Glossary

The following list is intended to help you understand how tools/resources are categorized in NITRC.

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aBEAT
License > Other/Proprietary License > aBEAT
aBEAT is a 4D Adult Brain Extraction and Analysis Toolbox with graphical user interfaces to segment, label and analyze 4D adult brain MR images. Single-time-point images can also be analyzed. The software is developed by the IDEA group at the University of North Carolina at Chapel Hill, directed by Dr. Dinggang Shen (dinggang_shen@med.unc.edu). Please refer to the aBEAT tutorial for the use of the software. The licence of the software is as follows: -------------------------------------------------------------------------------------------------------------- aBEAT Software Copyright (C) 2012 IDEA Group, Biomedical Research Imaging Center, University of North Carolina at Chapel Hill. All rights reserved. Correspondence: dinggang_shen@med.unc.edu Web: www.med.unc.edu/bric/ideagroup aBEAT is a free software. Permission to use, copy and distribute the software is granted, provided that this licence appears in all copies. aBEAT is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. aBEAT CAN NOT be used for commercial purposes. aBEAT SHOULD NOT be used for medical purposes. The authors WILL NOT be responsible for using aBEAT in medical conditions. -------------------------------------------------------------------------------------------------------------- Portions of functions of the aBEAT software were implemented based on: the FSL library developed by the Analysis Group, FMRIB, Oxford, UK; the MINC package and ANLM tool developed by the McConnell Brain Imaging Centre of the Montreal Neurological Institute, McGill University; the ITK toolkit from the Kitware Inc. Related binary codes from these toolkits are included for user convenience. The copyrights of these codes are reserved by the original parties. Please refer to the corresponding licences in the folder "docs". Two 4D datasets in the folder "sample" can be used to test the software. The data were from the Controls in Alzheimer's Disease Neuroimaging Initiative (ADNI) database. The sample data are also included for user convenience. Please see the tutorial for the acknowledgement to the ADNI.
Academic Free License ("AFL")
License > Other/Proprietary License > Academic Free License ("AFL")
Academic Free License ("AFL") v. 3.0 Full version could be checked in: http://www.opensource.org/licenses/afl-3.0.php
Active Contour
Category > Software > Application > Segmentation > Active Contour
Segmentation by means of 'Active Contour' techniques.
ADNI License
License > Other/Proprietary License > ADNI License
http://adni.loni.ucla.edu/wp-content/uploads/how_to_apply/ADNI_DSP_Policy.pdf
Affine Warp
Category > Software > Application > Spatial Transformation > Warping > Affine Warp
Software application that performs image warping using 'Affine Warp' technique.
AFNI BRIK
Supported Data Format > AFNI BRIK
AFNI BRIK format: http://afni.nimh.nih.gov/afni/doc/faq/39, http://afni.nimh.nih.gov/afni/doc/faq/40
Agnosia
Diagnosis > Agnosia
Resource is related to or associated with application to Agnosia. Agnosia is a rare disorder characterized by an inability to recognize and identify objects or persons. See also http://www.ninds.nih.gov/disorders/agnosia/agnosia.htm
AIDS Dementia Complex
Diagnosis > Dementia > AIDS Dementia Complex
Resource is related to or associated with AIDS. AIDS is primarily an immune system disorder caused by the human immunodeficiency virus (HIV), but it can also affect the nervous system. See also http://www.ninds.nih.gov/disorders/aids/aids.htm MESH_UID: D015526
AIX
Operating System > POSIX/UNIX-like > AIX
AIX operating system.
Alcohol-Related Disorders
Diagnosis > Substance-Related Disorders > Alcohol-Related Disorders
Resource related or applied to Alcohol Abuse. MESH_UID: D019973
Algorithm or Reusable Library
Category > Software > Algorithm or Reusable Library
Source code, libraries, or descriptions of algorithms that may be used as part of a standalone application. Tools/resources using this category may include standalone tools using the algorithms or libraries (so having a standalone tool doesn't preclude inclusion in this category), but they should present the reusable bits in a way that makes them easy to reuse (so a package that distributes and compiles from source shouldn't necessarily claim that source to be practically reusable).
Alzheimer Disease
Diagnosis > Dementia > Alzheimer Disease
Resource is related to or associated with application to Alzheimer's Disease. Alzheimer's disease (AD) is an age-related, non-reversible brain disorder that develops over a period of years. See also http://www.ninds.nih.gov/disorders/alzheimersdisease/alzheimersdisease.htm MESH_UID: D000544
Amin
License > Other/Proprietary License > Amin
License for image registration for the brain tumor analysis.
Amyotrophic Lateral Sclerosis
Diagnosis > Amyotrophic Lateral Sclerosis
Resource is related to or associated with application to Amyotrophic lateral sclerosis (ALS). Amyotrophic lateral sclerosis (ALS), sometimes called Lou Gehrig's disease or classical motor neuron disease, is a rapidlyprogressive, invariably fatal neurological disease that attacks the nerve cells (neurons) responsible for controlling voluntary muscles. See also http://www.ninds.nih.gov/disorders/amyotrophiclateralsclerosis/ALS.htm MESH_UID: D000690
ANALYZE
Supported Data Format > ANALYZE
ANALYZE(TM) format: www.mayo.edu/bir/PDF/ANALYZE75.pdf
Analyze license
License > Other/Proprietary License > Analyze license
END-USER LICENSE AGREEMENT FOR ANALYZEDIRECT SOFTWARE Analyze 9.0 and AVW 9.0 This AnalyzeDirect end-user license agreement ("EULA") is a legal agreement between you (either an individual or a single entity) and AnalyzeDirect, for the AnalyzeDirect software product identified above, which includes computer software and may include associated media, printed materials, and "online" or electronic documentation ("software product"). The software product may also include any supplements to the original software product provided to you by AnalyzeDirect. Any software provided along with the software product that is associated with a separate end-user license agreement is licensed to you under terms of that license agreement. By installing, copying, downloading, accessing or otherwise using the software product, you agree to be bound by the terms of this EULA. If you do not agree to the terms of this EULA, do not install or use the software product. This EULA represents a sublicensing agreement granted to you by AnalyzeDirect, acting as a licensee of Mayo Foundation for Medical Education and Research ("MFMER"). MFMER is the developer and intellectual property owner of the software product. AnalyzeDirect is a licensee of MFMER, and can generate two types of sublicense for an end-user: a "node-locked license", and a "floating license". SOFTWARE PRODUCT LICENSE The software product, owned by MFMER, is protected by copyright laws, patent laws, trademark laws, international copyright treaties and other intellectual property laws and treaties. The software product is licensed, not sold. 1. GRANT OF LICENSE This EULA grants you the following rights: "Node-locked license": You may install and use a single fixed-node license copy of the software product on a single computer, including a workstation, terminal or other digital electronic device ("computer"). The computer on which the software product will be installed has been specifically identified in writing to AnalyzeDirect during the ordering process. If the software product is required to be used on other computers, additional fixed node license copies of the software product must be acquired for each other computer. "Floating license": You may install the floating license manager from a floating license copy of the software product on a single computer, including a workstation, terminal or other digital electronic device ("floating license server"), and allow other computers within your company or institution to access and run the software product. The acquisition of a single floating license copy of the software product allows only one computer to access and run the software product at one time. If the software product is required to be accessed and run on other computers on the network simultaneously, additional floating license copies of the software product must be acquired. 2. OTHER RIGHTS AND LIMITATIONS Academic user: If you have identified yourself as an academic user, you must be a qualified educational user to use the software product, and be affiliated with an accredited educational institution. If you are not a qualified educational user, you are not eligible for the academic discount for the software product. Field of use: The software product may only be used for research purposes in the field of biomedical imaging. Rental, sale and sublicense: You may not rent, lease or lend the software product. You may not sell the software product. You may not sublicense the software product. Modification: You may not modify, enhance, adapt, translate, create derivative works, reverse engineer, decompile, disassemble, or transfer the software product. Intellectual property rights: This EULA does not grant you any rights in connection with any trademarks, copyrights, patent rights or any other intellectual property rights of AnalyzeDirect or MFMER. 3. WARRANTIES Except as expressly provided herein, nothing in this EULA shall be construed as: (a) A warranty or representation by AnalyzeDirect or MFMER as to the validity or scope of any copyrights or patents contained within the software product; or (b) An obligation to bring or prosecute actions or suits against third parties for infringement; (c) Conferring by implication, estoppel, or otherwise, any copyrights or patents of AnalyzeDirect or MFMER. NOTWITHSTANDING ANY OTHER PROVISION IN THIS EULA TO THE CONTRARY, NEITHER ANALYZEDIRECT NOR MFMER HAS MADE AND MAKES NO WARRANTIES OF ANY NATURE, DIRECTLY OR INDIRECTLY, EXPRESS OR IMPLIED, REGARDING THE MERCHANTABILITY, NON-INFRINGEMENT, FITNESS FOR A PARTICULAR PURPOSE, SUITABILITY, DURABILITY, CONDITION, QUALITY OR ANY OTHER CHARACTERISTIC OF THE SOFTWARE PRODUCT. YOU AGREE TO TAKE THE SOFTWARE PRODUCT "AS IS" AND "WITH ALL FAULTS" AND HEREBY SPECIFICALLY WAIVE ALL RIGHTS TO MAKE ANY CLAIM AGAINST ANALYZEDIRECT OR MFMER FOR BREACH OF WARRANTY OF ANY KIND RELATED TO THE SOFTWARE PRODUCT. LIMITATION OF LIABILITY: TO THE MAXIMUM EXTENT PERMITTED BY APPLICABLE LAW, IN NO EVENT SHALL ANALYZEDIRECT OR MFMER BE LIABLE FOR ANY SPECIAL, INCIDENTAL, INDIRECT, CONSEQUENTIAL OR PUNITIVE DAMAGES WHATSOEVER, ARISING OUT OF THE USE OF OR INABILITY TO USE THE SOFTWARE PRODUCT OR THE FAILURE TO PROVIDE SUPPORT SERVICES, EVEN IF ANALYZEDIRECT OR MFMER HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES. IN ANY CASE, THE ENTIRE LIABILITY OF ANALYZEDIRECT AND/OR MFMER WHETHER JOINTLY OR SEVERALLY UNDER ANY PROVISION OF THIS EULA OR UNDER ANY LEGAL THEORY SHALL BE LIMITED TO THE AMOUNTS ACTUALLY PAID BY YOU FOR THE SOFTWARE PRODUCT. This EULA is governed in all respects exclusively by the laws of the state of Minnesota, U.S.A., excluding its conflicts-of-law and choice-of-law provisions. 4. ASSIGNABILITY This EULA may be assigned, with notice to you in writing, to MFMER or MFMER's designee. 5. USE FOR RESEARCH PURPOSES ONLY You may only use the software product for research purposes. The United States Food and Drug Administration 510K approval has NOT been applied for nor received for use of the software product in a clinical setting. 6. NAME USE You agree not to use the name "AnalyzeDirect" for any public promotion, advertising or press releases without AnalyzeDirect's express, prior, written consent, which consent to AnalyzeDirect may withhold in its absolute discretion. You agree not to use the name "Mayo" or "Mayo Clinic" for any public promotion, advertising or press releases without MFMER's express, prior, written consent, which consent to MFMER may withhold in its absolute discretion.
Anatomic
Category > Software > Application > Segmentation > Region of Interest > Labeling > Anatomic
Software application for the application of specific 'Anatomic' labels to regions of interest.
ANIMA Data Usage and Contributor Agreement
License > Other/Proprietary License > ANIMA Data Usage and Contributor Agreement
ANIMA Data Usage and Contributor Agreement [draft, not final] By obtaining and using contents of the ANIMA Database, you (the User or the Contributor, as applicable) agree to abide by the following terms. These constitute the license granted to the User by the ANIMA Database and its Contributors; and the license granted to the ANIMA Database by its Contributors. 1. Definitions of Capitalized Words “Database” refers to the ANIMA Database, including all Contents therein, its web interface, and its ancillary content, including documentation, tutorials, and related material. “Database Owners” refers to the copyright holders of the ANIMA Database, specifically Forschungszentrum Jülich […] “Licensor” refers collectively to the Database Owners and the Contributors to the Database “Contributor” refers to a person who contributes data to the Database, and specifically has the authority to do so. “User” refers to anyone who accesses and makes use of the Contents of the Database. “Content” refers to any data item, including metadata, contributed to the Database. “Agreement” and “License” refer to the present document, and the license described herein. Words in the singular include the plural and vice versa. 2. Rights granted to the Database Owners by the Contributor 2.1. The Contributor grants access and any non-commercial use of the contributed Content to the Database Owners and its Users, subject only to the terms in this Agreement. This license is non-exclusive, worldwide, and royalty-free. 2.2. The Contributor retains all copyright claims to the contributed data; no copyright is claimed by the Database Owners over the contributed Contents. 2.3. The Contributor grants the Database Owners the right to freely redistribute Database Content, unless this condition is expressly refused by communication to the Database Owners. Whether the right to redistribute is granted shall be clearly indicated in the Database. 3. Rights granted to Users by the Licensor 3.1. Content obtained from the Database may be freely used for any non-commercial purpose, subject to the conditions listed herein. 3.2. Redistribution of Database Contents is only permitted with written consent from the Database Owners, and only for studies whose Contributors have approved redistribution, as in Section 2.3. 4. Attribution 4.1. Any public use of Database Contents, including publication in article or web-based form, must provide attribution, specifically by reference to the Database itself, and the primary article associated with those data. The appropriate references will be specified by the Database. 5. Warranties and Disclaimer 5.1. The Database is licensed by the Licensor “as is” and without any warranty of any kind, either express, implied, or arising by statute, custom, course of dealing, or trade usage. Licensor specifically disclaims any and all implied warranties or conditions of title, non-infringement, accuracy or completeness, the presence or absence of errors, fitness for a particular purpose, merchantability, or otherwise. 6. Liability 6.1. The Licensor is not liable for, and expressly excludes, all liability for loss or damage however and whenever caused to anyone by any use under this Agreement, whether by the User or by anyone else, and whether caused by any fault on the part of the Licensor or not. This exclusion of liability includes, but is not limited to, any special, incidental, consequential, punitive, or exemplary damages such as loss of revenue, data, anticipated profits, and lost business. This exclusion applies even if the Licensor has been advised of the possibility of such damages.
Animation
Category > Software > Application > Visualization > Animation
Software application visualization using 'Animation'.
Anisotropy
Category > Software > Application > Modeling > Tensor Metric > Anisotropy
Software application that performs tensor metric analysis of 'Anisotropy'.
Annotation
Category > Software > Application > Genomic Analysis > Pathways & Networks > Annotation
Software related to the annotation, identification and expression of structural and functional annotation of genomic elements.
Anorexia Nervosa
Diagnosis > Anorexia Nervosa
Resource is related to or associated with application to Anorexia nervosa. Persons with this disorder may have an intense fear of weight gain, even when they are underweight. They may diet or exercise too much or use other ways to lose weight. The exact causes of anorexia nervosa are not known. Many factors may be involved. Genes and hormones may play a role. Social attitudes that promote very thin body types may also be involved.Family conflicts are no longer thought to contribute to this or other eating disorders.Risk factors for anorexia include: Anorexia often begins during the pre-teen or teen years or young adulthood. It is more common in females, but may also be seen in males. The disorder is seen mainly in white women who are high achievers in school and who have a goal-oriented family or personality. See also http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0001401/ MESH_UID: D000856
ANOVA
Category > Software > Application > Time Domain Analysis > ANOVA
Software application that performs a time domain analysis using 'ANOVA' techniques.
