Initial release of Anima scripts, a set of scripts that use Anima to perform complex preprocessing and core processing tasks on
medical images. This repository is multi-platform for most scripts
(as long as python is available for your system), except for
atlasing scripts that require Linux and an OAR scheduler.
This initial release contains the following scripts:
- Atlas-based brain extraction
- Atlas creation from anatomical or DTI images
- Diffusion images pre-processing and multi-compartment models
More details on the scripts are available on the documentation wiki.