C:\Users\bennett\Desktop\testnap 2500 1 file:/C:/Users/bennett/Desktop/testnap/ false xml Combine_b0_Lists 70.0 150.0 127.0 263.0 127.0 263.0 150.0 70.0 RC Bennett Landman landman@jhu.edu John Bogovic bogovic@jhu.edu 1.10 Combine multiple b-value tables into one larger b-value list. http://www.nitrc.org/projects/jist/ Johns Hopkins University Combine_b0_Lists edu.jhu.ece.iacl.plugins.dti.DWICombineBvalTables false Algorithm Information false true b txt lst bs 0 FILE b0 Values false true true b0 Values false true 0 File Collection false true true File Collection false true C:\catnapGC\aaaaOut.txt csv txt 0 E:\Data\reich1\b.txt List File false true 0 0 1000000 Offset Index false true 0 0 100000 Start Entry false true -1 -1 100000 End Entry false true filecollectionlist 70.0 150.0 138.0 106.0 138.0 106.0 150.0 70.0 4 File Base filecollectionlist false true 1 Base filecollectionlist false true -1 b 0 Table of b-values false true b 0 Table of b-values false true Mean_B0 70.0 150.0 266.0 368.0 266.0 368.0 150.0 70.0 Bennett Landman landman@jhu.edu John Bogovic bogovic@jhu.edu 1.9 Registers (6 dof) and averages all minimally diffusion weighted (b0) to the first b0. Registration is optional. http://www.nitrc.org/projects/jist/ Johns Hopkins University Mean_B0 edu.jhu.ece.iacl.plugins.dti.ComputeMeanB0 false Algorithm Information false true -1 -1 -1 -1 tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 vtk 16 true Input Slab Collection false true -1 -1 -1 -1 tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 vtk 16 true Output File Collection false true FileCollection_To_VolumeCollection 70.0 150.0 514.0 348.0 514.0 348.0 150.0 70.0 Bennett Landman landman@jhu.edu 1.5 Convert a FileCollection into a VolumeCollection. Convert a FileCollection into a VolumeCollection. FileCollection_To_VolumeCollection edu.jhu.ece.iacl.plugins.utilities.file.FileCollectionToVolumeCollection false Algorithm Information false true true 0 File Collection false true true tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 0 Volumes Out false true Extract_FileCollection_Components 70.0 150.0 535.0 211.0 535.0 211.0 150.0 70.0 1.5 Extract_FileCollection_Components edu.jhu.ece.iacl.plugins.utilities.volume.MedicAlgorithmExtractFileCollectionComponents false Algorithm Information false true tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 0 Mult-Component Volume FileCollection false true true Mult-Component Volume FileCollection false true -1 -1 -1 -1 -1 -1 -1 -1 tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 vtk 24 20060406_11_1_transform_sm.nii false true tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 vtk 16 true Volume Collection false true E:\Data\reich1\rec.txt List File false true 0 0 1000000 Offset Index false true 0 0 100000 Start Entry false true -1 -1 100000 End Entry false true volumecollectionlist 70.0 150.0 542.0 102.0 542.0 102.0 150.0 70.0 4 Volume Base volumecollectionlist false true 1 Base volumecollectionlist false true -1 3 -1000000000 1000000000 Dimension to Extract false true Execution Time false true 0 edu.jhu.ece.iacl.plugins.utilities.volume.MedicAlgorithmExtractFileCollectionComponents 1.1 db1f54e1-8830-46f3-a734-a4322afbfd10 Algorithm true true Utilities.Volume IACL Extract_FileCollection_Components false true 0 edu.jhu.ece.iacl.plugins.utilities.volume.MedicAlgorithmExtractFileCollectionComponents 1.1 b02fc981-20f0-409e-92c1-3418a16c0daf Algorithm true true Base Extract_FileCollection_Components false true true tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 0 Source Volumes false true FileColReg 70.0 252.0 199.0 495.0 199.0 495.0 252.0 70.0 UNKNOWN John Bogovic bogovic@jhu.edu 1.6 Extract Components of each input volume. Organize the output as a FileCollection http://www.nitrc.org/projects/jist/ Johns Hopkins University FileColReg edu.jhu.ece.iacl.plugins.registration.MedicAlgorithmEfficientFileCollectionRegistration