6.0 155.0 6.0 150.0 70.0 File Base filecollectionlist false true Base filecollectionlist false true -1 0 Par Version false true 0 Par Version false true -1 0 Slice Angulation false true 0 Slice Angulation (from Par) false false -1 0 Slice Orientation false true 0 Slice Orientation (from Par) false false -1 true b 0 b Values false true true b 0 b Values false true -1 Execution Time false true edu.jhu.ece.iacl.plugins.dti.MedicAlgorithmMultiParV3Info 1.1 ad8e5583-3465-4520-8372-ed7da3860fb8 Algorithm true true DTI IACL mparv3info false true edu.jhu.ece.iacl.plugins.dti.MedicAlgorithmMultiParV3Info 1.1 6bd31b0f-bc38-4065-9ce9-d493920a8e59 Algorithm true true Base mparv3info false true -1 -1.0 -1.0 -1.0 3 1 3 1 Slice Angulation false true <read from Par> Transverse Sagittal Coronal 0 Slice Orientation false true 0 Foldover (from Par) false false <read from Par> Anterior-Posterior Right-Left Superior-Inferior 1 Foldover false true 0 Patient Orientation (from Par) false false <read from Par> Supine Prone Right Decubitus Left Decubitus 1 Patient Orientation false true 0 Patient Postition (from Par) false false <read from Par> Head-First Feet-First 1 Patient Position false true KIRBY Other 0 Center false true 1.5 3.0 1 Scanner false true Anterior Posterior Right Left Superior Inferior 1 Fat Shift false true Jones30 (KKI Only) Inverted Jones30 (KKI Only) Philips No Overplus High Philips No Overplus Medium Philips No Overplus Low Philips Yes Overplus High Philips Yes Overplus Medium Philips Yes Overplus Low User-defined 0 Gradient Table false true 0 User-defined Gradient Table false false -KIRBY (auto)- Rel_11.x Rel_11.x Rel_2.0 Rel_2.1 Rel_2.5 0 Philips Release false true true "Sort Images" checked on scanner false true DTIS IACL FSL MedINRIA 1 Output Table Type false true b 0 b values false true b 0 Table of b-values false true -1 b 0 Table of b-values false true Compute_Mean_DW 70.0 150.0 535.0 361.0 535.0 361.0 150.0 70.0 Bennett Landman landman@jhu.edu John Bogovic bogovic@jhu.edu 1.3 Averages all diffusion weighted (DW, not b0). Registration (12 dof) to the first b0 is optional. http://www.nitrc.org/projects/jist/ Johns Hopkins University Compute_Mean_DW edu.jhu.ece.iacl.plugins.dti.ComputeMeanDW false Algorithm Information false true true tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 0 Input Slab Collection false true -1 grad dpf 0 Table of diffusion weighting directions false true -1 false Register to first b0? false true -1 -1 -1 1 tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 vtk 24 Mean DW volume false true Execution Time false true edu.jhu.ece.iacl.plugins.dti.ComputeMeanDW 1.1 95d9c329-610c-43a6-8efd-57ef9c60dfe0 Algorithm true true DTI IACL Compute_Mean_DW false true edu.jhu.ece.iacl.plugins.dti.ComputeMeanDW 1.1 aeb036da-a70a-49f8-b6bc-044f407ab931 Algorithm true true Base Compute_Mean_DW false true -1 b 0 Table of b-values false true Tensor_Estimation_LLMSE 70.0 150.0 108.0 671.0 108.0 671.0 150.0 70.0 http://sites.google.com/site/bennettlandman/ Bennett Landman landman@jhu.edu Landman BA, Farrell JA, Jones CK, Smith SA, Prince JL, Mori S. Effects of diffusion weighting schemes on the reproducibility of DTI-derived fractional anisotropy, mean diffusivity, and principal eigenvector measurements at 1.5T. Neuroimage 2007;36(4):1123-1138. Basser, PJ, Jones, DK. "Diffusion-tensor MRI: Theory, experimental design and data analysis - a technical review." NMR Biomed 