ANT
Supported Data Format > EEG Formats > ANT
ANT file format. File extension: .cnt (continous EEG) from the ANT company (www.ant-neuro.com)
Apache License 2.0
License > Apache License 2.0
The Apache License is a free software license authored by the Apache Software Foundation (ASF). The Apache License requires preservation of the copyright notice and disclaimer, but it is not a copyleft license — it allows use of the source code for the development of proprietary software as well as free and open source software. (From http://en.wikipedia.org/wiki/Apache_License) http://www.apache.org/licenses/LICENSE-2.0.html NeuroLex: birnlex_2349
Aphasia
Diagnosis > Aphasia
Resource is related to or associated with application to Aphasia. Aphasia is a neurological disorder caused by damage to the portions of the brain that are responsible for language. See also http://www.ninds.nih.gov/disorders/aphasia/aphasia.htm
AppleScript
Programming Language > AppleScript
A Mac OS X scripting language: http://developer.apple.com/library/mac/documentation/AppleScript/Conceptual/AppleScriptX/AppleScriptX.html
Application
Category > Software > Application
Software programs designed to run on a computer.
Apraxias
Diagnosis > Apraxias
Resource is related to or associated with application to Apraxia, See also http://www.ninds.nih.gov/disorders/apraxia/apraxia.htm MESH_UID: D001072
Arborization
Category > Software > Application > Neuronal Characterization > Arborization
Software application for the quantification of the neuronal properties of 'Arborization'.
Artifact Removal
Category > Software > Application > Spatial Transformation > Artifact Removal
Software application that performs image spatial transformation for the purpose of 'Artifact Removal'.
Artistic License
License > BSD/MIT-Style Open Source License > Artistic License
The Artistic License or a derivative; see: http://www.opensource.org/licenses/artistic-license.php The Artistic License is intended to allow a package to be released as open source while still giving the originator some control over the future of the package. The Artistic License is controversial and has been criticized as being "too vague"; packages are often released under a dual license where the Artistic License is used.
ASCII
Supported Data Format > ASCII
ASCII test file
ASP
Programming Language > ASP
A Microsoft dynamic scripting language, which can include VB/Jscript. ASP stands for Active Server Pages.
Asperger Syndrome
Diagnosis > Asperger Syndrome
Resource is related to or associated with application to Asperger Syndrome. Asperger syndrome (AS) is a developmental disorder. See also http://www.ninds.nih.gov/disorders/asperger/asperger.htm
Ataxia
Diagnosis > Ataxia
Resource is related to or associated with application to Ataxia. Ataxia often occurs when parts of the nervous system that control movement are damaged. See also http://www.ninds.nih.gov/disorders/ataxia/ataxia.htm MESH_UID: D001259
Atlas Application
Category > Software > Application > Atlas Application
Software application for generation, display or manipulation of a spatial 'atlas'.
Atlas Data
Category > Information Resource > Data Resource > Atlas Data
A resource that provides a type of anatomical data set containing a collection of spatially indexed anatomical maps. NeuroLexID: nlx_res_20090402
ATR_DNI_NEUROSHARE
License > Other/Proprietary License > ATR_DNI_NEUROSHARE
Our tools are free but copyrighted software, distributed under the terms of the GNU General Public Licence as published by the Free Software Foundation. Further details on “copyleft” can be found at http://www.gnu.org/copyleft/. No formal support or maintenance is provided or implied.
Attention Deficit Disorder with Hyperactivity
Diagnosis > Attention Deficit Disorder with Hyperactivity
Resource is related to or associated with application to Attention Deficit-Hyperactivity Disorder. Attention deficit-hyperactivity disorder (ADHD) is a neurobehavioral disorder that affects 3-5 percent of all American children. See also http://www.ninds.nih.gov/disorders/adhd/adhd.htm MESH_UID: D001289
Attribution
License > Creative Commons License > Attribution
From http://creativecommons.org/about/licenses/: This license lets others distribute, remix, tweak, and build upon your work, even commercially, as long as they credit you for the original creation. This is the most accommodating of licenses offered, in terms of what others can do with your works licensed under Attribution.
Attribution No Derivatives
License > Creative Commons License > Attribution No Derivatives
From http://creativecommons.org/about/licenses/: This license allows for redistribution, commercial and non-commercial, as long as it is passed along unchanged and in whole, with credit to you.
Attribution Non-Commercial
License > Creative Commons License > Attribution Non-Commercial
From http://creativecommons.org/about/licenses/: This license lets others remix, tweak, and build upon your work non-commercially, and although their new works must also acknowledge you and be non-commercial, they don’t have to license their derivative works on the same terms.
Attribution Non-Commercial No Derivatives
License > Creative Commons License > Attribution Non-Commercial No Derivatives
From http://creativecommons.org/about/licenses/: This license is the most restrictive of our six main licenses, allowing redistribution. This license is often called the “free advertising” license because it allows others to download your works and share them with others as long as they mention you and link back to you, but they can’t change them in any way or use them commercially.
Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)
License > Other/Proprietary License > Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0) License. To view a copy of the license (which exceeds the 8000 character limit), please visit http://creativecommons.org/licenses/by-nc-nd/4.0/
Attribution-NonCommercial-NoDerivs CC BY-NC-ND
License > Other/Proprietary License > Attribution-NonCommercial-NoDerivs CC BY-NC-ND
This Creative Commons license is described here (http://creativecommons.org/licenses/by-nc-nd/4.0/) This license was recommended by the University's legal counsel. It restricts users from sharing modified versions of the code, which gives us greater control over the evolution of the code.
Attribution Non-Commercial Share Alike
License > Creative Commons License > Attribution Non-Commercial Share Alike
From http://creativecommons.org/about/licenses/: This license lets others remix, tweak, and build upon your work non-commercially, as long as they credit you and license their new creations under the identical terms. Others can download and redistribute your work just like the by-nc-nd license, but they can also translate, make remixes, and produce new stories based on your work. All new work based on yours will carry the same license, so any derivatives will also be non-commercial in nature.
Attribution Share Alike
License > Creative Commons License > Attribution Share Alike
From http://creativecommons.org/about/licenses/: This license lets others remix, tweak, and build upon your work even for commercial reasons, as long as they credit you and license their new creations under the identical terms. This license is often compared to open source software licenses. All new works based on yours will carry the same license, so any derivatives will also allow commercial use.
Autistic Disorder
Diagnosis > Autistic Disorder
Resource is related to or associated with application to Autism. Autistic disorder (sometimes called autism or classical ASD) is the most common condition in a group of developmental disorders known as the autism spectrum disorders (ASDs). See also http://www.ninds.nih.gov/disorders/autism/autism.htm MESH_UID: D001321
Autocorrelation
Category > Software > Application > Time Domain Analysis > Correlation > Autocorrelation
Software application that performs time domain analysis using 'Autocorrelation' technique.
Available by Purchase Only
License > Available by Purchase Only
Available to all users by purchase only.
Back Projection
Category > Software > Application > Image Reconstruction > Tomography > Back Projection
Software application for the reconstruction of tomographic images using 'Back Projection' techniques.
Back Projection has two sub-entries: Filtered and Unfiltered.
Band Pass
Category > Software > Application > Spatial Transformation > Frequency Domain > Filtering > Band Pass
Software application that performs image spatial transformation using the frequency domain technique of 'Band Pass' filtering.
Bell Palsy
Diagnosis > Bell Palsy
Resource is related to or associated with application to Bell's palsy. Damage to this nerve causes weakness or paralysis of these muscles. Paralysis means that you cannot use the muscles at all. Bell's palsy affects about 30,000 - 40,000 people a year in the United States.Bell's palsy involves damage to the seventh cranial (facial) nerve. This nerve controls the movement of the muscles of the face.Bell's palsy is thought to be due to swelling (inflammation) of this nerve in the area where it travels through the bones of the skull.The cause is often not clear. A type of herpes infection called herpes zoster might be involved. See also http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0001777/ MESH_UID: D020330
BIAS License
License > Other/Proprietary License > BIAS License
The atlases are distributed free for non-commercial research purposes, but ownership, copyright, and all rights are retained by BIAS lab, Department of Biostatistics and BRIC, UNC-Chapel Hill.
Bibliographic Resource
Category > Information Resource > Bibliographic Resource
A resource that deals with bibliographic information. Bibliographic information is any information that is expressed in textual format. NeuroLexID: birnlex_11038
Bibliographic Resource has two sub-entries: Books and Journal.
BIC-MNI Louis Collins
License > Other/Proprietary License > BIC-MNI Louis Collins
Copyright (C) 1993–2004 Louis Collins, McConnell Brain Imaging Centre, Montreal Neurological Institute, McGill University. Permission to use, copy, modify, and distribute this software and its documentation for any purpose and without fee is hereby granted, provided that the above copyright notice appear in all copies. The authors and McGill University make no representations about the suitability of this software for any purpose. It is provided “as is” without express or implied warranty. The authors are not responsible for any data loss, equipment damage, property loss, or injury to subjects or patients resulting from the use or misuse of this software package.
BioMed Central Ltd
License > Other/Proprietary License > BioMed Central Ltd
This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
Bipolar Disorder
Diagnosis > Bipolar Disorder
Resource is related to or associated with application to Bipolar Disorder. http://www.ncbi.nlm.nih.gov/mesh/68001714 MESH_UID: D001714
BIRN Data License
License > Data License > BIRN Data License
BIRN Data Repository Data Use Agreement (From http://nbirn.net/bdr/Data_Use_Agreement_09_19_07-1.pdf) This document outlines the provisions of a non-exclusive license for use of data shared through the Biomedical Informatics Research Network (BIRN) Data Repository (BDR). In line with one of the unique aspects of BIRN, the goal of the BDR is to make data originally acquired with investigator-specific interest available to the community for further study. All data are freely available to the public with the provision of an active e-mail address and acceptance of this standard BDR Data Use Agreement. All Users are encouraged to consider sharing resultant data through the BDR to extend and strengthen this collaborative environment. By your acceptance of these terms, you agree to the following provisions for yourself and any collaborators with whom you share these data: 1. Security: I will make no attempt to determine the identity of any individual whose data are included in the BDR. 2. Data Guarantee: I will employ these data at my own risk, as the quality of these data cannot be guaranteed. 3. Publication / Acknowledgement of Data Use: I will acknowledge the use of BDR data when publicly presenting any findings or algorithms that benefited from their use. Such presentations include but are not limited to papers, books, book chapters, conference posters, and talks. a) I agree to acknowledge the BIRN Data Repository and funding mechanisms along with the relevant project-specific accession number(s) associated with data downloaded from the BDR. For example: Methods Section: “These data were downloaded from the BIRN Data Repository, Project Accession Number 2007-BDR-6UHZ1.” Acknowledgements: “Data used for this study were downloaded from the Biomedical Informatics Research Network (BIRN) Data Repository (http://www.nbirn.net/bdr), supported by grants to the BIRN Coordinating Center (U24-RR019701), Function BIRN (U24-RR021992), Morphometry BIRN (U24-RR021382), and Mouse BIRN (U24-RR021760) Testbeds funded by the National Center for Research Resources at the National Institutes of Health, U.S.A.” b) I agree to provide to BIRN a bibliographic citation of the final published presentation or article for inclusion in the BIRN literature archive. I will send this information to BDR_info@nbirn.net. 4. Redistribution of Data: a) Redistribution of original BDR data is permitted so long as the data are redistributed under the same terms and conditions as described in this Data Use Agreement. b) Data derived from original BDR data may be distributed under terms and conditions established by the creators of such derived data. Users must comply with the terms and conditions of use set by the creators of these derived data.
BIRN License
License > Other/Proprietary License > BIRN License
BIRN License Version 1.0, October 2005 This license is between the user (you) and the copyright holders. The license granted in this Agreement includes without limitation the right to (i) incorporate the software into other proprietary programs (subject to any restrictions applicable to such programs), (ii) add your own copyright statement to your modifications of the software, and (iii) provide additional or different license terms and conditions in your sublicenses of modifications of the software; provided that your use, reproduction and distribution of such modifications otherwise complies with the conditions stated in this Agreement. 1. Redistribution and use, with or without modification, must retain the author’s(s’) copyright notice(s) as documented in the source code. Redistributions in binary code must reproduce the author’s(s’) copyright notice(s) as documented in the source code. This list of conditions, the disclaimer in the documentation and/or other materials provided with the distribution must also be retained or reproduced. 2. None of the names, logos, or trademarks of BIRN, any Licensor or any of Licensor's affiliates or any of the Contributors may be used to endorse or promote products produced in whole or in part by operation of the software or derived from or based on the software without specific prior written permission from the applicable party. 3. The acknowledgment “This product includes [Insert name of Software]” shall apply to all copies of complete or substantial portions of the software, including without limitation all source and executable forms, and on any user documentation. 4. The software has been designed for research purposes only and has not been approved for clinical use. It has not been reviewed or approved by the Food and Drug Administration or by any other agency. You acknowledge and agree that clinical applications are neither recommended nor advised. 5. You are responsible for purchasing any external software that may be required for the proper running of this software. You also agree that you are solely responsible for informing your sublicensees, including without limitation your end-users, of their obligations to secure any such required permissions. You further agree that you are solely responsible for determining and divulging the viral nature of any code included in the software. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESSED OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE, AND NON-INFRINGEMENT, ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNERS OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. Any use, reproduction or distribution of the Software which is not in accordance with this Agreement shall automatically revoke all rights granted to you under this Agreement and render this Agreement null and void. This Agreement does not grant any rights in or to any intellectual property owned by Licensor or any Contributor except those rights expressly granted hereunder.
Books
Category > Information Resource > Bibliographic Resource > Books
Books that are relevant to functional and structural neuroimaging.
