[Repronim-trd3] rapid development: can't make today's meetup :-/

Yaroslav O Halchenko yoh at onerussian.com
Thu Aug 22 10:07:11 PDT 2019


Dear TRD3ers

Sorry for the super late notice but due to some family medical
reasons I would not be able to make it today.  I will be back online
hopefully later on around 3pm (for another meetup).

If you guys could meetup and update each other on any recent developments.  In
my case I did try another "reproman run" but ran into another issue I am yet to
troubleshoot and possibly  report.  A glimpse of it is below if Kyle has an
idea right away (e.g. me again forgetting about some known issue again):

2019-08-21 15:24:06,119 [INFO   ] Waiting on job 1853: running 
2019-08-21 15:24:16,335 [INFO   ] Fetching results for 20190821-151159-42a7 
2019-08-21 15:26:26,193 [INFO   ] Creating run commit in /home/yoh/proj/repronim/reproman-master/docs/usecases/bids-fmriprep-workflow-NP/out9 
2019-08-21 15:26:35,947 [INFO   ] Unregistered job 20190821-151159-42a7                                         
+ reproman_run --jp container=containers/bids-mriqc --input data/bids --output data/mriqc '{inputs}' '{outputs}' group
+ CMD=(reproman run --follow -r "${RM_RESOURCE}" --sub "${RM_SUB}" --orc "${RM_ORC}" "$@")
+ echo 'CMD: reproman' run --follow -r smaug --sub condor --orc datalad-pair-run --jp container=containers/bids-mriqc --input data/bids --output data/mriqc '{inputs}' '{outputs}' group
CMD: reproman run --follow -r smaug --sub condor --orc datalad-pair-run --jp container=containers/bids-mriqc --input data/bids --output data/mriqc {inputs} {outputs} group
+ reproman run --follow -r smaug --sub condor --orc datalad-pair-run --jp container=containers/bids-mriqc --input data/bids --output data/mriqc '{inputs}' '{outputs}' group
2019-08-21 15:26:38,223 [INFO   ] No root directory supplied for smaug; using '/home/yoh/.reproman/run-root' 
[INFO   ] Publishing <Dataset path=/home/yoh/proj/repronim/reproman-master/docs/usecases/bids-fmriprep-workflow-NP/out9/data/mriqc> to smaug 
ECDSA host key for IP address '129.170.233.9' not in list of known hosts.
[INFO   ] Publishing <Dataset path=/home/yoh/proj/repronim/reproman-master/docs/usecases/bids-fmriprep-workflow-NP/out9> to smaug 
[ERROR  ] failed to push to smaug: master -> smaug/master [rejected] (non-fast-forward); pushed: ['29ceb75..0f103dd'] [publish(/home/yoh/proj/repronim/reproman-master/docs/usecases/bids-fmriprep-workflow-NP/out9)] 
2019-08-21 15:27:28,017 [ERROR  ] 'datalad publish' failed. Try running 'datalad update -s smaug --merge --recursive' first [orchestrators.py:prepare_remote:792] (OrchestratorError) 
CONTAINERS_REPO=~/proj/repronim/containers INPUT_DATASET_REPO=    49.79s user 12.99s system 6% cpu 15:44.20 total

-- 
Yaroslav O. Halchenko
Center for Open Neuroscience     http://centerforopenneuroscience.org
Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755
Phone: +1 (603) 646-9834                       Fax: +1 (603) 646-1419
WWW:   http://www.linkedin.com/in/yarik        


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