GNU General Public License (GPL) Yes NITRC Rodent Cortical Thickness Analysis Yes Juan Prieto RodentThickness is an automatic cortical thickness measurement tool for rat brains. The pipeline consists of four steps: preprocessing to create binary mask and label map, thickness measurement which produces laplacian field and thickness map in order, run particle correspondence followed by statistical analysis resulting in mean thickness color map and t-test result. By running RodentThickness, you will need to fill in informations in a Graphical User Interface, and then compute. You can also run the tool in command line without using the GUI. Using the GUI, you will be able to save or load a dataset file or a configuration file. The tool needs these other tools to work, so be sure to have these installed on your computer: ImageMath measureThicknessFilter GenParaMeshCLP ParaToSPHARMMeshCLP ShapeWorksRun ShapeWorksGroom SegPostProcessCLP BinaryToDistanceMap MeshPointsIntensitysampling 2013-7-26 Rodent Thickness Package_v1.1 2013-6-12 Rodent Thickness Package_v1.0 Rodent Cortical Thickness Analysis MR, Microscopy, GNU General Public License (GPL), Huntington Disease http://www.nitrc.org/projects/rodentthickness/, http://www.nitrc.org/projects/rodentthickness/ jprieto@med.unc.edu