Brain Concussion
Diagnosis > Brain Concussion
Resource is related to or associated with application to Concussion. It can affect how the brain works for a while. A concussion can lead to a bad headache, changes in alertness, or loss of consciousness. A concussion can result from a fall, sports activities, or car accidents. A big movement of the brain (called jarring) in any direction can cause a person to lose alertness (become unconscious). How long the person stays unconscious may be a sign of the severity of the concussion.Concussions do not always result in loss of consciousness. Most people who have a concussion never pass out. But they may describe seeing all white, black, or stars. A person can also have a concussion and not realize it. See also http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0001802/ MESH_UID: D001924
Brain Injuries
Diagnosis > Brain Injuries
Resource is related to or associated with application to Traumatic Brain Injury. Traumatic brain injury (TBI), a form of acquired brain injury, occurs when a sudden trauma causes damage to the brain. See also http://www.ninds.nih.gov/disorders/tbi/tbi.htm MESH_UID: D001930
BrainMagix SPM Viewer: License & Disclaimer
License > Other/Proprietary License > BrainMagix SPM Viewer: License & Disclaimer
This Agreement covers downloads and use of « BrainMagix SPM Viewer » ("Software") developed and distributed by Imagilys SPRL, with its headquarters at 60 Lietart Street, 1150 Brussels, Belgium, VAT BE 0875.423.416 ("Imagilys"). As used in this Software License, "you" means the individual downloading and/or using the Software and the institution or entity which employs or is otherwise affiliated with such individual in connection therewith. Imagilys hereby grants you a free, non-exclusive license to use the Software, provided that you accept and adhere to all of the terms and conditions of this Software License. Downloading or use of the Software constitutes acceptance of all of the terms and conditions of this Agreement. If you do not agree to such terms and conditions, you have no right to download or use the Software. The Software has been designed for research purposes only and has not been reviewed or approved by the FDA, CE or by any other agency. YOU ACKNOWLEDGE AND AGREE THAT CLINICAL APPLICATIONS ARE STRICTLY PROHIBITED. The Software is provided "AS IS" and neither Imagilys nor any contributor to the software (each a "Contributor") shall have any obligation to provide maintenance, support, updates, enhancements or modifications thereto. IMAGILYS AND ALL CONTRIBUTORS SPECIFICALLY DISCLAIM ALL EXPRESS AND IMPLIED WARRANTIES OF ANY KIND INCLUDING, BUT NOT LIMITED TO, ANY WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL IMAGILYS OR ANY CONTRIBUTOR BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT, SPECIAL, INCIDENTAL, EXEMPLARY OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY ARISING IN ANY WAY RELATED TO THE SOFTWARE, EVEN IF IMAGILYS OR ANY CONTRIBUTOR HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES. TO THE MAXIMUM EXTENT NOT PROHIBITED BY LAW OR REGULATION, YOU FURTHER ASSUME ALL LIABILITY FOR YOUR USE OF THE SOFTWARE AND AGREE TO INDEMNIFY AND HOLD HARMLESS IMAGILYS AND ALL CONTRIBUTORS FROM AND AGAINST ANY AND ALL CLAIMS, SUITS, ACTIONS, DEMANDS AND JUDGMENTS ARISING THEREFROM. The software is protected by Imagilys's copyright. This Software License does not grant any rights in or to any intellectual property owned by Imagilys or any Contributor except those rights expressly granted hereabove. You can't distribute the software, but you can link to http://www.imagilys.com/brainmagix-spm-viewer/ . Third-party contributions to the Software are acknowledged in file credit.html and inherit their original license. If you use the Software in a project leading to a publication, you must quote it as « BrainMagix SPM Viewer (Imagilys, Brussels, Belgium) ». This Agreement shall be governed by and construed in accordance with the laws of Belgium without regard to principles of conflicts of law. This Agreement shall supersede and replace any other agreement relative to the Software. version 1.0 – 25/03/2013
BrainMap License
License > Other/Proprietary License > BrainMap License
From brainmap.org: By using this software, you are accepting and agreeing to our copyright policy and terms of use: BrainMap is a registered trademark of the University of Texas. All software and curated data contained in, or used by, the BrainMap database are copyrighted by the University of Texas. BrainMap software and data are available for use, free of charge, for educational and scientific, non-commercial purposes. The BrainMap coding scheme and its taxonomy of experimental design are available for use without restriction. If BrainMap's data, software, or coding strategies are used in scientific publications, we request that one or more relevant publications of the development team be cited, as described above. The BrainMap development team welcomes collaborations. We will provide guidance and assistance in the execution of meta-analyses upon request. We encourage collaborations that develop new tools for meta-analysis or use BrainMap data to develop or validate other neuroinformatics tools and strategies. We do allow other databases and image-analysis environments to query BrainMap's data, but only with prior permission and as a joint development effort. BrainMap data may not be extracted for inclusion in other databases or redistributed in any manner without prior written permission. This software is provided, as is, for non-commercial educational purposes only. Use or incorporation of this software, images, database, database-data or derivative of the data in commercial applications, scientific and commercial publications, requires a written consent from RIC-UTHSCSA. RIC-UTHSCSA MAKES NO REPRESENTATIONS OR WARRANTIES ABOUT THE SUITABILITY OF THE SOFTWARE, EITHER EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NON-INFRINGEMENT, OR CONFORMANCE TO A SPECIFICATION OR STANDARD. RIC-UTHSCSA SHALL NOT BE LIABLE FOR ANY DAMAGES SUFFERED BY LICENSEE AS A RESULT OF USING OR MODIFYING THIS SOFTWARE OR ITS DERIVATIVES.
BrainMaps.org License
License > Other/Proprietary License > BrainMaps.org License
All content on BrainMaps.org, unless otherwise noted, is copyright UC Regents Davis campus, 2005-2007. All rights reserved. You are free to use any content on this site for personal or academic use, or for research purposes. The source of the content must be clearly indicated as BrainMaps.org. If commercial interests are involved, you must contact the University of California, Davis, Technology Transfer Services at copyright-at-ucdavis.edu to request a license. The exceptions to this are screenshots, which are released under the Creative Commons Attribution 3.0 License, and which permits modifications and commercial use, with attribution to brainmaps.org. This only applies to screenshots.
Brainnetome Atlas
License > Other/Proprietary License > Brainnetome Atlas
The information, images and data on this website are the property of the Brainetome Center. Our center is willing to make this information available to researchers, scientists and others at colleges, universities, not-for-profit foundations and other similar institutions free of charge, subject to proper attribution and an agreement to share alike, for use for non-commercial purposes. Brainetome Center will consider granting a license to individuals and entities that wish to use the information, images and data for commercial purposes. Such requests should be made to Dr. Lingzhong Fan by e-mail:brainnetome.atlas@nlpr.ia.ac.cn
BrainNetworkConstructionAnalysisPlatform
License > Other/Proprietary License > BrainNetworkConstructionAnalysisPlatform
You will have to agree the following terms, before downloading/using/running/editing/changing any portion of codes in this package. 1. This package is free for non-profit research, but needs a special license for any commercial purpose. Please contact Limin Niu for details. 2. You agree to appropriately cite this work in your related studies and publications.
BRAINS License
License > Other/Proprietary License > BRAINS License
Available to research community, but requires recognition of the main software developers on all first publications of results.
BrainSuite Software License, Version 2.0
License > Other/Proprietary License > BrainSuite Software License, Version 2.0
BrainSuite Software License, Version 2.0 The following terms apply to all files associated with the software unless explicitly disclaimed in individual files. 1. Permission is granted to use this software without charge for non-commercial research purposes only. You may make verbatim copies of this software for personal use, or for use within your organization, provided that you include copies of all of the original copyright notices and associated disclaimers with each copy of the software. 2. YOU MAY NOT DISTRIBUTE COPIES of this software, or copies of software derived from this software, to others outside your organization. 3. This software is for research purposes only and has not been approved for clinical use. 4. If you publish results whose generation used this software, you must provide attribution to the authors of the software by referencing the appropriate papers, as outlined on the BrainSuite website (http://brainsuite.org/attribution). 5. IN NO EVENT SHALL THE UNIVERSITY OF CALIFORNIA, THE UNIVERSITY OF SOUTHERN CALIFORNIA, THE AUTHORS, OR THE DISTRIBUTORS BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT, SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS, ARISING OUT OF THE USE OF THIS SOFTWARE, ITS DOCUMENTATION, OR ANY DERIVATIVES THEREOF, EVEN IF THE AUTHORS HAVE BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. 6. THE UNIVERSITY OF CALIFORNIA, THE UNIVERSITY OF SOUTHERN CALIFORNIA, THE AUTHORS, AND THE DISTRIBUTORS SPECIFICALLY DISCLAIM ANY WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, AND NON-INFRINGEMENT. THIS SOFTWARE IS PROVIDED ON AN “AS IS” BASIS, AND THE AUTHORS AND DISTRIBUTORS HAVE NO OBLIGATION TO PROVIDE MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS, OR MODIFICATIONS.
Brain Vision Analyzer Data Exchange Format
Supported Data Format > EEG Formats > Brain Vision Analyzer Data Exchange Format
Brain Vision Analyzer (Brain Vision Exchange format - text based). File extension (3 files): .vhdr (header), .dat (data), .vmrk (events)
Brede Toolbox License
License > Other/Proprietary License > Brede Toolbox License
The Brede Toolbox License allows research-based and non-commercial use.
BSD
Operating System > POSIX/UNIX-like > BSD
Any variant of BSD. Use this category if the program does not require a particular BSD flavor.
BSD has the following sub-entries: BSD/OS, FreeBSD, NetBSD, and OpenBSD.
BSD License
License > BSD/MIT-Style Open Source License > BSD License
BSD or BSD-style license: http://www.opensource.org/licenses/bsd-license.php The BSD license is fairly permissive, placing few restrictions on the developer or user. As a developer, you may distribute source or binaries (with or without source code). As a tool user, you may modify and redistribute this tool or resource. If source code is distributed, a user may browse the source code to understand the tool's workings, modify the tool to better suit local needs, and share a modified version. If source code is not distributed, a user may still redistribute the tool as part of another package. NeuroLex: birnlex_2350
BSD License, GNU Lesser General Public License and GNU General Public License, v
License > Other/Proprietary License > BSD License, GNU Lesser General Public License and GNU General Public License, v
ROBEX makes use of these 3 licenses: - BSD License - GNU Lesser General Public License - GNU General Public License, v2
BSD/MIT-Style Open Source License
License > BSD/MIT-Style Open Source License
Free use in commercial and non-commercial settings.
BSD/MIT-Style Open Source License has the following sub-entries: Artistic License, BSD License, and MIT/X Consortium License.
BSD/OS
Operating System > POSIX/UNIX-like > BSD > BSD/OS
BSD/OS operating system.
bshort/bfloat
Supported Data Format > bshort/bfloat
MGH-NMR bshort and bfloat: http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/BshortFormat and http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/BfloatFormat
BSMART
License > Other/Proprietary License > BSMART
BSMART is a Matlab/C Toolbox for analysis of multichannel neural time series. BSMART, an acronym of Brain-System for Multivariate AutoRegressive Timeseries, is an open-source software package for analyzing brain circuits. The package provides users with analytic tools to characterize, with high spatial, temporal, and frequency resolution, functional relations within large multi-channel neural data sets. A unique feature of the BSMART package is Granger causality that can be used to assess causal influences and directions of driving among multiple neural signals. BSMART may be downloaded for free at http://www.brain-smart.org/. Citation is required for any scientific articles that result.
Bulimia
Diagnosis > Bulimia
Resource is related to or associated with application to Bulimia. Many (but not all) people with bulimia also have anorexia nervosa. Many more women than men have bulimia. The disorder is most common in adolescent girls and young women. The affected person is usually aware that her eating pattern is abnormal and may feel fear or guilt with the binge-purge episodes.The exact cause of bulimia is unknown. Genetic, psychological, trauma, family, society, or cultural factors may play a role. Bulimia is likely due to more than one factor. See also http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0001381/ MESH_UID: D002032
C
Programming Language > C
A procedural computer programming language.
C#
Programming Language > C#
Microsoft's next generation C++ Language: http://msdn2.microsoft.com/en-us/vcsharp/aa336809.aspx
C++
Programming Language > C++
An object-oriented computer programming (OOP) language.
Cardware
License > Other/Proprietary License > Cardware
MisterI is NOT a FreeWare but a CARDWARE. If you enjoy the software, you shall send me a nice postcard of the place where you live. Please do it! It's a very nice way to reward for the work done.
Category
Subject area of the tool or resource.
Category has the following sub-entries: Funding Resource, Hardware, Information Resource, Other, and Software.
CeCill v2
License > Other/Proprietary License > CeCill v2
A complete description of the license can be found here: http://cecill.info/licences.en.html The purpose of this Free Software license agreement is to grant users the right to modify and redistribute the software governed by this license within the framework of an open source distribution model. The exercising of these rights is conditional upon certain obligations for users so as to preserve this status for all subsequent redistributions. In consideration of access to the source code and the rights to copy, modify and redistribute granted by the license, users are provided only with a limited warranty and the software's author, the holder of the economic rights, and the successive licensors only have limited liability. In this respect, the risks associated with loading, using, modifying and/or developing or reproducing the software by the user are brought to the user's attention, given its Free Software status, which may make it complicated to use, with the result that its use is reserved for developers and experienced professionals having in-depth computer knowledge. Users are therefore encouraged to load and test the suitability of the software as regards their requirements in conditions enabling the security of their systems and/or data to be ensured and, more generally, to use and operate it in the same conditions of security. This Agreement may be freely reproduced and published, provided it is not altered, and that no provisions are either added or removed herefrom.
Center of Mass
Category > Software > Application > Quantification > Volumetric Analysis > Center of Mass
Software application for the quantification of the volumetric property of 'Center of Mass'.
Cerebellar White Matter Atlas
License > Other/Proprietary License > Cerebellar White Matter Atlas
The Cerebellar White Matter Atlas is based on probabilistic tractography of high resolution, high quality diffusion MR data of 90 healthy subjects from the Human Connectome Project database. The atlas comes as a 3D probabilistic map, as well as binary parcellations at different probability thresholds. MNI - as well as SUIT (Spatially Unbiased Infratentorial Template) - compatible versions of the atlas are provided.
cff (Connectome File Format)
Supported Data Format > cff (Connectome File Format)
Connectome File Format. See also http://www.nitrc.org/projects/cff or http://www.connectomics.org/cfflib/
Child Development Disorders, Pervasive
Diagnosis > Child Development Disorders, Pervasive
Resource is related to or associated with application to Pervasive Developmental Disorders. The diagnostic category of pervasive developmental disorders (PDD) refers to a group of disorders characterized by delaysin the development of socialization and communication skills. http://www.ninds.nih.gov/disorders/pdd/pdd.htm MESH_UID: D002659
CIFTI
Supported Data Format > CIFTI
CIFTI Connectivity File Format. See also http://www.nitrc.org/projects/cifti
CIGAL License
License > Other/Proprietary License > CIGAL License
CIGAL, copyright James T. Voyvodic 1994 (the “Software”) The Software remains the property of James Voyvodic and Duke University (the “Owners”). The Software is distributed "AS IS" under this Licence solely for non-commercial use in the hope that it will be useful, but this license makes clear that no condition is made or to be implied, nor is any warranty given or to be implied, as to the accuracy of the Software, or that it will be suitable for any particular purpose or for use under any specific conditions. Furthermore, the Owners disclaim all responsibility for the use which is made of the Software. They further disclaim any liability for the outcomes arising from using the Software. The Licensee agrees to indemnify the Owners and hold the Owners harmless from and against any and all claims, damages and liabilities asserted by third parties (including claims for negligence) which arise directly or indirectly from the use of the Software or the sale of any products based on the Software. No part of the Software may be reproduced, modified, transmitted or transferred in any form or by any means, electronic or mechanical, without the express permission of the Owners. The permission of the Owners is not required if the said reproduction, modification, transmission or transference is done without financial return, the conditions of this Licence are imposed upon the receiver of the product, and all original and amended source code is included in any transmitted product. You may be held legally responsible for any copyright infringement that is caused or encouraged by your failure to abide by these terms and conditions. You are not permitted under this Licence to use this Software commercially. Use for which any financial return is received shall be defined as commercial use, and includes (1) integration of all or part of the source code or the Software into a product for sale or license by or on behalf of Licensee to third parties or (2) use of the Software or any derivative of it for research with the final aim of developing software products for sale or license to a third party or (3) use of the Software or any derivative of it for research with the final aim of developing non-software products for sale or license to a third party, or (4) use of the Software to provide any service to an external organisation for which payment is received.
Clinical Neuroinformatics
Domain > Clinical Neuroinformatics
Resource that covers the domain of clinical neuroinformatics.
Clipping
Category > Software > Application > Visualization > Image Display > Clipping
Software application visualization of images using 'Clipping'.