2002; 15(7-8):456-67 1.3 Log-linear minium mean squared error tensor estimation. http://www.nitrc.org/projects/jist/ Johns Hopkins University, Department of Biomedical Engineering Tensor_Estimation_LLMSE edu.jhu.ece.iacl.plugins.dti.DWITensorEstLLMSE false Algorithm Information false true true tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 0 DWI and Reference Image(s) Data (4D) false true true tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 0 Output Combined Slabs false true VolCollect_to_Combined4DSlabCollect 70.0 150.0 118.0 570.0 118.0 570.0 150.0 70.0 Bennett Landman landman@jhu.edu John Bogovic bogovic@jhu.edu 1.7 Converts VolumeCollection to CombinedSlabCollection. Converts VolumeCollection to CombinedSlabCollection. http://www.nitrc.org/projects/jist/ Johns Hopkins University VolCollect_to_Combined4DSlabCollect edu.jhu.ece.iacl.plugins.utilities.volume.VolumeCollectionToCombinedSlabCollection false Algorithm Information false true true tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 0 Input Volume Files false true true tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 0 Registered Volumes false true -1 4 1 100 Number of Slabs false true Execution Time false true edu.jhu.ece.iacl.plugins.utilities.volume.VolumeCollectionToCombinedSlabCollection 1.1 fc2b1684-63f6-4a87-89a1-0d7ed25012f7 Algorithm true true Utilities.Volume IACL VolCollect_to_Combined4DSlabCollect false true edu.jhu.ece.iacl.plugins.utilities.volume.VolumeCollectionToCombinedSlabCollection 1.1 bf0a958e-a7ab-480c-bd7e-1086ba459751 Algorithm true true Base VolCollect_to_Combined4DSlabCollect false true -1 grad dpf 0 Table of diffusion weighting directions false true grad 0 Corrected Gradient Table false false -1 false tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 0 Mask Volume to Determine Region of Tensor Estimation (3D) false true Yes No 0 Attempt to estimate tensors for voxels with missing data? false true true tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 0 Tensor (xx,xy,xz,yy,yz,zz) false true true tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 0 Input Slab Collection false true Combined4DSlabCollect_to_VolCollect 70.0 150.0 96.0 744.0 96.0 744.0 150.0 70.0 Bennett Landman landman@jhu.edu John Bogovic bogovic@jhu.edu 1.5 http://www.nitrc.org/projects/jist/ Johns Hopkins University Combined4DSlabCollect_to_VolCollect edu.jhu.ece.iacl.plugins.utilities.volume.CombinedSlabCollectionToVolumeCollection false Algorithm Information false true true Use 4D Output false true false tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 0 Output FileVolume Collection false true -1 -1 -1 1 tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 vtk 24 4D Output (optional) false false -1 -1 -1 6 tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 vtk 24 Tensor Volume (4D) false true Tensor_Compute_DTI_Contrasts 70.0 150.0 190.0 823.0 190.0 823.0 150.0 70.0 http://sites.google.com/site/bennettlandman/ Bennett Landman landman@jhu.edu Basser, PJ, Jones, DK. "Diffusion-tensor MRI: Theory, experimental design and data analysis - a technical review." NMR Biomed 2002; 15(7-8):456-67 1.4 Estimates tensor contrasts. By default, estimates Mean Diffusion (MD), Fractional Anisotropy (FA), and the primary eigenvector (VEC1).Can optionally output all eigenvalues/vectors, as well as Relative Anisotropy (RA), and Volume Ratio (VR). http://www.nitrc.org/projects/jist/ Johns Hopkins