true Algorithm Information false true tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 0 Target Volume false true -1 -1 -1 1 tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 vtk 16 Mean B0 volume false true -1 grad 0 Gradient Table false false false Gradient Table false true grad 0 Table of Gradient Directions false true Combine_Gradient_Table_Lists 70.0 150.0 294.0 246.0 294.0 246.0 150.0 70.0 Bennett Landman landman@jhu.edu John Bogovic bogovic@jhu.edu 1.7 Concatinate multiple gradient tables into one larger gradient table. http://www.nitrc.org/projects/jist/ Johns Hopkins University Combine_Gradient_Table_Lists edu.jhu.ece.iacl.plugins.dti.DWICombineGradTables false Algorithm Information false true txt dpf grad 0 Gradient Tables false true true Gradient Tables false true 0 File Collection false true true File Collection false true C:\catnapGC\aaaaOut.txt E:\Data\reich1\grad.txt List File false true 0 0 1000000 Offset Index false true 0 0 100000 Start Entry false true -1 -1 100000 End Entry false true filecollectionlist 70.0 150.0 326.0 134.0 326.0 134.0 150.0 70.0 4 File Base filecollectionlist false true 1 Base filecollectionlist false true -1 Algorithm Calculation 19:00:03 19:00:03 62 2 8 11:32:12 11:32:12 67 Execution Time false true 0 edu.jhu.ece.iacl.plugins.dti.DWICombineGradTables 1.1 97d9d0c5-f8e3-4dc9-8fd4-1ce0747250af Algorithm true true DTI IACL Combine_Gradient_Table_Lists false true 0 edu.jhu.ece.iacl.plugins.dti.DWICombineGradTables 1.1 09301cf2-17f9-4057-a8b9-40d8a9fb669a Algorithm true true Base Combine_Gradient_Table_Lists false true grad dpf 0 Table of diffusion weighting directions false true -1 -1 Rigid - 6 Global rescale - 7 Specific rescale - 9 Affine - 12 3 Degrees of freedom false true Correlation ratio Least squares Normalized cross correlation Normalized mutual information 0 Cost function false true Trilinear Bspline 3rd order Bspline 4th order Cubic Lagrangian Quintic Lagrangian Heptic Lagrangian Windowed sinc 0 Registration interpolation false true Trilinear Bspline 3rd order Bspline 4th order Cubic Lagrangian Quintic Lagrangian Heptic Lagrangian Windowed sinc Nearest Neighbor 0 Output interpolation false true All X Y Z 0 Apply rotation false true -30.0 -360.0 360.0 Minimum angle false true 30.0 -360.0 360.0 Maximum angle false true 15.0 0.0 360.0 Coarse angle increment false true 6.0 0.0 360.0 Fine angle increment false true 10 -1000000000 1000000000 Multiple of tolerance to bracket the minimum false true 2 -1000000000 1000000000 Number of iterations false true 3 -1000000000 1000000000 Number of minima from Level 8 to test at Level 4 false true true Use the max of the min resolutions of the two datasets when resampling false true true Subsample image for speed false true false Skip multilevel search (Assume images are close to alignment) false true true mtx 0 Transformation Matrices false true true tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 0 Registered Volumes false true true 0 File Collection false true FileCollection_To_VolumeCollection 70.0 150.0 468.0 606.0 468.0 606.0 150.0 70.0 Algorithm Information false true -1 -1 -1 -1 tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 vtk 16 true Output File Collection false true -1 -1 -1 -1 tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 vtk 16 true Input Volume Files false true VolCollect_to_Combined4DSlabCollect 70.0 150.0 158.0 648.0 158.0 648.0 150.0 70.0 Bennett Landman landman@jhu.edu John Bogovic bogovic@jhu.edu 1.11 Converts VolumeCollection to CombinedSlabCollection. Splits each volume in the input collection into a number of smaller volumes "slabs". The user can specify the number of slabswith the "Number of Slabs" input. The output collection will have numSlabs volumes, each of which will have N components in the fourth image dimension (where N is the number of input volumes). Converts