CNT
Supported Data Format > EEG Formats > CNT
Neuroscan 16- or 32-bit binary data format. For details, see www.neuroscan.com
Cocaine-Related Disorders
Diagnosis > Substance-Related Disorders > Cocaine-Related Disorders
Resource related to cocaine abuse. MESH_UID: D019970
COINS
License > Other/Proprietary License > COINS
Data sharing agreement
COINS Data Use Agreement
License > Data License > COINS Data Use Agreement
The MCIC imaging and clinical data are available through the COINS database and may be freely used with no restrictions. Users are encouraged to cite Gollub RL, et al, Neuroinformatics 2013 and the data sharing web site (http://coins.mrn.org/dataexchange). The user will be required to accept the conditions of the MCIC Data Use Agreement before accessing the data.
Cold Fusion
Programming Language > Cold Fusion
Cold Fusion Programming Language.
Colocalization
Category > Software > Application > Spatial Transformation > Colocalization
Software application that performs image spatial transformation for the purpose of 'Colocalization'.
Columbia University Non-Commercial Software License Agreement
License > Other/Proprietary License > Columbia University Non-Commercial Software License Agreement
The Columbia University Non-Commercial Software License Agreement is a nonexclusive license to use the software and documentation free of charge for internal, non commercial research or academic purposes.
Comercial Licence: Rogue Research Inc.
License > Other/Proprietary License > Comercial Licence: Rogue Research Inc.
Comercial product for sale
Comercial License: EPILEPSIAE Database
License > Other/Proprietary License > Comercial License: EPILEPSIAE Database
To packages are offered for research purposes: Package 1 with 30 surface datasets (3000 EUR for a 3-year research licence). Package 2 with 30 invasive datasets (3000 EUR for a 3-year research licence).
Commercial: Advantis Medical Imaging
License > Other/Proprietary License > Commercial: Advantis Medical Imaging
Commercial: Advantis Medical Imaging see https://advantis.io/
Commercial License
License > Other/Proprietary License > Commercial License
Commercial products for sale.
Commercial License: ASA Software
License > Other/Proprietary License > Commercial License: ASA Software
End User License Agreement and Limited Warranty for the ASA Software Please read this document carefully before signing This document contains the A.N.T. BV end user license agreement and contains warranty and liability disclaimers. By signing or opening the sealed disk package, You are confirming Your acceptance of the Software and agreeing to become bound to the terms of this Agreement. If You do not wish to do so, do not sign this document and do not open the disk package, return the entire package (including written materials) within ten (10) days to the place where You obtained it for a full refund. License: A.N.T. BV grants You and Your purchase, subject to the following terms and conditions including the payment of all license fees, a non-exclusive, nontransferable right to use the accompanying copy of the Software and related documentation on a single computer. If You purchased additional copies of the Software, A.N.T. BV also grants You a non-exclusive, nontransferable right to use these copies on additional computers, according to the number of copies of the Software You obtained. You are allowed to make one copy of the Software in machine readable form solely for back-up purposes. You must reproduce on any such copy all copyright notices and other proprietary legends of the original copy of the Software. This Agreement does not constitute a transfer of any intellectual property right. You are not allowed to modify, adapt, translate, disassemble, reverse engineer, rent out or lease the Software, including its documentation, or have such work carried out by third parties. You shall not create or attempt to create or permit others to create or attempt to create by decompilation or otherwise, the source code or any part thereof from the object code or from other information made available under this Agreement or otherwise. Limited Warranty: A.N.T. BV warrants that, for a period of twelve (12) months from the date of purchase (as evidenced by a signed copy of this document) the Software, if operated as directed, will perform substantially in accordance with the specifications identified in the documentation and that the media on which the Software is furnished will be free from defects in materials and workmanship under normal use. A.N.T. BV does not warrant, however, that Your use of the Software will be uninterrupted or that the operation of the Software will be error-free. If the license fees are not received by A.N.T. BV within the payment term, the Software may stop operating automatically. Except as set forth in the foregoing limited warranty, A.N.T. BV disclaims all other warranties or conditions, either expressed or implied, including the warranties or conditions of merchantability, fitness for particular purpose and non-infringement. If applicable law implies any except as set forth in the foregoing limited warranty, A.N.T. BV disclaims all other warranties or conditions, either expressed or implied, including the warranties or conditions of merchantability, fitness for particular purpose and non-infringement. If applicable law implies any warranties or conditions with respect to the Software, all such warranties or conditions are limited in duration to twelve (12) months from the date of purchase. The Software is not fault-tolerant and is not designed for use or resale as on-line control equipment in hazardous environments, such as medical environments requiring fail-save performance in which the failure of the Software could lead to death or personal injury (high risk activities). A.N.T. BV specifically disclaims any express or implied warranty of fitness for high-risk activities. This warranty gives You specific legal rights and You may have other legal rights that vary from state to state by jurisdiction. Exclusive remedy: A.N.T. BV’s liability for any breach shall be at A.N.T. BV’s sole discretion, (i) to repair or replace the defective media free of charge or (ii) to accept the return of the Software, including the documentation and refund the purchase price therefore. Any repaired or replaced Software will be warranted for a period of twelve (12) months from the date of purchase. Only if You inform A.N.T. BV of Your problem with the Software during the applicable warranty period and provide evidence of the date You acquired the Software will A.N.T. BV be obliged to honor this warranty. A.N.T. BV shall not be obliged to correct deviations from the specifications identified in the documentation which in A.N.T. BV’s sole opinion are not substantial or are already corrected in previous releases, updates or versions which have not been accepted by You. The above warranty shall not apply if (i) You have not applied all corrections to the Software provided by A.N.T. BV to You, (ii) You have materially and improperly or incorrectly used or operated the Software, (iii) the problem is caused by defects in the hardware or in the computer programs not delivered by A.N.T Software BV. Limitation of Liability: A.N.T. BV shall in no event be liable for any indirect, special, incidental, or consequential damages or loss of business, loss of profits, or the like, whether based on breach of contract, tort (including negligence), product liability or otherwise, or for any other damages in excess of A.N.T. BV’s list prices for the Software, even if A.N.T. BV or its representatives have been advised of the possibility of such damages, or for any claim of any other party. If the liability provisions contained in this article 4 is held illegal or unenforceable pursuant to any court decision or judgment which is not subject to appeal, the liability of A.N.T. BV to You for loss or damage, whether in contract, tort, or otherwise, arising out of or in connection with its performance or its total or partial failure to perform in accordance with the term of this Agreement in respect of any incident or series of incident attributable to the same cause, shall be limited to and shall not exceed the amount actually paid for the Software. Term: This Agreement shall commence on the date hereof and will remain in force for a period of one (1) year unless breached by You. If a prolongation of the software maintenance and service by A.N.T. BV is desired, this will be agreed upon in a separate service contract. General: If any provision or part of any provision of this Agreement shall be invalid or unenforceable, such invalidity or unenforceability shall not in any way affect the remaining parts of such provision or the remaining provisions of this Agreement. This Agreement shall be binding upon and inure to the benefit of the parties hereto and their permitted successors or assigns. This Agreement and Your respective benefits and obligations embodied herein shall be assignable by You only with A.N.T. BV’s prior written consent. This Agreement sets forth the entire understanding between You and A.N.T. BV and supersedes any and all prior Agreements, arrangements or understanding related to the subject matter hereof, and shall only be amended or modified by a written Agreement executed by You and A.N.T. BV this Agreement is governed by the laws of The Netherlands, without reference to its conflict of law provisions.
Commercial license from Brain Innovation B.V., Maastricht, The Netherlands
License > Other/Proprietary License > Commercial license from Brain Innovation B.V., Maastricht, The Netherlands
BrainVoyager QX is a commercially available cross-platform neuroimaging tool for research and academic use, which is used in hundreds of labs across the planet. All BrainVoyager products include one year of free upgrades and technical support. All new versions of BrainVoyager released during the support/upgrade period are available to customers free of charge. E-mail and phone based help service for BrainVoyager-related problems is provided by our highly qualified support team. If you are interested in purchasing BrainVoyager, please contact Mrs. Bianca Hertog-Vromen or Mrs. Claudia Goebel via sales-at-brainvoyager.com. Prices, information about additional years of upgrades and support service can be found at: http://www.brainvoyager.com/products/purchase.html.
Commercial License: Hitachi
License > Other/Proprietary License > Commercial License: Hitachi
Commercial product for sale.
Commercial License: MAG
License > Other/Proprietary License > Commercial License: MAG
These are commercial products for sale.
Commercial License: OEI
License > Other/Proprietary License > Commercial License: OEI
Commercial products for sale.
Commercial License: VPixx
License > Other/Proprietary License > Commercial License: VPixx
Commercial product for sale
Commercial: NordicNeuroLab
License > Other/Proprietary License > Commercial: NordicNeuroLab
Commercial: NordicNeuroLab see http://www.nordicneurolab.com
Commerical License:NIRx
License > Other/Proprietary License > Commerical License:NIRx
Commercial hardware for sale.
Commerical Software
License > Other/Proprietary License > Commerical Software
iView X, Experiment Center, and BeGaze2 are commercial software products offered for sale under SMI terms and conditions.
Community
Category > Information Resource > Knowledge Environment > Community
A KE that represents community involvement and participation to express and exchange ideas regarding a specific topic.
Computational Neuroscience
Domain > Computational Neuroscience
Resource that covers the domain of computational neuroscience. From Wikipedia (http://en.wikipedia.org/wiki/Computational_neuroscience): Computational neuroscience is the study of brain function in terms of the information processing properties of the structures that make up the nervous system. It is an interdisciplinary science that links the diverse fields of neuroscience, cognitive science, and psychology with electrical engineering, computer science, mathematics, and physics. Computational neuroscience is distinct from psychological connectionism and from learning theories of disciplines such as machine learning, neural networks, and computational learning theory in that it emphasizes descriptions of functional and biologically realistic neurons (and neural systems) and their physiology and dynamics. These models capture the essential features of the biological system at multiple spatial-temporal scales, from membrane currents, proteins, and chemical coupling to network oscillations, columnar and topographic architecture, and learning and memory. These computational models are used to frame hypotheses that can be directly tested by biological and/or psychological experiments.
Connectivity Analysis
Category > Software > Application > Connectivity Analysis
A software resource that engages, broadly speaking, in 'connectivity analysis'. Numerous types of child analyses are provided to delineate more specific types of connectivity analysis. Conectivity can be physical (i.e. DTI, tracer-base track tracing, etc.), or physiological (MEG, EEG, haemodynamic correlation, etc.).
Console (Text Based)
Environment > Console (Text Based)
Console-based programs.
Console (Text Based) has two sub-entries: Curses and Newt.
Constrained Region Growing
Category > Software > Application > Segmentation > Region Growing > Constrained Region Growing
Segmentation by constrained region growing techniques.
Consulting Services
Category > Information Resource > Consulting Services
Commercial providers of subject matter expertise that are interested in providing consulting services associated with the web site's scientific domains.
Copy Number Variation
Category > Software > Application > Genomic Analysis > SNP's & Genes > Copy Number Variation
Software related to the extraction of Copy Number Variation (CNV) information. Copy-number variations (CNVs)—a form of structural variation—are alterations of the DNA of a genome that results in the cell having an abnormal number of copies of one or more sections of the DNA. See http://en.wikipedia.org/wiki/Copy-number_variation
COR
Supported Data Format > COR
MGH-NMR COR format: http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/CorFormat
Correlation
Category > Software > Application > Time Domain Analysis > Correlation
Software application that performs time domain analysis using 'Correlation' techniques.
Correlation has two sub-entries: Autocorrelation and Cross-correlation.
Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported
License > Other/Proprietary License > Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported
http://creativecommons.org/licenses/by-nc-sa/3.0/legalcode
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International
License > Other/Proprietary License > Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International
You are free to: Share — copy and redistribute the material in any medium or format Adapt — remix, transform, and build upon the material Under the following terms: Attribution — You must give appropriate credit, provide a link to the license, and indicate if changes were made. You may do so in any reasonable manner, but not in any way that suggests the licensor endorses you or your use. NonCommercial — You may not use the material for commercial purposes. ShareAlike — If you remix, transform, or build upon the material, you must distribute your contributions under the same license as the original. For more details, see: https://creativecommons.org/licenses/by-nc-sa/4.0/
Creative Commons License
License > Creative Commons License
Tools/resources using a Creative Commons license: http://creativecommons.org/about/licenses/
Creutzfeldt-Jakob Syndrome
Diagnosis > Dementia > Creutzfeldt-Jakob Syndrome
Resource is related to or associated with application to Creutzfeldt-Jakob Disease. Creutzfeldt-Jakob disease (CJD) is a rare, degenerative, invariably fatal brain disorder. See also http://www.ninds.nih.gov/disorders/cjd/cjd.htm MESH_UID: D007562
Crohn Disease
Diagnosis > Crohn Disease
Resource is related to or associated with application to Crohn's disease. Ulcerative colitis is a related condition. The exact cause of Crohn's disease is unknown. It is a condition that occurs when your body's immune system mistakenly attacks and destroys healthy body tissue (autoimmune disorder).People with Crohn's disease have ongoing (chronic) inflammation of the gastrointestinal tract (GI tract). Crohn's disease may involve the small intestine, the large intestine, the rectum, or the mouth. The inflammation causes the intestinal wall to become thick. The following seem to play a role in Crohn's disease:Crohn's disease may occur at any age. It usually occurs in people between ages 15 - 35. See also http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0001295/  MESH_UID: D003424
Cross-correlation
Category > Software > Application > Time Domain Analysis > Correlation > Cross-correlation
Software application that performs time domain analysis using 'Cross-correlation' technique.
csh/tcsh
Programming Language > Unix Shell > csh/tcsh
C Shell
CT
Domain > CT
Computed Tomography (CT) (also CAT). Represents projects designed to operate on, with, or for CT-based data acquisition, processing, storage, etc.
CTF
Supported Data Format > MEG Formats > CTF
CTF. This is a whole folder with many files in it.
Curses
Environment > Console (Text Based) > Curses
Curses-based software.
Curvature
Category > Software > Application > Surface Analysis > Curvature
Software application that performs a surface analysis of 'Curvature'.
Curvature has two sub-entries: Gaussian Curvature and Mean Curvature.
Cygwin
Operating System > POSIX/UNIX-like > Cygwin
Cygwin environment for Windows: http://www.cygwin.com/
Danish
Natural Language > Danish
Danish
Data
Category > Information Resource > Data Resource > Data
An information resource that is comprised of 'data' itself. The data can be of arbitrary form, but is on contrast to the delivery mechanism itself, and is intended to be operated upon to generate information.
Database
Category > Information Resource > Data Resource > Database
A data resource that delivers its' data by way of a 'database', which involved a structured data store and interrogation methods for data selection. NeuroLexID: nlx_res_20090405
Database Application
Category > Software > Application > Database Application
A software application that provides 'database' functionality. In contrast to the data itself or an instance of a database, which are 'Data Resources'.
Data License
License > Data License
Licenses designed for data distribution and use.
Data License has two sub-entries: BIRN Data License and COINS Data Use Agreement.
Data Model
Category > Information Resource > Data Model
An Information Resource that captures information in explicit mathematical forms that generalize and provides extensibility to the information (i.e. Modeling).
Data Resource
Category > Information Resource > Data Resource
Sources of data. Data may be unprocessed (such as raw image data) or derived data (such as volumetric measurements derived from image data) and associated metadata for either. NeuroLexID: nlx_res_20090102
Data Resource has the following sub-entries: Atlas Data, Data, Database, Neuromorphological Data, Other Data Resource, and Test Data.
