open-discussion > RE: DWIConvert
Apr 13, 2016  06:04 PM | Jacek M
RE: DWIConvert
Hi Martin,

I specified Input Dicom Data Directory and as a Output  DWI Volume file I just selected "DWI Volume file" . I can only choose between "none" or "Rename Currect Diffusion Weigted Image" or "Create new...", "Create new as..." or "Delete ..."

So I got an following errors:

Found CommandLine Module, target is /Applications/Slicer.app/Contents/lib/Slicer-4.5/cli-modules/DWIConvert
ModuleType: CommandLineModule
DWIConverter command line:

/Applications/Slicer.app/Contents/lib/Slicer-4.5/cli-modules/DWIConvert --conversionMode DicomToNrrd --outputVolume /var/folders/7q/y90nswcn65sfpj6wt7h47p3c0000gn/T/Slicer/JDJ_vtkMRMLDiffusionWeightedVolumeNodeB.nrrd --inputDicomDirectory /Users/Jacek/Desktop/Tracula/dti_jacekmanko --useBMatrixGradientDirections --outputDirectory /Users/Jacek/Desktop --gradientVectorFile / --smallGradientThreshold 0.2

and this one too

DWIConverter standard error:

W: DcmItem: Length of element (6423,726d) is odd
E: DcmElement: Unknown Tag & Data (6423,726d) larger (778269289) than remaining bytes in file
E: DcmElement: Unknown Tag & Data (2020,3020) larger (808464430) than remaining bytes in file
E: DcmElement: Unknown Tag & Data (2020,3020) larger (808464430) than remaining bytes in file
/Users/..../Medphys_Asperger_20100213_s0008_i0001.dcm has no non-zero diffusion vectors
libc++abi.dylib: terminating with uncaught exception of type std::ios_base::failure: basic_filebuf::underflow error reading the file
DWIConverter terminated with an unknown exception.

Threaded View

TitleAuthorDate
Jacek M Apr 8, 2016
Micah Johnson Mar 22, 2018
Daniel Berge Mar 22, 2018
Micah Johnson Mar 22, 2018
Daniel Berge Mar 22, 2018
Martin Styner Mar 22, 2018
Micah Johnson Mar 22, 2018
Micah Johnson Mar 22, 2018
Daniel Berge Mar 22, 2018
Micah Johnson Mar 22, 2018
Daniel Berge Mar 22, 2018
Micah Johnson Mar 22, 2018
Micah Johnson Mar 22, 2018
Ryan H Jan 23, 2018
Martin Styner Jan 26, 2018
Ryan H Jan 26, 2018
Martin Styner Jan 26, 2018
Ryan H Jan 26, 2018
Martin Styner Jan 26, 2018
Ryan H Jan 26, 2018
Martin Styner Jan 29, 2018
Ryan H Jan 29, 2018
Martin Styner Jan 30, 2018
Ryan H Jan 30, 2018
Martin Styner Jan 31, 2018
Ryan H Feb 2, 2018
Martin Styner Feb 19, 2018
Ryan H Feb 19, 2018
Martin Styner Feb 21, 2018
Ryan H Jan 31, 2018
Maike Kleemeyer Jan 10, 2018
Martin Styner Jan 10, 2018
Maike Kleemeyer Jan 11, 2018
Martin Styner Jan 11, 2018
Maike Kleemeyer Jan 15, 2018
Martin Styner Jan 17, 2018
Maike Kleemeyer Jan 18, 2018
Martin Styner Jan 18, 2018
Marie Drottar Jun 7, 2016
Jacek M Apr 27, 2016
Martin Styner Apr 27, 2016
Jacek M Apr 15, 2016
Martin Styner Apr 15, 2016
Micah Johnson Mar 27, 2018
Daniel Berge Apr 2, 2018
Micah Johnson Apr 2, 2018
Juan Prieto Apr 8, 2016
Jacek M Apr 13, 2016
Martin Styner Apr 13, 2016
RE: DWIConvert
Jacek M Apr 13, 2016
Martin Styner Apr 8, 2016