VolumeCollection to CombinedSlabCollection. Splits each volume in the input collection into a number of smaller volumes "slabs". The user can specify the number of slabswith the "Number of Slabs" input. The output collection will have numSlabs volumes, each of which will have N components in the fourth image dimension (where N is the number of input volumes). http://www.nitrc.org/projects/jist/ Johns Hopkins University VolCollect_to_Combined4DSlabCollect edu.jhu.ece.iacl.plugins.utilities.volume.VolumeCollectionToCombinedSlabCollection false Algorithm Information false true 4 1 100 Number of Slabs false true -1 -1 -1 -1 tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 vtk 16 true Output Combined Slabs false true true tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 0 DWI and Reference Image(s) Data (4D) false true Tensor_Estimation_LLMSE 70.0 150.0 340.0 741.0 340.0 741.0 150.0 70.0 http://sites.google.com/site/bennettlandman/ Bennett Landman landman@jhu.edu Landman BA, Farrell JA, Jones CK, Smith SA, Prince JL, Mori S. Effects of diffusion weighting schemes on the reproducibility of DTI-derived fractional anisotropy, mean diffusivity, and principal eigenvector measurements at 1.5T. Neuroimage 2007;36(4):1123-1138. Basser, PJ, Jones, DK. "Diffusion-tensor MRI: Theory, experimental design and data analysis - a technical review." NMR Biomed 2002; 15(7-8):456-67 1.6 Log-linear minium mean squared error tensor estimation. http://www.nitrc.org/projects/jist/ Johns Hopkins University, Department of Biomedical Engineering Tensor_Estimation_LLMSE edu.jhu.ece.iacl.plugins.dti.DWITensorEstLLMSE false Algorithm Information false true grad dpf 0 Table of diffusion weighting directions false true grad 0 Corrected Gradient Table false false -1 b 0 Table of b-values false true -1 false tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 0 Mask Volume to Determine Region of Tensor Estimation (3D) false true Yes No 0 Attempt to estimate tensors for voxels with missing data? false true true tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 0 Tensor (xx,xy,xz,yy,yz,zz) false true true 0 File Collection false true FileCollection_To_VolumeCollection 70.0 150.0 540.0 758.0 540.0 758.0 150.0 70.0 Algorithm Information false true -1 -1 -1 -1 tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 vtk 16 true Output File Collection false true -1 -1 -1 -1 tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 vtk 16 true Input Slab Collection false true Combined4DSlabCollect_to_VolCollect 70.0 150.0 400.0 862.0 400.0 862.0 150.0 70.0 Bennett Landman landman@jhu.edu John Bogovic bogovic@jhu.edu 1.9 Converts a 4D Slab Collection produced with "VolCollect_to_Combined4DSlabCollect" to a VolumeCollection. Can optionally produce a single 4D volume with the 4th dimension containing the original volumes. Converts a 4D Slab Collection produced with "VolCollect_to_Combined4DSlabCollect" to a VolumeCollection. Can optionally produce a single 4D volume with the 4th dimension containing the original volumes. http://www.nitrc.org/projects/jist/ Johns Hopkins University Combined4DSlabCollect_to_VolCollect edu.jhu.ece.iacl.plugins.utilities.volume.CombinedSlabCollectionToVolumeCollection false Algorithm Information false true true Use 4D Output false true -1 -1 -1 -1 tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 vtk 16 false Output FileVolume Collection false true true 0 File Collection false true FileCollection_To_VolumeCollection 70.0 150.0 196.0 898.0 196.0 898.0 150.0 70.0 Algorithm Information false true -1 -1 -1 -1 tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 vtk 16 true Output File Collection false true -1 -1 -1 6 tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 vtk 16 Tensor Volume (4D) false true Tensor_Compute_DTI_Contrasts 70.0 150.0 301.0 994.0 301.0 994.0 150.0 70.0 http://sites.google.com/site/bennettlandman/ Bennett Landman