[#9103] No file "run_afni_pipeline.py"

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State: more information
Open
Date:
2018-05-21 20:23
Priority: more information
3
Submitted By:
Delin Sun (sundelin)
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Nobody (None)
Hardware: 
Macintosh
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None
Operating System: 
MacOS X
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Severity: 
major
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Summary: more information
No file "run_afni_pipeline.py"

Detailed description

Dear Developers,

We are now trying to analyz resting-state fMRI following your ENIGMA resting-state docker pipeline. We have successfully installed the docker image of bepipelinepub/pipeline_afni_ants_scripts in our Mac (macOS Sierra), and followed the pdf instructions to organize the test data and run analyses. However, we are stucked at the very beginning of docker afni analyses: we met the error message as shown in the attached screen snapshot. It seems that there is no such a file called "run_afni_pipeline.py" in the container.
Would you please give us some hint about how to resolve the problem is? Greatly appreciate!

Bests,
Delin Sun, PhD
Duke University

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File Added953: Screen Shot 2018-05-21 at 12.09.16 PM.png2018-05-21 20:23sundelin