[Mrtrix-discussion] Unable to build on RedHat 6.x

[J-Donald Tournier]

Hi Stuart,

Looks like the version of the GLU (GL utilities) library you have installed
on that system isn't the right one for your architecture - maybe you're
trying to build a 64-bit version of MRtrix, but you only have the 32-bit
version of libGLU installed? Can you have a look through your list of
installed packages and make sure you have the necessary version of libglu
installed?

Cheers,
Donald

--
Dr J-Donald Tournier (PhD)

Senior Lecturer, Biomedical Engineering
Division of Imaging Sciences & Biomedical Engineering
King's College London

A: Department of Perinatal Imaging & Health, 1st Floor South Wing, St
Thomas' Hospital, London. SE1 7EH
T: +44 (0)20 7188 7118 ext 53613
W:
http://www.kcl.ac.uk/medicine/research/divisions/imaging/departments/biomedengineering

On 28 Jul 2014 11:42, "Luscombe, Stuart" <s.luscombe at ucl.ac.uk> wrote:

>  Hi,
>
>
>
> I am trying to build mrtrix for one of my users who is running Red Hat
> Enterprise 6.5. It keeps failing with the following error:
>
>
>
> [LB] bin/disp_profile
>
> [LB] bin/mrview
>
>
>
> ERROR: [LB] bin/disp_profile
>
>
>
> g++ -Wl,-rpath,$ORIGIN/../lib -Llib src/icon.o cmd/disp_profile.o
> src/dwi/renderer.o src/dwi/SH.o src/dwi/render_frame.o -lmrtrix-0_2_12
> -lgsl -lgslcblas -Wl,--export-dynamic -lgtkmm-2.4 -latkmm-1.6 -lgdkmm-2.4
> -lgiomm-2.4 -lpangomm-1.4 -lglibmm-2.4 -lcairomm-1.0 -lsigc-2.0
> -lgtkglext-x11-1.0 -lgdkglext-x11-1.0 -lGLU -lGL -lXmu -lXt -lSM -lICE
> -lgtk-x11-2.0 -lpangox-1.0 -lX11 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0
> -lpangoft2-1.0 -lgdk_pixbuf-2.0 -lpangocairo-1.0 -lcairo -lpango-1.0
> -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lglib-2.0 -lz -o
> bin/disp_profile
>
>
>
> failed with output:
>
>
>
> /usr/bin/ld: skipping incompatible
> /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../libGLU.so when searching
> for -lGLU
>
> /usr/bin/ld: skipping incompatible /usr/lib/libGLU.so when searching for
> -lGLU
>
> /usr/bin/ld: cannot find -lGLU
>
> collect2: ld returned 1 exit status
>
>
>
> STOP
>
>
>
> ERROR: [LB] bin/mrview
>
>
>
> g++ -Wl,-rpath,$ORIGIN/../lib -Llib src/mrview/display_area.o
> src/mrview/mode/normal.o src/mrview/window.o src/mrview/dialog/progress.o
> src/mrview/sidebar/roi_analysis.o
> src/mrview/sidebar/roi_analysis/roi_list.o src/mrview/texture.o
> src/dialog/file.o src/mrview/mode/base.o
> src/mrview/sidebar/tractography/roi_list.o src/icon.o
> src/dwi/tractography/mds.o src/mrview/dialog/opengl.o src/mrview/pane.o
> cmd/mrview.o src/mrview/sidebar/tractography/track_list_item.o
> src/mrview/sidebar/overlay.o src/mrview/sidebar/orientation_plot.o
> src/mrview/slice.o src/dwi/renderer.o
> src/mrview/sidebar/tractography/track_list.o
> src/mrview/sidebar/screen_capture.o src/dwi/tractography/file.o
> src/mrview/dialog/error.o src/mrview/sidebar/tractography.o
> src/mrview/dialog/properties.o src/dwi/render_frame.o src/dwi/SH.o
> src/mrview/sidebar/main.o src/mrview/image.o -lmrtrix-0_2_12 -lgsl
> -lgslcblas -Wl,--export-dynamic -lgtkmm-2.4 -latkmm-1.6 -lgdkmm-2.4
> -lgiomm-2.4 -lpangomm-1.4 -lglibmm-2.4 -lcairomm-1.0 -lsigc-2.0
> -lgtkglext-x11-1.0 -lgdkglext-x11-1.0 -lGLU -lGL -lXmu -lXt -lSM -lICE
> -lgtk-x11-2.0 -lpangox-1.0 -lX11 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0
> -lpangoft2-1.0 -lgdk_pixbuf-2.0 -lpangocairo-1.0 -lcairo -lpango-1.0
> -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lglib-2.0 -lz -o
> bin/mrview
>
>
>
> failed with output:
>
>
>
> /usr/bin/ld: skipping incompatible
> /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../libGLU.so when searching
> for -lGLU
>
> /usr/bin/ld: skipping incompatible /usr/lib/libGLU.so when searching for
> -lGLU
>
> /usr/bin/ld: cannot find -lGLU
>
> collect2: ld returned 1 exit status
>
>
>
> STOP
>
>
>
>
>
> All of the mesa-libGL* packages are up to date.
>
>
>
> I have also tried building on a machine running an older version of Red
> Hat, which did get a bit further initially but ultimately came back with
> the same error. Both machines are running proprietary AMD/Nvidia drivers.
>
>
>
> Many Thanks,
>
>
>
> --
> Stuart Luscombe
> Systems Administrator
> Dementia Research Centre / NIHR Queen Square Dementia Biomedical Research
> Unit
> 8-11 Queen Square
> London, WC1N 3BG
>
> E-mail: s.luscombe at ucl.ac.uk
> Phone: 0203 448 3875
>
>
>
> _______________________________________________
> Mrtrix-discussion mailing list
> Mrtrix-discussion at www.nitrc.org
> http://www.nitrc.org/mailman/listinfo/mrtrix-discussion
>
>
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