Dementia
Diagnosis > Dementia
Resource is related to or associated with application to Dementia. Dementia is not a specific disease. See also http://www.ninds.nih.gov/disorders/dementias/dementia.htm MESH_UID: D003704
Dementia, Multi-Infarct
Diagnosis > Dementia > Dementia, Multi-Infarct
Resource is related to or associated with application to Multi-Infarct Dementia. Multi-infarct dementia (MID) is a common cause of memory loss in the elderly. See also http://www.ninds.nih.gov/disorders/multi_infarct_dementia/multi_infarct_dementia.htm MESH_UID: D015161
Dendrite Analysis
Category > Software > Application > Neuronal Characterization > Dendrite Analysis
Software application for the quantification of the neuronal properties of 'Dendrite Analysis'.
Dendrite Analysis has one sub-entry: Dendrite Number.
Dendrite Number
Category > Software > Application > Neuronal Characterization > Dendrite Analysis > Dendrite Number
Software application for the quantification of the neuronal properties of 'Dendrite Number'.
Depression
Diagnosis > Depression
Resource is related to or associated with application to Depression. Clinical depression is a mood disorder in which feelings of sadness, loss, anger, or frustration interfere with everyday life for a longer period of time. See also http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0003697/ MESH_UID: D003863
Developers
Intended Audience > Developers
Programs and resources for software developers, to include libraries.
Development Status
An indication of the development status of the software or resource.
Development Status has the following sub-entries: 1 - Planning, 2 - Pre-Alpha, 3 - Alpha, 4 - Beta, and 5 - Production/Stable/Mature.
Diabetes Mellitus
Diagnosis > Diabetes Mellitus
Resource is related to or associated with application to Diabetes. Diabetes also increases your risk of having glaucoma, cataracts, and other eye problems. Diabetic retinopathy is caused by damage to blood vessels of the retina. The retina is the layer of tissue at the back of the inner eye. It changes light and images that enter the eye into nerve signals that are sent to the brain.Diabetic retinopathy is the leading cause of blindness in working-age Americans. People with type 1 and type 2 diabetes are at risk for this condition. See also http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0002192/ MESH_UID: D003920
Diagnosis
Listing of specific diseases that the resource is relevant, related or applied to.
DICE Coefficient
Category > Software > Application > Quantification > Overlap Metrics > DICE Coefficient
Software application for the quantification of the overlap metric of 'DICE Coefficient'.
DICOM
Supported Data Format > DICOM
Digital Imaging and Communications in Medicine (DICOM): http://medical.nema.org/
Diffusion Application
Category > Software > Application > Diffusion Application
A software resource that handled diffusion imaging and analysis, generally.
Diffusion MR Fiber Tracking
Category > Software > Application > Tractography > Fiber Tracking > Diffusion MR Fiber Tracking
Software application for tractography that involves fiber tracking using 'Diffusion MR' image data.
Diffusion Spectrum
Category > Software > Application > Modeling > Super Tensor > Diffusion Spectrum
Software related to diffusion spectrum analysis.
Directed Transfer Analysis
Category > Software > Application > Connectivity Analysis > Directed Transfer Analysis
A resource that performs Direted Transfer analysis.
Direction
Category > Software > Application > Modeling > Tensor Metric > Direction
Software application that performs tensor metric analysis of 'Direction'.
Discriminant Analysis
Category > Software > Application > Statistical Operation > Discriminant Analysis
Software application that performs the statistical operation of 'Discriminant Analysis'.
DKE License
License > Other/Proprietary License > DKE License
1. Diffusional Kurtosis Estimator (“the Software”) is provided ''as is'' solely for non-commercial research use. 2. We make no express or implied warranties as to the accuracy of the Software, or that it will be suitable for any specific purpose or for use under any particular condition. We disclaim all responsibility for the use which is made of the Software. We further disclaim any liability for the outcomes arising from using the Software. 3. The Software uses methods claimed in US patent application publication number US2012/0002851. 4. If you use the Software in your research, we ask that you cite the following paper in your publications: Tabesh A, Jensen JH, Ardekani BA, Helpern JA. Estimation of tensors and tensor-derived measures in diffusional kurtosis imaging. Magn Reson Med 2011; 65:823-836.
Domain
The high-level, broad data domain or data acquisition methodology to which the resource is principally designed to operate with.
Domain Independent
Domain > Domain Independent
Represents projects designed to operate independently of (with no dependencies on) the domain of data acquisition, processing, storage, etc.
dtiBrainScope
License > Other/Proprietary License > dtiBrainScope
Any work or publicatoin that uses thi spackage please cite related references http://www.columbia.edu/~dx2103
DTI-TK license
License > Other/Proprietary License > DTI-TK license
1) Permission is granted to use this software without charge for academic and non-commercial research use only. 2) Redistribution of the provided software packages in any form is explicitly prohibited. 3) You agree to include citations to this software when it is used to produce results for publications. 4) The software is provided "as is". The developer of the software assumes no liability or responsibility for its use. 5) The software has not been evaluated for clinical use. 6) The support for the software is provided on a voluntary basis.
Dynamic Causal Analysis
Category > Software > Application > Connectivity Analysis > Dynamic Causal Analysis
A resource that performs Dynamic Causal analysis.
Dyslexia
Diagnosis > Dyslexia
Resource is related to or associated with application to Dyslexia. Dyslexia is a brain-based type of learning disability that specifically impairs a person's ability to read. See also http://www.ninds.nih.gov/disorders/dyslexia/dyslexia.htm MESH_UID: D004410
EDF/BDF/GDF
Supported Data Format > EEG Formats > EDF/BDF/GDF
EDF/BDF/GDF formats based on European Data Format (EDF), an extension from 16-bit to 32bits (BDF), and an extension with event table support (GDF). EDF is the most popular data format for exchanging files. File extensions: .edf, .bdf, .gdf
EEG
Category > Hardware > Physiological Recording > EEG
Hardware for electroencephalography (EEG).
EEG has one sub-entry: Event-Related Potentials.
EEG Formats
Supported Data Format > EEG Formats
A category to house the numerous EEG data formats
EEG Formats has the following sub-entries: ANT, Brain Vision Analyzer Data Exchange Format, CNT, EDF/BDF/GDF, and EGI.
EEG/MEG/ECoG
Domain > EEG/MEG/ECoG
Electro Encephalography (EEG), Magneto Encephalography (MEG), Electro Cortocography (ECoG). Represents projects designed to operate on, with, or for EEG/MEG/ECoG-based data acquisition, processing, storage, etc.
EEG Modeling
Category > Software > Application > Modeling > Forward - Inverse > EEG Modeling
Software application to perform modeling of 'Forward - Inverse' problems applied to EEG.
EGI
Supported Data Format > EEG Formats > EGI
EGI (Binary simple format, Matlab format, Native format and MFF format). File extensions: .raw or .mff. For more detail, see egi.com
Elliptical Harmonics
Category > Software > Application > Shape Analysis > Shape Decomposition > Elliptical Harmonics
Shape decomposition using 'Elliptical Harmonics'.
End-User License Agreement for HistoloZee
License > Other/Proprietary License > End-User License Agreement for HistoloZee
END-USER LICENSE AGREEMENT (EULA) for HistoloZee (hereafter termed "Software") by the Penn Image Computing and Science Lab (the "Licensor") PLEASE READ THIS AGREEMENT CAREFULLY. This EULA is a legal agreement between you and the Licensor. By installing, copying, or otherwise using the Software, you agree to be bound by the terms of this agreement. If you do not agree to these terms, then do not install or use the Software. 1. FREEWARE You are permitted to use this Software free of charge for academic and non-commercial research purposes only. You agree to claim no proprietary rights in and to the Software, its methods, or algorithms. You acknowledge that the Licensor retains all copyrights and other proprietary rights in and to the Software. 2. DISTRIBUTION You may copy and distribute the Software in its unmodified form via electronic means under the condition that this EULA, the original copyright notice, and any accompanying documentation remain intact. You may not charge any fee for the copy or use of the Software. You must distribute a copy of this EULA with any copy of the Software, and all recipients of the Software must agree to be bound by the terms and conditions of this EULA. 3. RESTRICTIONS You may not modify, reverse engineer, de-compile, or disassemble the Software. You may not rent, lease, or lend the Software. You may not remove any proprietary notices, labels, or trademarks on the Software or its accompanying documentation. 4. ACKNOWLEDGEMENT You agree to include citations to the Software when it is used to produce results for publications. 5. NO WARRANTIES The Licensor expressly disclaims any warranty for the Software and assumes no liability or responsibility for its use. THE SOFTWARE IS PROVIDED "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESS OR IMPLIED FOR ANY PURPOSES. THE ENTIRE RISK ARISING OUT OF USE OR PERFORMANCE OF THE SOFTWARE REMAINS WITH YOU. Again: You agree to assume the entire risk as to the quality and performance of the Software. In no event shall the Licensor or anyone else who has been involved in the creation, development, production, testing, or delivery of this software be liable for any direct, incidental or consequential damages, such as, but not limited to, loss of data resulting from the use of this Software, or arising out of any breach of warranty. In no event will the Licensor be liable for any damages, claims or costs whatsoever or any consequential, indirect, incidental damages, or any lost profits, savings, or time, even if the Licensor has been advised of the possibility of such loss, damages, claims or costs or for any claim by any third party. The Software has not been evaluated for clinical use. Support for the Software is provided on a voluntary basis. HistoloZee is Copyright (C) 2012-2016 by Daniel H. Adler and Paul A. Yushkevich of PICSL
End Users
Intended Audience > End Users
Programs and resources for end users.
English
Natural Language > English
English
Environment
Run-time environment required for this program.
Epigenomics
Category > Software > Application > Genomic Analysis > Other Omics > Epigenomics
Software that extracts information about the epigenome. Epigenomics is the study of the complete set of epigenetic modifications on the genetic material of a cell, known as the epigenome. See http://en.wikipedia.org/wiki/Epigenomics
Epilepsy
Diagnosis > Epilepsy
Resource is related to or associated with application to Epilepsy. The epilepsies are a spectrum of brain disorders ranging from severe, life-threatening and disabling, to ones that are muchmore benign. See also http://www.ninds.nih.gov/disorders/epilepsy/epilepsy.htm MESH_UID: D004827
Epilepsy Research - Henry Ford Hospital License
License > Other/Proprietary License > Epilepsy Research - Henry Ford Hospital License
LICENSE: Copyright (c) 2016, Henry Ford Hospital – Image Analysis Laboratory All rights reserved. Redistribution and use of the source codes with or without modification, are permitted provided that the following conditions are met: * Redistributions of the shared data and the source codes must retain the above copyright notice, this list of conditions and the following disclaimer. * Redistributions in the binary form of the shared code must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution DISCLAIMER: THE SHARED DATA, THE CLINICAL INFORMATION AND MATLAB SOURCE CODES ARE PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE SHARED DATA AND SOURCE CODES, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. USERS MAY USE ANY INFORMATION OF THE SHARED DATA AT THEIR OWN RISK AND THE SHARED DATA AND INFORMATION ARE NOT FOR THE PURPOSE OF BEING USED IN BUSSINESS, COMMERCIALIZATION, AND CLINIC; THEY HAVE BEEN SHARED JUST FOR THE RESEARCH PURPOSES
E-Prime Extensions for fMRI
License > Other/Proprietary License > E-Prime Extensions for fMRI
Single user license available. EULA available upon request.
E-Prime License
License > Other/Proprietary License > E-Prime License
Single user and network licenses available. EULA upon request.
Event Related Potential
Category > Software > Application > Time Domain Analysis > Event Related Potential
Software related to analysis of Event Related Potentials.
Event-Related Potentials
Category > Hardware > Physiological Recording > EEG > Event-Related Potentials
Voltage potentials recorded in response to programmed auditory or visual stimuli. Different ERP protocols have been associated with different, specific cognitive domains.
Expectation Minimization
Category > Software > Application > Segmentation > Expectation Minimization
Segmentation by means of 'Expectation Minimization' techniques.
Experimental Control
Category > Software > Application > Experimental Control
Software for the control of experimental conditions.
Experiment Control
Category > Hardware > Experiment Control
Hardware for control of experimental conditions.
Experiment Control has two sub-entries: Response Monitoring and Stimulus Presentation.
Eye Tracking
Category > Hardware > Physiological Recording > Eye Tracking
Hardware for eye tracking.
Federal Funding Resource
Category > Funding Resource > Federal Funding Resource
A funding resource where money is obtained from the central government. http://bioontology.org/ontologies/BiomedicalResourceOntology.owl#Federal_Funding_Resource
Fiber Tracking
Category > Software > Application > Tractography > Fiber Tracking
Software application for tractography that involves 'Fiber Tracking'.
Fiber Tracking has one sub-entry: Diffusion MR Fiber Tracking.
Fiducial
Category > Software > Application > Spatial Transformation > Registration > Fiducial
Software application that performs image registration using 'Fiducial' matching techniques.
FIF
Supported Data Format > MEG Formats > FIF
FIF. Neuromag
File Format
Category > Information Resource > Information Specification > File Format
Information specification that describes the format of information as contained in files.
Filtered
Category > Software > Application > Image Reconstruction > Tomography > Back Projection > Filtered
Software application for the reconstruction of tomographic images using 'Filtered' back projection techniques.
Filtering
Category > Software > Application > Spatial Transformation > Frequency Domain > Filtering
Software application that performs image spatial transformation using the frequency domain technique of 'Filtering'.
Filtering has the following sub-entries: Band Pass, High Pass, and Low Pass.
Finite Element Analysis
Category > Software > Application > Modeling > Finite Element Analysis
Software application to perform modeling using 'Finite Element Analysis' techniques.
FIRMM license
License > Other/Proprietary License > FIRMM license
------------------- Copyright (c) 2017 Washington University, Oregon Health & Science University Authored by: Jonathan M. Koller, Eric A. Earl, Rachel L. Klein, Andrew N. Van, Oscar Miranda-Dominguez, Nico U.F. Dosenbach, Damien A. Fair Please cite: Dosenbach NUF, Koller JM, Earl EA, Miranda-Dominguez O, Klein RL, Van AN, Snyder AZ, Nagel BJ, Nigg JT, Nguyen A, Wesevich V, Greene DJ, Fair DA. Real-time motion analytics during brain MRI improve data quality and reduce costs. Neuroimage. 2017. FIRMM (Framewise Integrated Real-time MRI Monitoring) is free for non-commercial use by academic, government, and non-profit/not-for-profit institutions. A commercial version of the software is available, and licensed through the Office of Technology Management at Washington University School of Medicine and through the Office of Technology Transfer and Business Development at Oregon Health & Science University. For more information regarding the commercial license, please email your request to otm@dom.wustl.edu or techmgmt@ohsu.edu. BY DOWNLOADING THIS SOFTWARE YOU AGREE THAT THE SOFTWARE PROVIDED HEREUNDER IS EXPERIMENTAL AND IS PROVIDED “AS IS”, WITHOUT ANY WARRANTY OF ANY KIND, EXPRESSED OR IMPLIED, INCLUDING WITHOUT LIMITATION WARRANTIES OF MERCHANTABILITY OR FITNESS FOR ANY PARTICULAR PURPOSE, OR NON-INFRINGEMENT OF ANY THIRD-PARTY PATENT, COPYRIGHT, OR ANY OTHER THIRD-PARTY RIGHT. IN NO EVENT SHALL THE CREATORS OF THE SOFTWARE OR WASHINGTON UNIVERSITY OR OREGON HEALTH & SCIENCE UNIVERSITY BE LIABLE FOR ANY DIRECT, INDIRECT, SPECIAL, OR CONSEQUENTIAL DAMAGES ARISING OUT OF OR IN ANY WAY CONNECTED WITH THE SOFTWARE, THE USE OF THE SOFTWARE, OR THIS AGREEMENT, WHETHER IN BREACH OF CONTRACT, TORT OR OTHERWISE, EVEN IF SUCH PARTY IS ADVISED OF THE POSSIBILITY OF SUCH DAMAGES. --------------------------
FisWidgets
Pipelines and Workflows Supported > FisWidgets
FisWidgets: http://grommit.lrdc.pitt.edu/fiswidgets/
Flattening
Category > Software > Application > Spatial Transformation > Flattening
Software that perform spatial transformations pertaining to the flattening of a non-flat object.
