Hello,

I am trying to run a the script called "singlesubjectVMHC.sh" also known as SCRIPT TO CALCULATE VOXEL-MIRRORED HOMOTOPIC CONNECTIVITY.

When I run this script in terminal (AFNI) - I always get this error output "env: bash\r: No such file or directory".  

I think it is because I received this script from someone who downloaded it from a Windows computer and I use a Mac computer?
I read the solution is to convert the script using the command dos2unix but for some reason terminal "can't find package"
even when I type sudo apt-get install dos2unix.  I also tried tr - but I really have idea how that works or what the proper command is.

Can you please offer any suggestions?  I attached the script to this message.

Also - have you seen this script before?  I've noticed it's not in your fconn download batch?

Thanks

Rowen

(For "AFNI" above, please substitute "1000 Functional Connectomes" or otherwise, as appropriate.)

Also - I don't see this script in any NITRC downloads.

This appears to be a Windows encoding error; try:




and then running singlesubjectVMHC (2).sh.

You might have better luck with future questions in our forum (http://www.nitrc.org/forum/forum.php?for...) or through the AFNI resources (http://www.nitrc.org/projects/afni/).  This tracker is intended for NITRC-specific issues and any help with other issues will be through pure luck. :)