[Neurobureau-hubs] brainhacker school

Tue Jan 20 11:23:26 PST 2015

Here is a link to a shorter non-imaging course - teaching and practical
parts with the aim to publish papers from large datasets.

http://alzheimer.ucdavis.edu/fhpsych/

I think the general idea is great and I've been advocating for brainhack to
move toward this model, but it has never gotten any traction. With a model
that encourages productivity, funding can be more easily obtained.

Best Regards, Donald McLaren
=================
D.G. McLaren, Ph.D.
Research Fellow, Department of Neurology, Massachusetts General Hospital and
Harvard Medical School
Postdoctoral Research Fellow, GRECC, Bedford VA
Website: http://www.martinos.org/~mclaren
Office: (773) 406-2464
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On Tue, Jan 20, 2015 at 2:08 PM, Alexandre Franco <eng.franco at gmail.com>
wrote:

> Yeah, it was intense. And it was only lectures.
>
> If we would use this schedule as an initial guide, we would certainly have
> to update it and include some hands-on time.
>
>
> On Jan 20, 2015, at 17:04, rbrto <robertotoro at gmail.com> wrote:
>
> > it's quite a lot of lectures....  is there any practical part ?
> >
> > On Tue, Jan 20, 2015 at 7:16 PM, Alexandre R Franco
> > <eng.franco at gmail.com> wrote:
> >> This is what Cameron is talking about:
> >>
> http://www.ipam.ucla.edu/programs/summer-schools/summer-school-mathematics-in-brain-imaging/?tab=schedule
> >>
> >>
> >>
> >>
> >> On Jan 20, 2015, at 3:50 PM, Cameron Craddock <
> cameron.craddock at gmail.com>
> >> wrote:
> >>
> >> I would like to being back the old mathmatics in brain imaging format.
> That
> >> was two weeks and well attended.
> >>
> >> Sent from my iPhone
> >>
> >> On Jan 20, 2015, at 12:43 PM, rbrto <robertotoro at gmail.com> wrote:
> >>
> >> work to publish a paper? like the 1 month things at Santa Fe institut
> >> for complex systems... People were very happy to come, because they
> >> would have a paper by the end of the month
> >>
> >> On Tue, Jan 20, 2015 at 6:29 PM, Chris Filo Gorgolewski
> >> <krzysztof.gorgolewski at gmail.com> wrote:
> >>
> >> This is a pretty cool idea, but Mike is right - we need to figure out
> how to
> >> make it easy for participants to convince their supervisors to get
> funding
> >> for this.
> >>
> >> Best,
> >> Chris
> >>
> >> On Mon Jan 19 2015 at 7:37:37 AM rbrto <robertotoro at gmail.com> wrote:
> >>
> >> I want 12 months a year of that...
> >>
> >> On Mon, Jan 19, 2015 at 4:09 PM, Pierre Bellec
> >> <pierre.bellec at criugm.qc.ca> wrote:
> >>
> >> @Cameron agreed, 2 weeks is more realistic.
> >>
> >> @Daniel, re Banff, there have an on-going program to host workshops in
> >> mathematics. They may have a long workshop format, I'll look into it.
> >> For
> >> locations, the problem is not much different than hosting a traditional
> >> brainhack, with maybe more emphasis on local attendants.
> >>
> >> @Roberto
> >> Re Nifti, that's recoding nii2mnc, or even re-inventing the minc format.
> >> Looks like some folks are taking this task seriously:
> >>
> >>
> http://www.frontiersin.org/10.3389/conf.fninf.2013.09.00069/event_abstract
> >>
> >> Re FSL, you never know what we'll discover.
> >> http://youtu.be/HdWRTleizFU?t=10m54s
> >>
> >> Re HCP, trying to test the level of actual security of their database
> >> may
> >> indeed be interesting & useful.
> >>
> >> Now, regarding what this brainhack school would look like, I guess it
> >> would
> >> be like a longer version of brainhack, with most of the time devoted for
> >> attendants to work on their own projects, self-initiated and managed. We
> >> would still have well identified education talks & experts of various
> >> tools
> >> available onsite, some general (version control, programming) and some
> >> more
> >> specialized (e.g. AFNI), again very much like brainhack. We could also
> >> have
> >> some more maker-oriented resources, such as 3D printing, EEG set, or
> >> even an
> >> MRI depending on the location (I am pretty sure this could be arranged
> >> in
> >> Montreal or Leipzig for example). Maybe even a vibrating shirt, who
> >> knows.
> >> In two weeks, participants may be able to take advantage of the
> >> availability
> >> of large datasets and computational resources, which has not been the
> >> case
> >> in the short version of brainhack. Also, unlike the short brainhack,
> >> participants may be able to actually deliver a concrete output. Finally,
> >> the
> >> event should be family friendly for obvious reasons :) I'm sure my kids
> >> could totally work their way through a two weeks lego projects,
> >> especially
> >> if we throw in some quadropters as well.
> >>
> >>
> >> Pierre Bellec
> >> http://simexp-lab.org/brainwiki/doku.php?id=pierrebellec
> >> Telephone              (1) 514 713 5596
> >> SIMEXP lab            http://simexp-lab.org
> >>
> >> On Mon, Jan 19, 2015 at 8:13 AM, rbrto <robertotoro at gmail.com> wrote:
> >>
> >> Yes!! Brainhacker school!! We teach people to read the nifti data
> >> directly from the file with an hex editor, p0wn the unused fields and
> >> write the results in new fancy formats!!! Make FSL do new types of
> >> analyses by using buffer overflows, etc :)
> >> I'm already loving it!!
> >> (anyone tried sql injection in HCP??)
> >>
> >> On Mon, Jan 19, 2015 at 1:28 PM, Daniel Margulies
> >> <daniel.margulies at gmail.com> wrote:
> >>
> >> I love the idea, Pierre,
> >>
> >> Any leads on the possibility of doing this as a retreat at the Banff
> >> Center?
> >> Perhaps there are other locations that might be possible as well?
> >>
> >> Daniel
> >>
> >> On Mon, Jan 19, 2015 at 4:21 AM, Pierre Bellec
> >> <pierre.bellec at criugm.qc.ca>
> >> wrote:
> >>
> >>
> >> Hi guys,
> >>
> >> Just ran into this:
> >> https://www.hackerschool.com/
> >>
> >> We should probably try to organize a summer brainhacker school
> >> modeled
> >> after this. 3 months is a tad long, but one month could be doable,
> >> especially if we get, say, the banff center to host the event.
> >>
> >> Best,
> >>
> >> Pierre Bellec
> >> http://simexp-lab.org/brainwiki/doku.php?id=pierrebellec
> >> Telephone              (1) 514 713 5596
> >> SIMEXP lab            http://simexp-lab.org
> >>
> >>
> >>
> >>
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