landman@jhu.edu Basser, PJ, Jones, DK. "Diffusion-tensor MRI: Theory, experimental design and data analysis - a technical review." NMR Biomed 2002; 15(7-8):456-67 1.9 Estimates tensor contrasts. Estimates tensor contrasts.By default, estimates Mean Diffusion (MD), Fractional Anisotropy (FA), and the primary eigenvector (VEC1). Can optionally output all eigenvalues/vectors, as well as Relative Anisotropy (RA), and Volume Ratio (VR). http://www.nitrc.org/projects/jist/ Johns Hopkins University, Department of Biomedical Engineering Tensor_Compute_DTI_Contrasts edu.jhu.ece.iacl.plugins.dti.DWITensorContrasts false Algorithm Information false true <none> RA.VR 0 Additional Anisotropies: false true <none> Eigen vectors/values 0 Additional Eigen-Contrasts: false true -1 -1 -1 1 FLOAT tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 vtk 16 FA false true -1 -1 -1 1 tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 vtk 16 Scalar Weight Volume (3D) false true Tensor_Compute_Color_Encoded_Map 70.0 150.0 269.0 1113.0 269.0 1113.0 150.0 70.0 http://sites.google.com/site/bennettlandman/ Bennett Landman landman@jhu.edu Basser, PJ, Jones, DK. "Diffusion-tensor MRI: Theory, experimental design and data analysis - a technical review." NMR Biomed 2002; 15(7-8):456-67 1.7 Create an RGB colormap image from a scalar intensity weighted by a vector. Create an RGB colormap image from a scalar intensity weighted by a vector.Use a scalar volume (intensity in [0,1] to weight a vector volume (4-D, 4th dimension = x,y,z, in [-1 1]) to create a single RGB color volume. This is typically used with an FA weight an PEV vector. http://www.nitrc.org/projects/jist/ Johns Hopkins University, Department of Biomedical Engineering Tensor_Compute_Color_Encoded_Map edu.jhu.ece.iacl.plugins.dti.DWITensorColorEncodedMap false Algorithm Information false true -1 -1 -1 3 tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 vtk 16 Vector direction to encoded color (4D) false true -1 -1 -1 3 tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 vtk 16 VEC1 false true -1 -1 -1 -1 1 COLOR tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 vtk 16 RGB false true Execution Time false true 0 edu.jhu.ece.iacl.plugins.dti.DWITensorColorEncodedMap 1.1 1ee12683-c30a-4436-b999-986f8d4181aa Algorithm true true DTI.Contrasts IACL Tensor_Compute_Color_Encoded_Map false true 0 edu.jhu.ece.iacl.plugins.dti.DWITensorColorEncodedMap 1.1 f99dfd35-5d67-4e9b-8566-88ef2e073dc2 Algorithm true true Base Tensor_Compute_Color_Encoded_Map false true -1 -1 -1 -1 1 tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 vtk 16 MD false true -1 -1 -1 1 tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 vtk 16 RA false false -1 -1 -1 1 tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 vtk 16 VR false false -1 -1 -1 3 tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 vtk 16 Evals false false -1 -1 -1 3 tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 vtk 16 VEC2 false false -1 -1 -1 3 tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 vtk 16 VEC3 false false Execution Time false true 0 edu.jhu.ece.iacl.plugins.dti.DWITensorContrasts 1.1 b0ad4cff-9a74-4c74-b4a6-4a302fe4795e Algorithm true true DTI.Contrasts IACL Tensor_Compute_DTI_Contrasts false true 0 edu.jhu.ece.iacl.plugins.dti.DWITensorContrasts 1.1 0a79b27d-86e9-4562-be80-785f965ff6d8 Algorithm true true Base Tensor_Compute_DTI_Contrasts false true 0 Execution Time false true 3 edu.jhu.ece.iacl.plugins.utilities.file.FileCollectionToVolumeCollection 1.1 bdbfce7a-2f2a-4030-ad9a-3da6eade5142 Algorithm true true Utilities.File IACL FileCollection_To_VolumeCollection false true 3 edu.jhu.ece.iacl.plugins.utilities.file.FileCollectionToVolumeCollection 1.1 ce083bff-c992-4203-b4de-9c3546c5fb89 Algorithm true true Base FileCollection_To_VolumeCollection false true -1 -1 -1 -1 1 tif tiff lsm stk jpeg jpg bmp gif pict pic png