Flow
Category > Software > Application > Temporal Transformation > Temporal Curve Fitting > Haemodynamic Response > Perfusion > Flow
Software application that performs temporal curve fitting for haemodynamic characterization of perfusion blood 'Flow'.
fMRI Grocer License
License > Other/Proprietary License > fMRI Grocer License
This toolbox (fMRI Grocer)are distributed free for non-commercial research purposes, but ownership, copyright, and all rights are retained by the authors, Senhua Zhu & Hengyi Rao, in the Center for functional Neuroimaging, University of Pennsylvania.
FNIR COBI Suite
License > Other/Proprietary License > FNIR COBI Suite
Commercial license: Data collection software application for functional NIRS brain imaging.
Format Conversion
Category > Software > Application > Format Conversion
Software application that manipulates data formats
Fortran
Programming Language > Fortran
A procedural programming language primarily used in numeric computation and scientific research.
Forward - Inverse
Category > Software > Application > Modeling > Forward - Inverse
Software application to perform modeling of 'Forward - Inverse' problems.
Forward - Inverse has two sub-entries: EEG Modeling and MEG Modeling.
Fourier
Category > Software > Application > Image Reconstruction > Tomography > Fourier
Software application for the reconstruction of tomographic images using 'Fourier' techniques.
Fourier Time-domain Analysis
Category > Software > Application > Temporal Transformation > Fourier Time-domain Analysis
Software application that performs temporal transformation for 'Fourier Time-domain Analysis'.
Fourier Transform
Category > Software > Application > Spatial Transformation > Frequency Domain > Fourier Transform
Software application that performs image spatial transformation using the frequency domain technique of 'Fourier Transform'.
FreeBSD
Operating System > POSIX/UNIX-like > BSD > FreeBSD
FreeBSD operating system.
Free For Non-Commercial Use Only
License > Free For Non-Commercial Use Only
Free for non-commercial use only.
FreeSurfer License
License > Other/Proprietary License > FreeSurfer License
From http://surfer.nmr.mgh.harvard.edu/fswiki/FreeSurferLicense: IMPORTANT- READ CAREFULLY: This End-User License Agreement ("EULA") is a legal agreement between you, the "licensee" (either an individual or a single entity), and CorTechs Labs, Inc.. For the purposes of this EULA, FreeSurfer includes computer software, documentation and sample datasets, the associated media, any printed materials, and any online or electronic documentation. By installing, copying, or otherwise using FreeSurfer, the licensee agrees to be bound by the terms of this EULA. If you do not agree to the terms of this EULA, then you may not install, copy or otherwise use FreeSurfer, and you are required to destroy the CD and remove any files that you may have already installed. 1. GRANT OF LICENSE. This EULA grants the licensee the following rights: Software. The licensee may install one copy of FreeSurfer on a single computer. Network Use. The licensee may use FreeSurfer over an internal network, and the licensee may distribute FreeSurfer to other computers over an internal network. Documentation. The licensee may make a copy of the documentation for internal use only. This EULA grants the licensee a nonexclusive, nontransferable, no-cost, royalty free right to use the FreeSurfer for licensee's internal, non-commercial, non-clinical, academic research purposes only, under the terms of this agreement. 2. LIMITATIONS Academic Version. FreeSurfer can only be used by Colleges, Universities, and other Non-Profit Research Organizations for research only. Colleges, Universities, and other Non-Profit Research Organizations may not use FreeSurfer in any commercial arrangement to any third-parties when payments are made for services rendered, either directly, or indirectly, when the functionality contained within FreeSurfer has been used. For-profit organizations and companies are explicitly prohibited from using this software for any purposes. Rental. The licensee may not rent or lease FreeSurfer. Commercial Use. The licensee may not charge anyone for any activity that uses FreeSurfer. For example, the licensee may not charge for segmentation, quantification, and/or corticalsurface reconstruction using FreeSurfer. The licensee cannot charge others for installation of the software, nor can they pay any entity, other than a full-time employee, to install and operate the software. The licensee may not incorporate FreeSurfer or any of its parts into any commercial code or product of any kind. Software Transfer. The licensee may not transfer FreeSurfer to any third party. Clinical Use: This software may not and should never be used for clinical purposes. Software used for clinical purposes may require regulatory documentation and associated filings. Termination. Without prejudice to any other rights, CorTechs Labs, Inc. may terminate this EULA if the licensee fails to comply with the terms and conditions of this EULA. In such an event, the licensee must destroy all copies of FreeSurfer and all of its component parts. 3. COPYRIGHT and TRADEMARKS. FreeSurfer. All title and copyrights in and to FreeSurfer (including but not limited to any code, documentation, images, text or data) are owned by CorTechs Labs, Inc. and The General Hospital Corporation doing business as Massachusetts General Hospital. FreeSurfer is protected by copyright laws and international copyright treaties, as well as other intellectual property laws and treaties. FreeSurfer is licensed, not given away or sold. Trademarks. This License does not grant any rights to use the trade names "FreeSurfer", "CorTechs Labs, Inc.", "CorTechs", "CSurf," “Massachusetts General Hospital” or any other trademarks or trade names belonging to CorTechs Labs, Inc. or The General Hospital Corporation unless explicitly permitted in writing by CorTechs Labs, Inc. or The General Hospital Corporation, respectively. Tck/Tk. Parts of this software are based on the Tcl/Tk software copyrighted by the Regents of the University of California, Sun Microsystems, Inc., and other parties. The original license terms of the Tcl/Tk software distribution is included in the file docs/license.tcltk. (Please see Appendix 1) Tix. Parts of this software are based on the Tix software copyrighted by the Ioi Kim Lam, and Expert Interface Technologies. The original license terms of the Tix software distribution is included in the file docs/license.tix. (Please see Appendix 2) HTML. Parts of this software are based on the HTML Library software copyrighted by Sun Microsystems, Inc. The original license terms of the HTML Library software distribution is included in the file docs/license.html_lib. (Please see Appendix 2) Mesa. Parts of this software link to the Mesa library software copyrighted by Brian Paul. This software is covered under the GNU LIBRARY GENERAL PUBLIC LICENSE, Version 2, which is included in the file docs/license.gnu. (Please see Appendix 3) 4. NO SUPPORT OR WARRANTY. FreeSurfer is provided with no support whatsoever. CorTechs Labs, Inc. and/or The General Hospital Corporation may, at their sole discretion, provide bug reports or upgrades at www.nmr.mgh.harvard.edu, but CorTechs and/or The General Hospital Corporation do not have any obligation to notify users of this occurring. FreeSurfer may contain in whole or in part pre-release, untested, or not fully tested works. FreeSurfer may contain errors that could cause failures or loss of data, and may be incomplete or contain inaccuracies. LICENSEE expressly acknowledges and agrees that use of FreeSurfer, or any portion thereof, is at LICENSEE's sole and entire risk, and that FreeSurfer is an experimental program. FreeSurfer is provided "AS IS" and without warranty, upgrades or support of any kind. CORTECHS LABS, INC. and THE GENERAL HOSPITAL CORPORATION EXPRESSLY DISCLAIMS ALL WARRANTIES AND/OR CONDITIONS, EXPRESS OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES AND/OR CONDITIONS OF MERCHANTABILITY OR SATISFACTORY QUALITY AND FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT OF THIRD PARTY RIGHTS. CORTECHS LABS, INC. AND THE GENERAL HOSPITAL CORPORATIN DO NOT WARRANT THAT THE FUNCTIONS CONTAINED IN FREESURFER WILL MEET LICENSEE'S REQUIREMENTS, OR THAT THE OPERATION OF FREESURFER WILL BE UNINTERRUPTED OR ERROR-FREE, OR THAT DEFECTS IN FREESURFER WILL BE CORRECTED. NO ORAL OR WRITTEN INFORMATION OR ADVICE GIVEN BY CORTECHS LABS, INC.OR THE GENERAL HOSPITAL CORPORATION OR A CORTECHS LABS, INC. AUTHORIZED REPRESENTATIVE SHALL CREATE A WARRANTY OR IN ANY WAY INCREASE THE SCOPE OF THIS WARRANTY. LICENSEE ACKNOWLEDGES THAT FREESURFER IS NOT INTENDED FOR CLINICAL USE AND SHOULD NOT BE USED FOR DIAGNOSIS, TREATMENT PLANNING, OR ANY OTHER CLINICAL PURPOSE. 5. INFRINGEMENT. If any portion of, or functionality implemented by, FreeSurfer becomes the subject of a claim of infringement, CorTechs Labs, Inc. may, at its option: (a) attempt to procure the rights necessary for CorTechs Labs, Inc. and LICENSEE to continue using the Affected Code; (b) modify the Affected Code so that it is no longer infringing; or (c) suspend LICENSEE's rights to use, reproduce, modify, sublicense and distribute the Affected Code until a final determination of the claim is made by a court or governmental administrative agency of competent jurisdiction and CorTechs Labs, Inc. lifts the suspension as set forth below. Such suspension of rights will be effective immediately upon CorTechs Labs, Inc.'s posting of an email notice to such effect to the LICENSEE. Upon such final determination being made, if CorTechs Labs, Inc. is legally able, without the payment of a fee or royalty, to resume use, reproduction, modification, sublicensing and distribution of the Affected Code, CorTechs Labs, Inc. may, it CorTechs' sole discretion, lift the suspension of rights to the Affected Code by posting of an email notice to such effect to the LICENSEE. LICENSEE: agrees to release and to indemnify CorTechs Labs, Inc. and The General Hospital Corporation and any of their trusties, directors, employees, professional staff or agents from any and all claims and damages in any way arising from the use of FreeSurfer by you, your Institution, or any other individual or entity obtaining access to FreeSurfer from you or your institution. 6. LIMITATION OF LIABILITY. UNDER NO CIRCUMSTANCES SHALL CORTECHS LABS, INC AND THE GENERAL HSOPITAL CORPORATION BE LIABLE FOR ANY INCIDENTAL, SPECIAL, INDIRECT OR CONSEQUENTIAL DAMAGES ARISING OUT OF OR RELATING TO THIS LICENSE OR LICENSEE'S USE OR INABILITY TO USE FREESURFER, OR ANY PORTION THEREOF, whether under a theory of contract, warranty, tort (including negligence), products liability or otherwise, even if CorTechs Labs, Inc. has been advised of the possibility of such damages AND NOTWITHSTANDING THE FAILURE OF ESSENTIAL PURPOSE OF ANY REMEDY. In no event shall CorTechs Labs, Inc.'s total liability to LICENSEE for all damages under this License exceed the amount of fifty dollars ($50.00). 7. MISCELLANEOUS. U.S. Government End Users. The Covered Code is a "commercial item" as defined in FAR 2.101. Government software and technical data rights in the Covered Code include only those rights customarily provided to the public as defined in this License. This customary commercial license in technical data and software is provided in accordance with FAR 12.211 (Technical Data) and 12.212 (Computer Software) and, for Department of Defense purchases, DFAR 252.227-7015 (Technical Data -- Commercial Items) and 227.7202-3 (Rights in Commercial Computer Software or Computer Software Documentation). Accordingly, all U.S. Government End Users acquire Covered Code with only those rights set forth herein. Waiver; Construction. Failure by CorTechs Labs, Inc. to enforce any provision of this License will not be deemed a waiver of future enforcement of that or any other provision. Any law or regulation which provides that the language of a contract shall be construed against the drafter will not apply to this License. Dispute Resolution. Any litigation or other dispute resolution between LICENSEE and CorTechs Labs, Inc. relating to this License shall take place in the Commonwealth of Massachusetts, and LICENSEE and CorTechs Labs, Inc. hereby consent to the personal jurisdiction of, and venue in, the state and federal courts within that Commonwealth with respect to this License. The application of the United Nations Convention on Contracts for the International Sale of Goods is expressly excluded. Entire Agreement; Governing Law. This License constitutes the entire agreement between the parties with respect to the subject matter hereof. This License shall be governed by the laws of the United States and the Commonwealth of Massachusetts, except that body of Massachusetts law concerning conflicts of law. Quebec. Where LICENSEEs are located in the province of Quebec, Canada, the following clause applies: The parties hereby confirm that they have requested that this License and all related documents be drafted in English. Les parties ont exigé que le présent contrat et tous les documents connexes soient rédigés en anglais. Authority. The person submitting this registration warrants that he/she has the authority to bind to this Agreement the party which he/she represents.
Freeware
License > Freeware
Freeware; see: http://en.wikipedia.org/wiki/Freeware. Freeware is distributed without charge to the user. Software distributed as freeware may be distributed as source or in binary form, typically has copyright restrictions, and may have redistribution restrictions.
French
Natural Language > French
French
Frequency Domain
Category > Software > Application > Spatial Transformation > Frequency Domain
Software application that performs image spatial transformation using 'Frequency Domain' techniques.
Frequency Domain has two sub-entries: Filtering and Fourier Transform.
FRIEND License
License > Other/Proprietary License > FRIEND License
FRIEND – Functional Real-Time Interactive Endogenous Neuromodulation and Decoding, Release 1.2 (c) 2012, D'Or Institute of Research and Education, Rede D´Or, Rio de Janeiro, Brazil (the "Software"). The Software remains the property of the D´Or Institute of Research and Education ("the Institute"). The Software is distributed "AS IS" under this Licence solely for non-commercial use in the hope that it will be useful, but in order that the Institute protects its assets for the benefit of its educational and research purposes, the Institute makes clear that no condition is made or to be implied, nor is any warranty given or to be implied, as to the accuracy of the Software, or that it will be suitable for any particular purpose or for use under any specific conditions. Furthermore, the Institute disclaims all responsibility for the use which is made of the Software. It further disclaims any liability for the outcomes arising from using the Software. The Licensee agrees to indemnify the Institute and hold the Institute harmless from and against any and all claims, damages and liabilities asserted by third parties (including claims for negligence) which arise directly or indirectly from the use of the Software or the sale of any products based on the Software. No part of the Software may be reproduced, modified, transmitted or transferred in any form or by any means, electronic or mechanical, without the express permission of the Institute. The permission of the Institute is not required if the said reproduction, modification, transmission or transference is done without financial return, and the conditions of this Licence are imposed upon the receiver of the product, and all original and amended source code is included in any transmitted product. You may be held legally responsible for any copyright infringement that is caused or encouraged by your failure to abide by these terms and conditions. You are not permitted under this Licence to use this Software commercially. Use for which any financial return is received shall be defined as commercial use, and includes (1) integration of all or part of the source code or the Software into a product for sale or license by or on behalf of Licensee to third parties or (2) use of the Software or any derivative of it for research with the final aim of developing software products for sale or license to a third party or (3) use of the Software or any derivative of it for research with the final aim of developing non-software products for sale or license to a third party, or (4) use of the Software to provide any service to an external organisation for which payment is received. If you are interested in using the Software commercially, please contact the Technological Innovation Center, the technology transfer department of the Institute, to negotiate a licence. Contact details are: innovation@idor.org quoting reference SW/001.
