Hi,
I have a project were I have elderly stroke patients. I have
segmented the lesion in ITK snap and saved the segmentation as a
Nifti file.
I want to use the clinical toolbox to account for the anatomy of an
elderly brain and mask out the lesion.
I´m adding the T1 image to "anatomicals" and the segmentation to
"lesion maps".
After this, I receive the following message;
The following modules did not run:
Failed: MR segment-normalize
I don´t know what I have done wrong. To the best of my
understanding, I have followed the manual for the clinical
toolbox.
Just to clarify, The segmentation nifit file is only the lesion,
it´s not saved upon a T1 image. And, in the same batch, I´m also
running realign & unwarp as well as Coregistration. (The realign &
unwarp and coregistration seemed to work out ok with no error
message).
Any help would be very much appreciated!
Thank you in advance,
Hanna
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