Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
857360
2
Nilearn
484418
3
ITK-SNAP
408284
4
FCP/INDI PRIVATE SITE
276189
5
1000 Functional Connectomes Project
171047
6
IIT Human Brain Atlas (v.5.0)
148961
7
MRIcroGL
146520
8
CONN : functional connectivity toolbox
145574
9
DTI-TK
87937
10
BrainNet Viewer
83080
11
IBSR
70571
12
Multi-Modal MRI Reproducibility Resource
59032
13
WFU_PickAtlas
58752
14
BioImage Suite
52094
15
age-ility
48155
16
BXH/XCEDE Tools
44038
17
PANDA: a pipeline tool for diffusion MRI
40813
18
EEGLAB
39647
19
Solar Eclipse Imaging Genetics tools
39074
20
The Neuro Bureau
38176
21
JIST: Java Image Science Toolkit
37979
22
FreeSurfer
37842
23
Waxholm Space Atlas of the Sprague Dawley Rat Brain
37405
24
TOADS-CRUISE Brain Segmentation Tools
36031
25
GIFTI
34873
26
fNIRS Data Analysis Environment
32705
27
Functional Imaging BIRN
32394
28
Generalized PPI Toolbox
30432
29
NITRC Computational Environment (NITRC-CE)
28498
30
3T DWI test-retest reliability dataset
27994
31
BrainMap Database
24917
32
NIDB - Neuroinformatics Database
23615
33
Homer2
22867
34
BIDScoin
21898
35
NeuroDebian
21322
36
Network-Based Statistic (NBS)
20811
37
fMRI-CPCA
20606
38
Anima
20566
39
BrainVisa Morphologist extensions
20345
40
NYU CSC TestRetest
19705
41
UNC 0-1-2 Infant Atlases
18163
42
Mango
17352
43
MITK Diffusion
17057
44
XNAT Extras
16997
45
Neuroimaging Made Easy Blog
16067
46
Automatic Registration Toolbox
15323
47
GRETNA
15055
48
3D Slicer
14454
49
Data Format Tools
14429
50
Surf Ice
14188
51
Freesurfer fsaverage
13883
52
Talairach Daemon
13819
53
Spatially Constrained Parcellation
13744
54
Diffusion Toolkit / TrackVis
13645
55
QuickNII - Serial section aligner to volumetric atlases
13615
56
Brainstorm
13486
57
Vaa3D and Vaa3D-Neuron
13370
58
Brain Biomechanics Imaging Resources
13363
59
SRI24 Atlas: Normal Adult Brain Anatomy
12719
60
DCP：Diffusion Connectome Pipeline
12554
61
dcm2nii
12532
62
libminc - Medical Image NetCDF library
12506
63
CBS High-Res Brain Processing Tools
12477
64
Group ICA Toolbox (GIFT and EEGIFT)
12271
65
MRtrix
12256
66
Melbourne Subcortex Atlas
12215
67
BrainMask Volume Processing Tool
11789
68
Computational Morphometry Toolkit (CMTK)
11544
69
FSL
11386
70
Artifact Detection Tools (ART)
11368
71
3DSlicerLupusLesionModule
11337
72
DWI/DTI Quality Control Tool: DTIPrep
11097
73
CANDI Neuroimaging Access Point
10995
74
Subject Order-Independent Group ICA
10905
75
BrainSuite
10817
76
TumorSim
10800
77
2008 MICCAI MS Lesion Segmentation Challenge
10785
78
Human Imaging Database (HID)
10778
79
BrainVISA
10766
80
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
10426
81
Hammer And WML Modules for 3D Slicer
10364
82
NeuroImaging Analysis Kit (NIAK)
10184
83
NODDI Matlab Toolbox
9686
84
SPM for fNIRS toolbox
9669
85
Source Information Flow Toolbox
9635
86
Diffusional Kurtosis Estimator
9499
87
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
9273
88
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
9271
89
4D UNC Neonatal and Infant Cortical Surface Atlases
9202
90
NIRS-KIT: A MATLAB toolbox for both task and resting-state fNIRS data analysis
9064
91
NIfTI
9006
92
CBICA: Cancer Imaging Phenomics Toolkit (CaPTk)
8887
93
ENIGMA-DTI pipeline
8739
94
Task Independent Fluctuations Discussion
8548
95
SPHARM-PDM Toolbox
8515
96
MARS (Multi-Atlas Robust Segmentation)
8269
97
Robust Brain Extraction (ROBEX)
8161
98
Awake Rat rsfMRI Database
8071
99
iBEAT
7934
100
Center for Functional Neuroimaging Tech
7677