FSL License
License > Other/Proprietary License > FSL License
From http://www.fmrib.ox.ac.uk/fsl/fsl/licence.html: FMRIB Software Library, Release 4.0 (c) 2007, The University of Oxford (the "Software") The Software remains the property of the University of Oxford ("the University"). The Software is distributed "AS IS" under this Licence solely for non-commercial use in the hope that it will be useful, but in order that the University as a charitable foundation protects its assets for the benefit of its educational and research purposes, the University makes clear that no condition is made or to be implied, nor is any warranty given or to be implied, as to the accuracy of the Software, or that it will be suitable for any particular purpose or for use under any specific conditions. Furthermore, the University disclaims all responsibility for the use which is made of the Software. It further disclaims any liability for the outcomes arising from using the Software. The Licensee agrees to indemnify the University and hold the University harmless from and against any and all claims, damages and liabilities asserted by third parties (including claims for negligence) which arise directly or indirectly from the use of the Software or the sale of any products based on the Software. No part of the Software may be reproduced, modified, transmitted or transferred in any form or by any means, electronic or mechanical, without the express permission of the University. The permission of the University is not required if the said reproduction, modification, transmission or transference is done without financial return, the conditions of this Licence are imposed upon the receiver of the product, and all original and amended source code is included in any transmitted product. You may be held legally responsible for any copyright infringement that is caused or encouraged by your failure to abide by these terms and conditions. You are not permitted under this Licence to use this Software commercially. Use for which any financial return is received shall be defined as commercial use, and includes (1) integration of all or part of the source code or the Software into a product for sale or license by or on behalf of Licensee to third parties or (2) use of the Software or any derivative of it for research with the final aim of developing software products for sale or license to a third party or (3) use of the Software or any derivative of it for research with the final aim of developing non-software products for sale or license to a third party, or (4) use of the Software to provide any service to an external organisation for which payment is received. If you are interested in using the Software commercially, please contact Isis Innovation Limited ("Isis"), the technology transfer company of the University, to negotiate a licence. Contact details are: innovation@isis.ox.ac.uk quoting reference DE/1112. ------------------------------------------------------------------- The Standard Space Atlases The Harvard-Oxford, JHU, Juelich and Thalamus atlases, whilst not being the property of Oxford, are released under the terms of the main FSL licence above, at the request of their owners. These atlases should therefore not be used for commercial purposes; for such purposes please contact the primary co-ordinator for the relevant atlas: Harvard-Oxford: steve@fmrib.ox.ac.uk JHU: susumu@mri.jhu.edu Juelich: S.Eickhoff@fz-juelich.de Thalamus: behrens@fmrib.ox.ac.uk ------------------------------------------------------------------- FSLView FSLView sources are released under the terms of the GPL (http://www.gnu.org/copyleft/gpl.html). FSLView binaries use Qt (http://www.trolltech.com) which is released under GPL for X11. The FSLView binaries are released under the GPL, with the added exception that we also give permission to link this program with the Qt non-commercial edition, and distribute the resulting executable, without including the source code for the Qt non-commercial edition in the source distribution. FSLView is distributed "AS IS" under this Licence in the hope that it will be useful, but in order that the University as a charitable foundation protects its assets for the benefit of its educational and research purposes, the University makes clear that no condition is made or to be implied, nor is any warranty given or to be implied, as to the accuracy of the Software, or that it will be suitable for any particular purpose or for use under any specific conditions. Furthermore, the University disclaims all responsibility for the use which is made of the Software. It further disclaims any liability for the outcomes arising from using the Software. ------------------------------------------------------------------- TBSS TBSS uses some IRTK binaries, which are distributed under the IRTK license; see: http://www.doc.ic.ac.uk/~dr/software/copyright.html.
Funding Resource
Category > Funding Resource
A resource that provides monetary support in the form of grants, contracts, or gifts for research, training, or education. nlx_res_20090107 http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Resource.owl#nlx_res_20090107 http://bioontology.org/ontologies/BiomedicalResourceOntology.owl#Funding_Resource
Funding Resource has one sub-entry: Federal Funding Resource.
Gaussian Curvature
Category > Software > Application > Surface Analysis > Curvature > Gaussian Curvature
Software application that performs a surface analysis of 'Gaussian' curvature.
Genetic Association
Category > Software > Application > Genomic Analysis > SNP's & Genes > Genetic Association
Software designed to extract genetic association information. Genetic association is the occurrence, more often than can be readily explained by chance, of two or more traits in a population of individuals, of which at least one trait is known to be genetic. See http://en.wikipedia.org/wiki/Genetic_association
Genomic Analysis
Category > Software > Application > Genomic Analysis
A software resource engaged in the extraction or expression of genetic or genomic information.
Genomic Analysis has the following sub-entries: Next Generation Sequencing, Other Omics, Pathways & Networks, and SNP's & Genes.
German
Natural Language > German
German
GIfTI
Supported Data Format > GIfTI
GIfTI format: http://www.nitrc.org/projects/gifti/
Gnome
Environment > X11 Applications > Gnome
Programs designed to run in a Gnome environment.
GNU Affero General Public License v3
License > Other/Proprietary License > GNU Affero General Public License v3
http://www.gnu.org/licenses/agpl-3.0.html
GNU General Public License (GPL)
License > GPL-Style Open Source > GNU General Public License (GPL)
The GNU General Public License; see: http://www.gnu.org/copyleft/gpl.html The GPL requires that source code to a tool or resource be made available, and that modified versions of the tool or resource (including new tools which include part of the original tool's source) make the modified source available to users. A developer of a tool or resource distributed under the GPL ensures that users of the tool and of modified versions of the tool may always inspect the source code and modify the source to suit their needs, and that users may modify the tool as they see fit without being obliged to distribute their changes. While this may seem to encourage multiple versions of the same tool, the result is often that changes are passed back to the tool originator and incorporated into the original tool. NeuroLex: birnlex_2344
GNU General Public License v3
License > Other/Proprietary License > GNU General Public License v3
GNU GENERAL PUBLIC LICENSE Version 3, 29 June 2007 Copyright (C) 2007 Free Software Foundation, Inc. <http://fsf.org/> Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. See <https://www.gnu.org/licenses/gpl-3.0.de.html> for full text.
GNU GPL v2
License > Other/Proprietary License > GNU GPL v2
GNU GENERAL PUBLIC LICENSE Version 2, June 1991
GNU Lesser General Public License (LGPL)
License > GPL-Style Open Source > GNU Lesser General Public License (LGPL)
The GNU Lesser General License; see: http://www.gnu.org/licenses/lgpl.html The LGPL is similar to the GPL (GNU General Public License) in that it allows users to access, inspect, and modify the source code of a tool or resource released under the LGPL, and requires that distributed modifications of the tool or resource to be released under the LGPL. However, tools or resources that only link against a library released under the LGPL may be released under any license. Since the LGPL is typically applied to libraries, end users are in general not affected by the choice of the LGPL. Developers who release a library under the LGPL may miss an opportunity to promote free software (by, for instance, releasing under the GPL), but by using the LGPL may find increased use of their library, and will ensure that if a tool that links to their library may not release its source, the user does have the ability to inspect the workings of the called library routines. NeuroLex: birnlex_2345
GNU Lesser General Public License (plus Addendum)
License > Other/Proprietary License > GNU Lesser General Public License (plus Addendum)
See LGPL. ADDENDUM TO LIBEEP LGPL LICENSE Copyright (C) 2009 ANT www.ant-neuro.com Everyone is permitted to copy and distribute verbatim copies of this license addendum document, but changing it is not allowed. LIBEEP License Addendum. 1. License. The LIBEEP Library (the "Library") is licensed under GNU Lesser General Public License as published by the Free Software Foundation, version 3 of the License. 2. Relinking Exemption. You may distribute a combined work using a statically linked, unmodified copy of the Library under terms of your choice, without the relinking requirement stipulated under the GNU Lesser Public License, subject to the following conditions: a) This static relinking exemption covers only the LIBEEP. Other libraries which the LIBEEP may need are covered by their own respective licenses. b) Modification of the configure scripts, makefiles, or installation tools of the LIBEEP to support a specific platform does not constitute creating a modified copy based on the Library. c) Programs or binaries statically linked with the Library must be identified as such by including, in the Documentation or by other means (for example in the About Box or Online Help), the following statement: "This software uses the LIBEEP Library (http://libeep.sourceforge.net)." d) Subclassing from Objects or Widgets supplied by the Library involves no modifications to the source code of the Library itself, and does not constitute creating a modified copy based on the Library. 3. This LIBEEP License Addendum does not automatically apply to derivative works. When making derivative works based on the LIBEEP Library, this license addendum ceases to apply, and code will revert to the simple GNU Lesser General Public License. The Relinking Exemption only applies to unmodified versions of the Library. 4. If you do not accept or are unable to meet the conditions under (2), you may continue to distribute the combined work under the original GNU Lesser General Public License. END OF ADDENDUM
GPL-Style Open Source
License > GPL-Style Open Source
Free use in commercial and non-commercial settings. Derived works must be distributed under a similar license.
Gradient Non-linearity Unwarping Tool License
License > Other/Proprietary License > Gradient Non-linearity Unwarping Tool License
Requires research agreement with scanner manufacturers to get the table of spherical harmonics needed to perform the unwarping. The code license is that of the BIRN.
Granger Causality
Category > Software > Application > Connectivity Analysis > Granger Causality
A resource that performs Granger Causality analysis.
GSP Open Access Data Use Terms
License > Other/Proprietary License > GSP Open Access Data Use Terms
I request access to data collected as part of the Brain Genomics Superstruct Project (GSP) of Harvard University and the Massachusetts General Hospital, and I agree to the following: 1. I will not attempt to establish the identity of or attempt to contact any of the included human subjects. 2. I will not attempt to link any of the distributed data to any other data that might contain information about the included human subjects. 3. I understand that under no circumstances will the code that would link these data to Protected Health Information be given to me, nor will any additional information about individual human subjects be released to me under these Open Access Data Use Terms. 4. I will comply with all relevant rules and regulations imposed by my institution. This may mean that I need my research to be approved or declared exempt by a committee that oversees research on human subjects e.g., my Internal Review Board or Ethics Committee. Different committees operate under different national, state, and local laws and may interpret regulations differently, so it is important to ask about this. 5. I may redistribute original GSP Open Access data and any derived data as long as the data are redistributed under these same Data Use Terms. 6. I will acknowledge the use of GSP data and data derived from GSP data when publicly presenting any results or algorithms that benefitted from their use. 6a. Papers, book chapters, books, posters, oral presentations, and all other printed and digital presentations of results derived from GSP data should contain the following wording in the acknowledgments section: “Data were provided [in part] by the Brain Genomics Superstruct Project of Harvard University and the Massachusetts General Hospital, (Principal Investigators: Randy Buckner, Joshua Roffman, and Jordan Smoller), with support from the Center for Brain Science Neuroinformatics Research Group, the Athinoula A. Martinos Center for Biomedical Imaging, and the Center for Human Genetic Research. 20 individual investigators at Harvard and MGH generously contributed data to the overall project.” 6b. Authors of publications or presentations using GSP data should cite relevant publications describing the methods used by the GSP to acquire and process the data. The specific publications that are appropriate to cite in any given study will depend on what GSP data were used and for what purposes. An annotated and appropriately up-to-date list of publications that may warrant consideration is available at http://neuroinformatics.harvard.edu/gsp/ 6c. The GSP as a consortium should not be included as an author of publications or presentations if this authorship would be based solely on the use of GSP data. 7. Failure to abide by these guidelines will result in termination of my privileges to access GSP data.
g.tec Licence
License > Other/Proprietary License > g.tec Licence
Single place license. Updates are included for 1 year.
Haemodynamic Response
Category > Software > Application > Temporal Transformation > Temporal Curve Fitting > Haemodynamic Response
Software application that performs temporal curve fitting for 'Haemodynamic Response' calculations.
Haemodynamic Response has one sub-entry: Perfusion.
Hardware
Category > Hardware
A Resource that represents hardware that can be used in fMRI and related structural imaging.
Headache Disorders, Primary
Diagnosis > Headache Disorders, Primary
Resource is related to or associated with application to Headache. There are four types of headache:  vascular, muscle contraction (tension), traction, and inflammatory. See also http://www.ninds.nih.gov/disorders/headache/headache.htm MESH_UID: D051270
Headache Disorders, Primary has one sub-entry: Migraine Disorders.
HFH_DTI_DATA_TOOLS_License
License > Other/Proprietary License > HFH_DTI_DATA_TOOLS_License
Copyright (c) 2016, Henry Ford Hospital – Image Analysis Laboratory All rights reserved. Redistribution and use of the source codes with or without modification, are permitted provided that the following conditions are met: * Redistributions of the shared data and the source codes must retain the above copyright notice, this list of conditions and the following disclaimer. * Redistributions in the binary form of the shared code must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution DISCLAIMER: THE SHARED DATA, THE CLINICAL INFORMATION AND MATLAB SOURCE CODES ARE PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE SHARED DATA AND SOURCE CODES, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. USERS MAY USE ANY INFORMATION OF THE SHARED DATA AT THEIR OWN RISK AND THE SHARED DATA AND INFORMATION ARE NOT FOR THE PURPOSE OF BEING USED IN BUSSINESS, COMMERCIALIZATION, AND CLINIC; THEY HAVE BEEN SHARED JUST FOR THE RESEARCH PURPOSES.
HFH_DTI_License
License > Other/Proprietary License > HFH_DTI_License
Copyright (c) 2016, Henry Ford Hospital – Image Analysis Laboratory All rights reserved. Redistribution and use of the source codes with or without modification, are permitted provided that the following conditions are met: * Redistributions of the shared data and the source codes must retain the above copyright notice, this list of conditions and the following disclaimer. * Redistributions in the binary form of the shared code must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution DISCLAIMER: THE SHARED DATA, THE CLINICAL INFORMATION AND MATLAB SOURCE CODES ARE PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE SHARED DATA AND SOURCE CODES, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. USERS MAY USE ANY INFORMATION OF THE SHARED DATA AT THEIR OWN RISK AND THE SHARED DATA AND INFORMATION ARE NOT FOR THE PURPOSE OF BEING USED IN BUSINESS, COMMERCIALIZATION, AND CLINIC; THEY HAVE BEEN SHARED JUST FOR THE RESEARCH PURPOSES.
HFH hippocampus segmentation
License > Other/Proprietary License > HFH hippocampus segmentation
The dataset is free to use for research and education. Please refer to the following article if you use it in your publications: K. Jafari-Khouzani, K. Elisevich, S. Patel, and H. Soltanian-Zadeh, “Dataset of magnetic resonance images of nonepileptic subjects and temporal lobe epilepsy patients for validation of hippocampal segmentation techniques,” Neuroinformatics, 2011.