University, Department of Biomedical Engineering Tensor_Compute_DTI_Contrasts edu.jhu.ece.iacl.plugins.dti.DWITensorContrasts false Algorithm Information false true <none> RA.VR 0 Additional Anisotropies: false true <none> Eigen vectors/values 0 Additional Eigen-Contrasts: false true -1 -1 -1 1 FLOAT tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 vtk 24 FA false true -1 -1 -1 1 tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 vtk 16 Scalar Weight Volume (3D) false true Tensor : Compute Color Encoded Map 70.0 150.0 172.0 927.0 172.0 927.0 150.0 70.0 http://sites.google.com/site/bennettlandman/ Bennett Landman landman@jhu.edu Basser, PJ, Jones, DK. "Diffusion-tensor MRI: Theory, experimental design and data analysis - a technical review." NMR Biomed 2002; 15(7-8):456-67 1.1.1.1 Create an RGB colormap image from a scalar intensity weighted by a vector Use a scalar volume (intensity in [0,1] to weight a vector volume (4-D, 4th dimension = x,y,z, in [-1 1]) to create a single RGB color volume. This is typically used with an FA weight an PEV vector. http://sites.google.com/site/jhupami/ Johns Hopkins University, Department of Biomedical Engineering Tensor : Compute Color Encoded Map edu.jhu.ece.iacl.plugins.dti.DWITensorColorEncodedMap true Algorithm Information false true -1 -1 -1 3 tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 vtk 16 Vector direction to encoded color (4D) false true -1 -1 -1 3 tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 vtk 24 VEC1 false true -1 -1 -1 -1 1 COLOR tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 vtk 16 RGB false true Execution Time false true edu.jhu.ece.iacl.plugins.dti.DWITensorColorEncodedMap 1.1 693ccea4-738d-40a6-bbb0-d08998ee2c53 Algorithm true true IACL.DTI Base Tensor : Compute Color Encoded Map false true edu.jhu.ece.iacl.plugins.dti.DWITensorColorEncodedMap 1.1 37fd4eaa-194e-4486-96b0-ca44b491861a Algorithm true true Base Tensor : Compute Color Encoded Map false true -1 -1 -1 -1 1 tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 vtk 24 MD false true -1 -1 -1 1 tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 vtk 24 RA false false -1 -1 -1 1 tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 vtk 24 VR false false -1 -1 -1 3 tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 vtk 24 Evals false false -1 -1 -1 3 tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 vtk 24 VEC2 false false -1 -1 -1 3 tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 vtk 24 VEC3 false false Execution Time false true edu.jhu.ece.iacl.plugins.dti.DWITensorContrasts 1.1 6efe45df-c4cf-4348-8b78-bfcf6fe21b9b Algorithm true true DTI IACL Tensor_Compute_DTI_Contrasts false true edu.jhu.ece.iacl.plugins.dti.DWITensorContrasts 1.1 72671bf2-612c-411f-8690-38eef0a2b8ea Algorithm true true Base Tensor_Compute_DTI_Contrasts false true -1 Execution Time false true edu.jhu.ece.iacl.plugins.utilities.volume.CombinedSlabCollectionToVolumeCollection 1.1 e8f732d4-6644-47e8-87a9-695e1912b389 Algorithm true true Utilities.Volume IACL Combined4DSlabCollect_to_VolCollect false true edu.jhu.ece.iacl.plugins.utilities.volume.CombinedSlabCollectionToVolumeCollection 1.1 21763949-5e54-4a34-9c20-5220394b0db8 Algorithm true true Base Combined4DSlabCollect_to_VolCollect false true -1 Execution Time false true edu.jhu.ece.iacl.plugins.dti.DWITensorEstLLMSE 1.1 653e8fcd-e686-466a-8083-c59789d05647 Algorithm true true Modeling.Diffusion IACL