Date: 2019-11-28 13:55 |
Priority: more information 3 |
Submitted By:
hannasofia (hannasofia)
|
Assigned To: more information
Nobody (None) |
Hardware: Macintosh | Product: None |
Operating System: MacOS X | Component: None |
Version: None | Severity: major |
Summary: more information Adding a lesion mask |
Detailed description |
Hi,
Im planning to use the Clinical toolbox in order to mask out stroke
lesions. I have used itk Snap to mask out lesions, but I am not
sure how to add this mask into the clinical toolbox so that the
normalization will mask out the lesion.
Itk snap creates a segmentation of the lesion which may be saved as
a nifti file. I have read the manual but still can´t really
understand how to enter this into the clinical toolbox.
Is it enough if I add the lesion/segmentation (not drawn on any T1
or T2 image) into "lesion maps" in the Batch editor? How do I know
if it works? Should I somehow instruct SPM to avoid the values
where the segmentation is and how would I do that? I Please see
attached file.
Thank you in advance!
/Hanna
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Details | Hi,
Im planning to use the Clinical toolbox in order to mask out stroke
lesions. I have used itk Snap to mask out lesions, but I am not
sure how to add this mask into the clinical toolbox so that the
normalization will mask out the lesion.
Itk snap creates a segmentation of the lesion which may be saved as
a nifti file. I have read the manual but still can´t really
understand how to enter this into the clinical toolbox.
Is it enough if I add the lesion/segmentation (not drawn on any T1
or T2 image) into "lesion maps" in the Batch editor? How do I know
if it works? Should I somehow instruct SPM to avoid the values
where the segmentation is and how would I do that? I Please see
attached file.
Thank you in advance!
/Hanna | 2019-11-28 15:11 | hannasofia |
Details | Hi,
Im planning to use the Clinical toolbox in order to mask out stroke
lesions. I have used itk Snap to mask out lesions, but I am not
sure how to add this mask into the clinical toolbox so that the
normalization will mask out the lesion.
Itk snap creates a segmentation of the lesion which may be saved as
a nifti file. I have read the manual but still can´t really
understand how to enter this into the clinical toolbox.
Is it enough if I add the lesion/segmentation (not drawn on any T1
or T2 image) into "lesion maps" in the Batch editor? How do I know
if it works? Please see attached file.
Thank you in advance!
/Hanna | 2019-11-28 14:09 | hannasofia | |
|