Free For Non-Commercial Use Only
Yes
University of Minnesota, and Harvard Medical School / MGH
NITRC
Diffusion MRI Orientation Distribution Function in Constant Solid Angle (CSA-ODF) and Hough-Transform Tractography
OS Independent
Yes
MATLAB
This is a diffusion-weighted MRI processing Matlab toolbox (including binaries), which can be used to:
• Compute the Q-Ball Imaging Orientation Distribution Function in Constant Solid Angle (CSA-ODF) (Aganj et al, MRM 2010).
• Perform Hough-transform tractography (Aganj et al, MedIA 2011).
• Visualize ODFs and tracts, and export them for further analysis.
• Verify the correctness of the diffusion gradient table (Aganj, Sci Rep 2018).
• Compute and interactively visualize the connectivity matrix.
• Augment the connectivity matrix with indirect connections (Aganj et al, ISMRM 2014).
For short tutorials, see EXAMPLE.m and EXAMPLE_CLI.m. If available, GPUs can be used for speed-up.
2017-4-12
Linux 64-bit binary
2017-4-12
Windows 64-bit binary
2017-4-11
Matlab codes
Diffusion MRI Orientation Distribution Function in Constant Solid Angle (CSA-ODF) and Hough-Transform Tractography
Connectivity Analysis, Diffusion MR Fiber Tracking, Algorithm or Reusable Library, Diffusion Application, Q-Ball, MR, Computational Neuroscience, Free For Non-Commercial Use Only, OS Independent, MATLAB
http://www.nitrc.org/projects/csaodf-hough/, http://http://www.nitrc.org/projects/csaodf-hough