Tensor_Estimation_LLMSE false true edu.jhu.ece.iacl.plugins.dti.DWITensorEstLLMSE 1.1 d15d1914-d447-4f7e-a171-da1473f8c96e Algorithm true true Base Tensor_Estimation_LLMSE false true -1 Execution Time false true edu.jhu.ece.iacl.plugins.dti.MedicAlgorithmMultiGradientTableCreator 1.1 3b267291-0b71-47ae-924a-4d73f5b35395 Algorithm true true DTI IACL multigradTableCreator false true edu.jhu.ece.iacl.plugins.dti.MedicAlgorithmMultiGradientTableCreator 1.1 b0066d30-ac55-4e9d-9712-fb176a1257de Algorithm true true Base multigradTableCreator false true grad 0 Gradient Table false false false Gradient Table false true -1 -1 true Register b0's ? false true Execution Time false true edu.jhu.ece.iacl.plugins.dti.ComputeMeanB0 1.1 1217fc1d-0285-42f3-b775-1f231f662e2b Algorithm true true DTI IACL Mean_B0 false true edu.jhu.ece.iacl.plugins.dti.ComputeMeanB0 1.1 fa2c4885-7753-4ef0-9403-ccef15e745dd Algorithm true true Base Mean_B0 false true -1 Rigid - 6 Global rescale - 7 Specific rescale - 9 Affine - 12 3 Degrees of freedom false true Correlation ratio Least squares Normalized cross correlation Normalized mutual information 0 Cost function false true Trilinear Bspline 3rd order Bspline 4th order Cubic Lagrangian Quintic Lagrangian Heptic Lagrangian Windowed sinc 0 Registration interpolation false true Trilinear Bspline 3rd order Bspline 4th order Cubic Lagrangian Quintic Lagrangian Heptic Lagrangian Windowed sinc Nearest Neighbor 0 Output interpolation false true All X Y Z 0 Apply rotation false true -30.0 -360.0 360.0 Minimum angle false true 30.0 -360.0 360.0 Maximum angle false true 15.0 0.0 360.0 Coarse angle increment false true 6.0 0.0 360.0 Fine angle increment false true 10 -1000000000 1000000000 Multiple of tolerance to bracket the minimum false true 2 -1000000000 1000000000 Number of iterations false true 3 -1000000000 1000000000 Number of minima from Level 8 to test at Level 4 false true true Use the max of the min resolutions of the two datasets when resampling false true true Subsample image for speed false true false Skip multilevel search (Assume images are close to alignment) false true true mtx 0 Transformation Matrices false true Execution Time false true edu.jhu.ece.iacl.plugins.registration.MedicAlgorithmEfficientFileCollectionRegistration 1.1 68dbadcc-b0d5-46af-972a-1fd47072d2ac Algorithm true true Base Main false true Base Advanced false true IACL.Registration Base FileColReg false true edu.jhu.ece.iacl.plugins.registration.MedicAlgorithmEfficientFileCollectionRegistration 1.1 7d1df9c8-3fc3-4d73-9b8f-15a4310c3981 Algorithm true true Base FileColReg false true -1 Algorithm Calculation 19:00:03 19:02:10 126860 2 262 15:38:55 15:43:59 303922 Execution Time false true edu.jhu.ece.iacl.plugins.utilities.volume.MedicAlgorithmExtractFileCollectionComponents 1.1 6db97641-90aa-44a8-bffb-13fb92b63e05 Algorithm true true IACL.Utilities.Volume Base extractAllComponents false true edu.jhu.ece.iacl.plugins.utilities.volume.MedicAlgorithmExtractFileCollectionComponents 1.1 5a3b71d5-7c2d-4276-96f5-5b720f1ff2d3 Algorithm true true Base extractAllComponents false true -1 csv txt 0 /data/qball20091006/recs.txt file:/data/qball20091006/recs.txt List File false true 0 0 1000000 Offset Index false true 0 0 100000 Start Entry false true -1 -1 100000 End Entry false true filecollectionlist 70.0 150.0 363.0 6.0 363.0 6.0 150.0 70.0 File Base filecollectionlist false true Base filecollectionlist false true