open-discussion
open-discussion > RE: DWIConvert
Apr 13, 2016 06:04 PM | Jacek M
RE: DWIConvert
Hi Martin,
I specified Input Dicom Data Directory and as a Output DWI Volume file I just selected "DWI Volume file" . I can only choose between "none" or "Rename Currect Diffusion Weigted Image" or "Create new...", "Create new as..." or "Delete ..."
So I got an following errors:
Found CommandLine Module, target is /Applications/Slicer.app/Contents/lib/Slicer-4.5/cli-modules/DWIConvert
ModuleType: CommandLineModule
DWIConverter command line:
/Applications/Slicer.app/Contents/lib/Slicer-4.5/cli-modules/DWIConvert --conversionMode DicomToNrrd --outputVolume /var/folders/7q/y90nswcn65sfpj6wt7h47p3c0000gn/T/Slicer/JDJ_vtkMRMLDiffusionWeightedVolumeNodeB.nrrd --inputDicomDirectory /Users/Jacek/Desktop/Tracula/dti_jacekmanko --useBMatrixGradientDirections --outputDirectory /Users/Jacek/Desktop --gradientVectorFile / --smallGradientThreshold 0.2
and this one too
DWIConverter standard error:
W: DcmItem: Length of element (6423,726d) is odd
E: DcmElement: Unknown Tag & Data (6423,726d) larger (778269289) than remaining bytes in file
E: DcmElement: Unknown Tag & Data (2020,3020) larger (808464430) than remaining bytes in file
E: DcmElement: Unknown Tag & Data (2020,3020) larger (808464430) than remaining bytes in file
/Users/..../Medphys_Asperger_20100213_s0008_i0001.dcm has no non-zero diffusion vectors
libc++abi.dylib: terminating with uncaught exception of type std::ios_base::failure: basic_filebuf::underflow error reading the file
DWIConverter terminated with an unknown exception.
I specified Input Dicom Data Directory and as a Output DWI Volume file I just selected "DWI Volume file" . I can only choose between "none" or "Rename Currect Diffusion Weigted Image" or "Create new...", "Create new as..." or "Delete ..."
So I got an following errors:
Found CommandLine Module, target is /Applications/Slicer.app/Contents/lib/Slicer-4.5/cli-modules/DWIConvert
ModuleType: CommandLineModule
DWIConverter command line:
/Applications/Slicer.app/Contents/lib/Slicer-4.5/cli-modules/DWIConvert --conversionMode DicomToNrrd --outputVolume /var/folders/7q/y90nswcn65sfpj6wt7h47p3c0000gn/T/Slicer/JDJ_vtkMRMLDiffusionWeightedVolumeNodeB.nrrd --inputDicomDirectory /Users/Jacek/Desktop/Tracula/dti_jacekmanko --useBMatrixGradientDirections --outputDirectory /Users/Jacek/Desktop --gradientVectorFile / --smallGradientThreshold 0.2
and this one too
DWIConverter standard error:
W: DcmItem: Length of element (6423,726d) is odd
E: DcmElement: Unknown Tag & Data (6423,726d) larger (778269289) than remaining bytes in file
E: DcmElement: Unknown Tag & Data (2020,3020) larger (808464430) than remaining bytes in file
E: DcmElement: Unknown Tag & Data (2020,3020) larger (808464430) than remaining bytes in file
/Users/..../Medphys_Asperger_20100213_s0008_i0001.dcm has no non-zero diffusion vectors
libc++abi.dylib: terminating with uncaught exception of type std::ios_base::failure: basic_filebuf::underflow error reading the file
DWIConverter terminated with an unknown exception.
Threaded View
Title | Author | Date |
---|---|---|
Jacek M | Apr 8, 2016 | |
Micah Johnson | Mar 22, 2018 | |
Daniel Berge | Mar 22, 2018 | |
Micah Johnson | Mar 22, 2018 | |
Daniel Berge | Mar 22, 2018 | |
Martin Styner | Mar 22, 2018 | |
Micah Johnson | Mar 22, 2018 | |
Micah Johnson | Mar 22, 2018 | |
Daniel Berge | Mar 22, 2018 | |
Micah Johnson | Mar 22, 2018 | |
Daniel Berge | Mar 22, 2018 | |
Micah Johnson | Mar 22, 2018 | |
Micah Johnson | Mar 22, 2018 | |
Ryan H | Jan 23, 2018 | |
Martin Styner | Jan 26, 2018 | |
Ryan H | Jan 26, 2018 | |
Martin Styner | Jan 26, 2018 | |
Ryan H | Jan 26, 2018 | |
Martin Styner | Jan 26, 2018 | |
Ryan H | Jan 26, 2018 | |
Martin Styner | Jan 29, 2018 | |
Ryan H | Jan 29, 2018 | |
Martin Styner | Jan 30, 2018 | |
Ryan H | Jan 30, 2018 | |
Martin Styner | Jan 31, 2018 | |
Ryan H | Feb 2, 2018 | |
Martin Styner | Feb 19, 2018 | |
Ryan H | Feb 19, 2018 | |
Martin Styner | Feb 21, 2018 | |
Ryan H | Jan 31, 2018 | |
Maike Kleemeyer | Jan 10, 2018 | |
Martin Styner | Jan 10, 2018 | |
Maike Kleemeyer | Jan 11, 2018 | |
Martin Styner | Jan 11, 2018 | |
Maike Kleemeyer | Jan 15, 2018 | |
Martin Styner | Jan 17, 2018 | |
Maike Kleemeyer | Jan 18, 2018 | |
Martin Styner | Jan 18, 2018 | |
Marie Drottar | Jun 7, 2016 | |
Jacek M | Apr 27, 2016 | |
Martin Styner | Apr 27, 2016 | |
Jacek M | Apr 15, 2016 | |
Martin Styner | Apr 15, 2016 | |
Micah Johnson | Mar 27, 2018 | |
Daniel Berge | Apr 2, 2018 | |
Micah Johnson | Apr 2, 2018 | |
Juan Prieto | Apr 8, 2016 | |
Jacek M | Apr 13, 2016 | |
Martin Styner | Apr 13, 2016 | |
Jacek M | Apr 13, 2016 | |
Martin Styner | Apr 8, 2016 | |