Release Name: Anima v3.0

ISBI 2018 release of Anima (new relaxometry tools and major bug fixes)

Binary versions are compiled for Fedora 25 (64 bits) and above, Ubuntu 16.04 (64 bits) and above, OSX 10.9 (Mavericks) and above, and Windows 7 (64 bits) and above. For more recent versions or if these binaries do not work on your OS, please build them from source (refer to the wiki for this).

Please refer to the documentation wiki for more details on how to use those tools.

Among new things are the following:
  • New T2 and B1 estimation of mono-component T2 relaxation times from relaxometry sequences
  • New multi-compartment T2 and myelin water fraction estimation tools from relaxometry sequences
  • Update tractography algorithms (probabilistic tractography does not use DWI images anymore, output compatible with medInria 3.0)
  • Add Taquet et al similarity metrics for multi-tensors registration
  • Correct border handling errors in DTI and MCM registration algorithms
  • Add isosurface extraction tool from binary segmentation
  • Correct rare errors in DTI estimation filter
  • Update Eddy current experimental tool to handle well movement correction and distortion (the first one being applied to gradients, not the second one)
  • Other minor bug corrections/evolutions