[Mrtrix-discussion] csdeconv fail

[=?Big5?B?p/Wo2MBN?=]

D:\MRtrix>csdeconv dwi.mif -grad grad_GE.txt -lmax 2 -mask mask.mif
response.txt
 csd.mif -debug
csdeconv [INFO]: opening image "dwi.mif"...
csdeconv [DEBUG]: reading key/value file ".\dwi.mif"...
csdeconv [DEBUG]: sanitising transformation matrix...
csdeconv [DEBUG]: preparing file ".\dwi.mif"
csdeconv [DEBUG]: setting up image "dwi.mif"...
csdeconv [DEBUG]: sanitising transformation matrix...
csdeconv [DEBUG]: setting up data increments for "dwi.mif"...
csdeconv [DEBUG]: data increments initialised with start = 127, stride = [
-1 12
8 16384 1146880 ]
csdeconv [INFO]: opening image "mask.mif"...
csdeconv [DEBUG]: reading key/value file ".\mask.mif"...
csdeconv [DEBUG]: sanitising transformation matrix...
csdeconv [DEBUG]: preparing file ".\mask.mif"
csdeconv [DEBUG]: setting up image "mask.mif"...
csdeconv [DEBUG]: sanitising transformation matrix...
csdeconv [DEBUG]: setting up data increments for "mask.mif"...
csdeconv [DEBUG]: data increments initialised with start = 127, stride = [
-1 12
8 16384 ]
csdeconv [INFO]: found 14x4 diffusion-weighted encoding
csdeconv [INFO]: found 13 diffusion-weighted directions
csdeconv [INFO]: calculating even spherical harmonic components up to order
2
csdeconv [INFO]: setting response function from file "response.txt"
csdeconv [INFO]: setting response function using even SH coefficients: [
1091.7
-233.58 ]
csdeconv [INFO]: using initial filter coefficients: [ 1 1 ]
csdeconv [DEBUG]: mapping image "dwi.mif"...
csdeconv [DEBUG]: file ".\dwi.mif" mapped at 0x1610000, size 32112918
(read-only
)
csdeconv [DEBUG]: data mapper for image "dwi.mif" mapped with segment size
= 160
56320
csdeconv [DEBUG]: mapping image "mask.mif"...
csdeconv [DEBUG]: file ".\mask.mif" mapped at 0xfe0000, size 2294028
(read-only)

csdeconv [DEBUG]: data mapper for image "mask.mif" mapped with segment size
= 11
46880
csdeconv [INFO]: calculating even spherical harmonic components up to order
2 fo
r initialisation
csdeconv [INFO]: constrained spherical deconvolution initiated successfully
csdeconv [INFO]: creating image "csd.mif"...
csdeconv [DEBUG]: preparing file ".\csd.mif"
csdeconv [DEBUG]: setting up image ".\csd.mif"...
csdeconv [DEBUG]: sanitising transformation matrix...
csdeconv [DEBUG]: setting up data increments for ".\csd.mif"...
csdeconv [DEBUG]: data increments initialised with start = 0, stride = [ 6
768 9
8304 1 ]
csdeconv [DEBUG]: mapping image ".\csd.mif"...
csdeconv [DEBUG]: file ".\csd.mif" mapped at 0x34c0000, size 27525399
(read-writ
e)
csdeconv [DEBUG]: data mapper for image ".\csd.mif" mapped with segment
size = 6
881280 (optimised)
csdeconv [INFO]: launching 1 threads
csdeconv: performing constrained spherical deconvolution... 100%
csdeconv [INFO]: closing image "mask.mif"...
csdeconv [DEBUG]: unmapping file ".\mask.mif"




§õ¨ØÀM <lynnlee0226 at gmail.com> ©ó 2012¦~3¤ë9¤é¤U¤È11:02 ¼g¹D¡G

> Dear Ben,
>
> I'm running on winXP. I try this on three computers but still fail.
> I don't know what is different between my data sets. They were acquired
> and processed by the same way.
> The report about csdeconv -debug is as attached.
>
>
> Best,
> Lynn
>
> 2012/3/9 Jeurissen Ben <Ben.Jeurissen at ua.ac.be>
>
>>  Hi Lynn,****
>>
>> ** **
>>
>> With just the information you provided it is impossible to figure out
>> what went wrong.****
>>
>> ** **
>>
>> We might be able to get a better idea about the problem if you would run
>> csdeconv with the -info and -debug option and report the complete output as
>> well as the complete command that you issued on the command line.****
>>
>> ** **
>>
>> Also provide us as much information you can think of that might be
>> relevant:****
>>
>> **-          **What OS are you running?****
>>
>> **-          **Does it consistently fail on the same data sets? If so,
>> is there something different about the data sets that fail? E.g. larger
>> file size?****
>>
>> **-          **Does it still fail if you run it on another computer?****
>>
>> **-          **¡K****
>>
>> ** **
>>
>> Cheers,
>> Ben****
>>
>> ** **
>>
>> *From:* mrtrix-discussion-bounces at public.nitrc.org [mailto:
>> mrtrix-discussion-bounces at public.nitrc.org] *On Behalf Of *???
>> *Sent:* vrijdag 9 maart 2012 14:30
>> *To:* mrtrix-discussion at public.nitrc.org
>> *Subject:* [Mrtrix-discussion] csdeconv fail****
>>
>> ** **
>>
>> To whom it may concern****
>>
>> ** **
>>
>> I'm running MRtrix on Windows system. I acquired data using the same
>> scanner and pulse sequence, and performing the same processing and using
>> the same lmax. However, some data have error on running "csdeconv.exe", but
>> some are ok. ****
>>
>> ** **
>>
>> The error massage:****
>>
>> AppName: csdeconv.exe     AppVer: 0.0.0.0       ModName: ntdll.dll****
>>
>> ModVer: 5.1.2600.6055        Offset: 00010a19****
>>
>> ** **
>>
>> How would I correct the error? I am looking forward to receiving your
>> suggestions. Your response is highly appreciated.****
>>
>> ** **
>>
>> Best,****
>>
>> Lynn****
>>
>> _______________________________________________
>> Mrtrix-discussion mailing list
>> Mrtrix-discussion at www.nitrc.org
>> http://www.nitrc.org/mailman/listinfo/mrtrix-discussion
>>
>>
>
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