Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
857776
2
Nilearn
485199
3
ITK-SNAP
408511
4
FCP/INDI PRIVATE SITE
276629
5
1000 Functional Connectomes Project
171105
6
IIT Human Brain Atlas (v.5.0)
149213
7
MRIcroGL
146705
8
CONN : functional connectivity toolbox
145753
9
DTI-TK
87975
10
BrainNet Viewer
83179
11
IBSR
70593
12
Multi-Modal MRI Reproducibility Resource
59161
13
WFU_PickAtlas
58791
14
BioImage Suite
52146
15
age-ility
48225
16
BXH/XCEDE Tools
44082
17
PANDA: a pipeline tool for diffusion MRI
40836
18
EEGLAB
39650
19
Solar Eclipse Imaging Genetics tools
39160
20
The Neuro Bureau
38207
21
JIST: Java Image Science Toolkit
38019
22
FreeSurfer
37842
23
Waxholm Space Atlas of the Sprague Dawley Rat Brain
37492
24
TOADS-CRUISE Brain Segmentation Tools
36042
25
GIFTI
34949
26
fNIRS Data Analysis Environment
32731
27
Functional Imaging BIRN
32450
28
Generalized PPI Toolbox
30463
29
NITRC Computational Environment (NITRC-CE)
28555
30
3T DWI test-retest reliability dataset
28036
31
BrainMap Database
24957
32
NIDB - Neuroinformatics Database
23842
33
Homer2
22905
34
BIDScoin
22860
35
NeuroDebian
21363
36
Network-Based Statistic (NBS)
20849
37
fMRI-CPCA
20633
38
Anima
20607
39
BrainVisa Morphologist extensions
20359
40
NYU CSC TestRetest
19735
41
UNC 0-1-2 Infant Atlases
18181
42
Mango
17359
43
MITK Diffusion
17081
44
XNAT Extras
17023
45
Neuroimaging Made Easy Blog
16072
46
Automatic Registration Toolbox
15340
47
GRETNA
15066
48
3D Slicer
14461
49
Data Format Tools
14453
50
Surf Ice
14210
51
Freesurfer fsaverage
13885
52
Talairach Daemon
13832
53
Spatially Constrained Parcellation
13752
54
QuickNII - Serial section aligner to volumetric atlases
13695
55
Diffusion Toolkit / TrackVis
13660
56
Brainstorm
13488
57
Brain Biomechanics Imaging Resources
13434
58
Vaa3D and Vaa3D-Neuron
13404
59
SRI24 Atlas: Normal Adult Brain Anatomy
12723
60
DCP：Diffusion Connectome Pipeline
12568
61
dcm2nii
12536
62
libminc - Medical Image NetCDF library
12509
63
CBS High-Res Brain Processing Tools
12489
64
Group ICA Toolbox (GIFT and EEGIFT)
12289
65
MRtrix
12267
66
Melbourne Subcortex Atlas
12237
67
BrainMask Volume Processing Tool
11807
68
Computational Morphometry Toolkit (CMTK)
11568
69
FSL
11407
70
Artifact Detection Tools (ART)
11369
71
3DSlicerLupusLesionModule
11360
72
DWI/DTI Quality Control Tool: DTIPrep
11103
73
CANDI Neuroimaging Access Point
11014
74
Subject Order-Independent Group ICA
10912
75
BrainSuite
10846
76
TumorSim
10811
77
Human Imaging Database (HID)
10795
78
2008 MICCAI MS Lesion Segmentation Challenge
10785
79
BrainVISA
10770
80
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
10434
81
Hammer And WML Modules for 3D Slicer
10378
82
NeuroImaging Analysis Kit (NIAK)
10215
83
NODDI Matlab Toolbox
9689
84
SPM for fNIRS toolbox
9669
85
Source Information Flow Toolbox
9639
86
Diffusional Kurtosis Estimator
9513
87
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
9291
88
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
9289
89
4D UNC Neonatal and Infant Cortical Surface Atlases
9233
90
NIRS-KIT: A MATLAB toolbox for both task and resting-state fNIRS data analysis
9110
91
NIfTI
9018
92
CBICA: Cancer Imaging Phenomics Toolkit (CaPTk)
8891
93
ENIGMA-DTI pipeline
8763
94
Task Independent Fluctuations Discussion
8566
95
SPHARM-PDM Toolbox
8521
96
MARS (Multi-Atlas Robust Segmentation)
8279
97
Robust Brain Extraction (ROBEX)
8175
98
Awake Rat rsfMRI Database
8104
99
iBEAT
7945
100
Center for Functional Neuroimaging Tech
7690