psd dib tga xbm xpm xml pcx ico cur mgh mgz raw img nii nhdr nrrd ima dcm bin map mnc avi imc oly qt mov head brik ics ids hdr spm fits dm3 tmg mrc wu sig gedno log ct info info~ voi afni par parv2 rec frec jp2 vtk 16 4D Output (optional) false false Execution Time false true 4 edu.jhu.ece.iacl.plugins.utilities.volume.CombinedSlabCollectionToVolumeCollection 1.1 9db891fe-c511-42b0-94b2-437d6aa4a6df Algorithm true true Utilities.Volume IACL Combined4DSlabCollect_to_VolCollect false true 4 edu.jhu.ece.iacl.plugins.utilities.volume.CombinedSlabCollectionToVolumeCollection 1.1 74d8d051-023a-4b83-81dc-3013fcfdc64d Algorithm true true Base Combined4DSlabCollect_to_VolCollect false true -1 Execution Time false true 3 edu.jhu.ece.iacl.plugins.utilities.file.FileCollectionToVolumeCollection 1.1 09ad50bf-ba41-432a-8e97-f2a89fa4b4dd Algorithm true true Utilities.File IACL FileCollection_To_VolumeCollection false true 3 edu.jhu.ece.iacl.plugins.utilities.file.FileCollectionToVolumeCollection 1.1 08a5b7a7-8a8f-497d-9571-6cd36635d668 Algorithm true true Base FileCollection_To_VolumeCollection false true -1 Execution Time false true 0 edu.jhu.ece.iacl.plugins.dti.DWITensorEstLLMSE 1.1 0d6b2cb1-b228-4948-a219-8e73eda67b10 Algorithm true true Modeling.Diffusion IACL Tensor_Estimation_LLMSE false true 0 edu.jhu.ece.iacl.plugins.dti.DWITensorEstLLMSE 1.1 b00e5b87-a794-4be1-80cf-97ed141e1085 Algorithm true true Base Tensor_Estimation_LLMSE false true -1 Execution Time false true 4 edu.jhu.ece.iacl.plugins.utilities.volume.VolumeCollectionToCombinedSlabCollection 1.1 283392d2-55a9-4296-b0f2-1077a8e2f036 Algorithm true true Utilities.Volume IACL VolCollect_to_Combined4DSlabCollect false true 3 edu.jhu.ece.iacl.plugins.utilities.volume.VolumeCollectionToCombinedSlabCollection 1.1 4a165abc-481a-4fa9-a9d1-17f210e780fd Algorithm true true Base VolCollect_to_Combined4DSlabCollect false true -1 Execution Time false true 3 edu.jhu.ece.iacl.plugins.utilities.file.FileCollectionToVolumeCollection 1.1 caafd9f5-8155-4250-b848-21638a027a0c Algorithm true true Utilities.File IACL FileCollection_To_VolumeCollection false true 3 edu.jhu.ece.iacl.plugins.utilities.file.FileCollectionToVolumeCollection 1.1 55f62cb5-179a-4fc9-b954-c180b5089055 Algorithm true true Base FileCollection_To_VolumeCollection false true -1 Execution Time false true 0 edu.jhu.ece.iacl.plugins.registration.MedicAlgorithmEfficientFileCollectionRegistration 1.1 feabe35a-abfd-4fff-831b-fe42aae40619 Algorithm true true 0 Base Main false true 0 Base Advanced false true Registration IACL FileColReg false true 0 edu.jhu.ece.iacl.plugins.registration.MedicAlgorithmEfficientFileCollectionRegistration 1.1 fff594de-bec7-4c90-957e-1a7081f29844 Algorithm true true Base FileColReg false true -1 -1 Execution Time false true 0 edu.jhu.ece.iacl.plugins.utilities.file.FileCollectionToVolumeCollection 1.1 ebb3c633-e65f-4161-a672-11cc9ddb4d4d Algorithm true true Utilities.File IACL FileCollection_To_VolumeCollection false true 0 edu.jhu.ece.iacl.plugins.utilities.file.FileCollectionToVolumeCollection 1.1 aa175d3b-9b72-4c85-9ce7-918a3af4e4cf Algorithm true true Base FileCollection_To_VolumeCollection false true -1 true Register b0's ? false true Execution Time false true 0 edu.jhu.ece.iacl.plugins.dti.ComputeMeanB0 1.1 7c752e09-dafe-4618-9d8f-1e996413a9d0 Algorithm true true DTI IACL Mean_B0 false true 0 edu.jhu.ece.iacl.plugins.dti.ComputeMeanB0 1.1 b58ebe40-6e6b-4139-a6f9-d0b4bfb35122 Algorithm true true Base Mean_B0 false true -1 Algorithm Calculation 19:00:03 19:00:03 62 2 11 11:32:04 11:32:04 58 Execution Time false true 0 edu.jhu.ece.iacl.plugins.dti.DWICombineBvalTables 1.1 3298f777-7bce-4cb1-a5d6-203631fb22d0 Algorithm true true DTI IACL Combine_b0_Lists false true 0 edu.jhu.ece.iacl.plugins.dti.DWICombineBvalTables 1.1 8e1596ce-df83-4f51-a84a-8bfba8bfd664 Algorithm true true Base Combine_b0_Lists false true