HFHS_TLE_Patients_License
License > Other/Proprietary License > HFHS_TLE_Patients_License
LICENSE: Copyright (c) 2016, Henry Ford Hospital – Image Analysis Laboratory All rights reserved. Redistribution and use of the source codes with or without modification, are permitted provided that the following conditions are met: * Redistributions of the shared data and the source codes must retain the above copyright notice, this list of conditions and the following disclaimer. * Redistributions in the binary form of the shared code must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution DISCLAIMER: The shared data, the clinical information and MATLAB source codes are provided by the copyright holders and contributors "as is" and any express or implied warranties, including, but not limited to, the implied warranties of merchantability and fitness for a particular purpose are disclaimed. In no event shall the copyright owner or contributors be liable for any direct, indirect, incidental, special, exemplary, or consequential damages (including, but not limited to, procurement of substitute goods or services; loss of use, data, or profits; or business interruption) however caused and on any theory of liability, whether in contract, strict liability, or tort (including negligence or otherwise) arising in any way out of the use of the shared data and source codes, even if advised of the possibility of such damage. Users may use any information of the shared data at their own risk and the shared data and information are not for the purpose of being used in business, commercialization, and clinic; they have been shared just for the research purposes.
HFH_TLE_T1_Hip_Segm License
License > Other/Proprietary License > HFH_TLE_T1_Hip_Segm License
LICENSE: Copyright (c) 2016, Henry Ford Hospital – Image Analysis Laboratory All rights reserved. Redistribution and use of the source codes with or without modification, are permitted provided that the following conditions are met: * Redistributions of the shared data and the source codes must retain the above copyright notice, this list of conditions and the following disclaimer. * Redistributions in the binary form of the shared code must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution DISCLAIMER: The shared data, the clinical information and MATLAB source codes are provided by the copyright holders and contributors "as is" and any express or implied warranties, including, but not limited to, the implied warranties of merchantability and fitness for a particular purpose are disclaimed. In no event shall the copyright owner or contributors be liable for any direct, indirect, incidental, special, exemplary, or consequential damages (including, but not limited to, procurement of substitute goods or services; loss of use, data, or profits; or business interruption) however caused and on any theory of liability, whether in contract, strict liability, or tort (including negligence or otherwise) arising in any way out of the use of the shared data and source codes, even if advised of the possibility of such damage. Users may use any information of the shared data at their own risk and the shared data and information are not for the purpose of being used in business, commercialization, and clinic; they have been shared just for the research purposes. Please cite the following article if you use the data in your publication: Hosseini M-P, Nazem-Zadeh M-R, Pompili D, Jafari-Khouzani K, Elisevich K, Soltanian-Zadeh H. Comparative performance evaluation of automated segmentation methods of hippocampus from magnetic resonance images of temporal lobe epilepsy patients. Medical Physics. 2016;43(1):538-553. doi:10.1118/1.4938411.
HFH_TLE_T1_Hip_Segm License4
License > Other/Proprietary License > HFH_TLE_T1_Hip_Segm License4
LICENSE: Copyright (c) 2016, Henry Ford Hospital – Image Analysis Laboratory All rights reserved. Redistribution and use of the source codes with or without modification, are permitted provided that the following conditions are met: * Redistributions of the shared data and the source codes must retain the above copyright notice, this list of conditions and the following disclaimer. * Redistributions in the binary form of the shared code must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution DISCLAIMER: The shared data, the clinical information and MATLAB source codes are provided by the copyright holders and contributors "as is" and any express or implied warranties, including, but not limited to, the implied warranties of merchantability and fitness for a particular purpose are disclaimed. In no event shall the copyright owner or contributors be liable for any direct, indirect, incidental, special, exemplary, or consequential damages (including, but not limited to, procurement of substitute goods or services; loss of use, data, or profits; or business interruption) however caused and on any theory of liability, whether in contract, strict liability, or tort (including negligence or otherwise) arising in any way out of the use of the shared data and source codes, even if advised of the possibility of such damage. Users may use any information of the shared data at their own risk and the shared data and information are not for the purpose of being used in business, commercialization, and clinic; they have been shared just for the research purposes. Please cite the following article if you use the data in your publication: Jafari-Khouzani K, Elisevich K, Karvelis KC, Soltanian-Zadeh H. QUANTITATIVE MULTI-COMPARTMENTAL SPECT IMAGE ANALYSIS FOR LATERALIZATION OF TEMPORAL LOBE EPILEPSY. Epilepsy research. 2011;95(1-2):35-50. doi:10.1016/j.eplepsyres.2011.02.011.
High Pass
Category > Software > Application > Spatial Transformation > Frequency Domain > Filtering > High Pass
Software application that performs image spatial transformation using the frequency domain technique of 'High Pass' filtering.
HI-SPEED Software Packets License
License > Other/Proprietary License > HI-SPEED Software Packets License
------------------------------------------------------------------------------------------------------------ HIGHLY SPECIFIC BUT EDGILY EFFECTIVE DATA-PROCESSING (HI-SPEED) SOFTWARE PACKETS. HI-SPEED currently contains packets on (1) Nonlinear least squares (NLS) & constrained NLS (CNLS) estimations of the diffusion tensor, (2) Error propagation via diffusion tensor representations, and the elliptical cone of uncertainty and its normalized measures for diffusion tensor imaging (DTI), (3) Analytical two- and three- dimensional MRI (Shepp-Logan) phantom in both the Fourier and image domains, (4) Probabilistic identification and estimation of noise (PIESNO) in MRI, and (5) MR signal and noise analysis. ----------------------------------------------------------------------------------------------------------- NON-PROPRIETARY SOFTWARE TRANSFER AGREEMENT Provider: Section on Tissue Biophysics and Biomemetics (STBB), National Institute of Child Health and Human Development (NICHD), National Institutes of Health Definition: The term “Software” throughout this agreement means the codes/programs which run the above mentioned packets. By accepting Software, Recipient agrees to the terms of this Agreement. The Software transferred under this agreement was created by Federal Government employees in the course of official duties. Transfer of Software to Recipient does not constitute endorsement by the Provider of the Recipient or any product, service or company and no endorsement should be inferred. SOFTWARE IS NOT INTENDED FOR TREATING OR DIAGNOSING HUMAN SUBJECTS. Software is supplied AS IS, without any accompanying services or improvements from NIH. SOFTWARE IS SUPPLIED TO RECIPIENT WITH NO WARRANTIES, EXPRESS OR IMPLIED, INCLUDING ANY WARRANTY OR MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE. Provider makes no representations that the use of Software will not infringe any patent or proprietary rights of third parties. All risk as to quality and performance of Software is with Recipient. In no event will the United States Government or Provider be liable to Recipient for damages arising out of the use or inability to use Software, including but not limited to loss of data or data being rendered in accurate or losses sustained by Recipient or third parties. Recipient will send to Provider general reports regarding the application of the Software and the effectiveness and problems encountered in using the Software, without disclosing Recipient’s confidential information. Information from general reports may be used by the Provider to enhance the capabilities of the Software. Reports can be forwarded to the Provider at the following address: guankoac@mail.nih.gov or cgkoay@uwalumni.com.
Holoprosencephaly
Diagnosis > Holoprosencephaly
Resource is related to or associated with application to Holoprosencephaly. Holoprosencephaly is a disorder caused by the failure of the prosencephalon (the embryonic forebrain) to sufficiently divide into the double lobes of the cerebral hemispheres. See also http://www.ninds.nih.gov/disorders/holoprosencephaly/holoprosencephaly.htm MESH_UID: D016142
HP-UX
Operating System > POSIX/UNIX-like > HP-UX
HP-UX operating system.
Huntington Disease
Diagnosis > Huntington Disease
Resource is related to or associated with application to Huntington's Disease. Huntington's disease (HD) results from genetically programmed degeneration of brain cells, called neurons, in certain areas of the brain. See also http://www.ninds.nih.gov/disorders/huntington/huntington.htm MESH_UID: D006816
Hydrocephalus
Diagnosis > Hydrocephalus
Resource is related to or associated with application to Hydrocephalus. Hydrocephalus is a condition in which the primary characteristic is excessive accumulation of fluid in the brain. See also http://www.ninds.nih.gov/disorders/hydrocephalus/hydrocephalus.htm MESH_UID: D006849
Hypertension
Diagnosis > Hypertension
Resource is related to or associated with application to High blood pressure. Blood pressure readings are usually given as two numbers -- for example, 120 over 80 (written as 120/80 mmHg). One or both of these numbers can be too high.The top number is called the systolic blood pressure. The bottom number is called the diastolic blood pressure. If you have heart or kidney problems, or you had a stroke, your doctor may want your blood pressure to be even lower than that of people who do not have these conditions. You are more likely to be told your blood pressure is too high as you get older. This is because your blood vessels become stiffer as you age. When that happens, your blood pressure goes up. High blood pressure increases your chance of having a stroke, heart attack, heart failure, kidney disease, and early death. Most of the time, no cause of high blood pressure is found. This is called essential hypertension. High blood pressure that is caused by another medical condition or medication is called secondary hypertension. See also http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0001502/ MESH_UID: D006973
iBEAT
License > Other/Proprietary License > iBEAT
iBEAT Software Copyright (C) 2011 IDEA Group, Biomedical Research Imaging Center, University of North Carolina at Chapel Hill. All rights reserved. Correspondence: dinggang_shen@med.unc.edu Web: www.med.unc.edu/bric/ideagroup iBEAT is a free software. Permission to use, copy and distribute the software is granted, provided that this licence appears in all copies. iBEAT is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. iBEAT CAN NOT be used for commercial purposes. iBEAT SHOULD NOT be used for medical purposes. The authors WILL NOT be responsible for using iBEAT in medical conditions.
iBrain™ Licence
License > Other/Proprietary License > iBrain™ Licence
The iBrain™ licence is a non-exclusive licence available upon request that permits use for non-commercial research or academic purposes.
IDEA License
License > Other/Proprietary License > IDEA License
The atlases are distributed free for non-commercial research purposes, but ownership, copyright, and all rights are retained by IDEA lab, Department of Radiology and BRIC, UNC-Chapel Hill.
IIT Human Brain Atlas License
License > Other/Proprietary License > IIT Human Brain Atlas License
IIT hereby grants a license to use, including the right to share, copy, distribute, and transmit, the information, images and data that appears on this webpage solely for non-commercial educational and research purposes, subject to the following restrictions: (1) You must at all times acknowledge and attribute ownership of the information, images and data to IIT, including reproducing IIT's copyright to the extent that the same appears thereon (but not in any way that suggests that IIT endorses you or your use of the work); If you use components of the IIT Human Brain Atlas, reference our related publications. (2) You may not alter, transform, adapt or build upon the information, images or data; and (3) You may not post the information, images and data on any website, electronic bulletin board or any other electronic medium without the express written permission of IIT. As the information, images and data is experimental in nature and is being provided solely to facilitate medical, academic and scientific research, you agree that you will use this information, images and data at your own risk and without recourse or liability of any kind to IIT.  IIT MAKES NO REPRESENTATIONS AND EXTENDS NO WARRANTIES OF ANY KIND, EITHER EXPRESSED OR IMPLIED WITH RESPECT TO THE INFORMATION, IMAGES AND DATA, AND THERE ARE NO EXPRESS OR IMPLIED WARRANTIES OF MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE. Use of the information, images or data for any commercial purposes is strictly prohibited without the express written consent of IIT.
IIT Human Brain Template License
License > Other/Proprietary License > IIT Human Brain Template License
IIT hereby grants a license to use, including the right to share, copy, distribute, and transmit, the information, images and data that appears on this webpage solely for non-commercial educational and research purposes, subject to the following restrictions: (1) You must at all times acknowledge and attribute ownership of the information, images and data to IIT, including reproducing IIT's copyright to the extent that the same appears thereon (but not in any way that suggests that IIT endorses you or your use of the work); For publications using the IIT template use reference: “Peng H, Orlichenko A, Dawe RJ, Agam G, Zhang S, Arfanakis K. Development of a human brain diffusion tensor template. Neuroimage 2009;46:967-98”; For publications using the IIT2 template use reference: “Zhang S, Peng H, Dawe RJ, Arfanakis K. Enhanced ICBM diffusion tensor template of the human brain. NeuroImage 2011;54:974–984”; (2) You may not alter, transform, adapt or build upon the information, images or data; and (3) You may not post the information, images and data on any website, electronic bulletin board or any other electronic medium without the express written permission of IIT. As the information, images and data is experimental in nature and is being provided solely to facilitate medical, academic and scientific research, you agree that you will use this information, images and data at your own risk and without recourse or liability of any kind to IIT. IIT MAKES NO REPRESENTATIONS AND EXTENDS NO WARRANTIES OF ANY KIND, EITHER EXPRESSED OR IMPLIED WITH RESPECT TO THE INFORMATION, IMAGES AND DATA, AND THERE ARE NO EXPRESS OR IMPLIED WARRANTIES OF MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE. Use of the information, images or data for any commercial purposes is strictly prohibited without the express written consent of IIT.
Image Display
Category > Software > Application > Visualization > Image Display
Software application visualization using 'Image Display'.
Image Display has the following sub-entries: Clipping, Three Dimensional Display, and Two Dimensional Display.
Image Reconstruction
Category > Software > Application > Image Reconstruction
Software application involved in 'image reconstruction', the generation of interpretable image results from a raw acquisition of spatially resolved data. NeuroLexID: birnlex_2186
Image Reconstruction has one sub-entry: Tomography.
Image-to-Image
Category > Software > Application > Spatial Transformation > Registration > Image-to-Image
Software application that performs image registration using 'Image-to-Image' matching techniques.
Image-to-Image has the following sub-entries: Intermodal, Intersubject, Intramodal, and Intrasubject.
Image-to-Template
Category > Software > Application > Spatial Transformation > Registration > Image-to-Template
Software application that performs image registration using 'Image-to-Template' matching techniques.
Image-to-Template has two sub-entries: MNI305 and Talairach.
Imaging Genomics
Domain > Imaging Genomics
Resources that cover the domains of imaging related to genetics and genomics. Imaging genomics refers to the use of anatomical or physiological imaging technologies as phenotypic assays to evaluate genetic variation or perform genomic study.
Imputation
Category > Software > Application > Genomic Analysis > SNP's & Genes > Imputation
Software related to genetic imputation. In statistics, imputation is the substitution of some value for missing data. See http://en.wikipedia.org/wiki/Imputation_%28statistics%29
Independent Component Analysis
Category > Software > Application > Statistical Operation > Independent Component Analysis
Software application that performs the statistical operation of 'Independent Component Analysis'.
Information Resource
Category > Information Resource
Sources of information. Information can be data, data representations (i.e. models) and knowledge. This information can be delivered to the observer through a variety of mechanisms. Information (data, knowledge, etc.) are distinct from the 'operators' (i.e. software tools) that process, transform, summarize or otherwise consume information. NeuroLexID: birnlex_11001
Information Specification
Category > Information Resource > Information Specification
Generalized methods and resources for specifying information.
Information Specification has the following sub-entries: File Format, Ontology, and Schema.
Information Theory
Category > Software > Application > Information Theory
A software application that performs information theoretic operations.
INSTAR
License > Other/Proprietary License > INSTAR
This software is distributed without any warranty; without even the implied warranty of merchantability or fitness for a particular purpose.
Intended Audience
The main class of people likely to be interested in this resource.
Intended Audience has the following sub-entries: Developers, End Users, Other Audience, and System Administrators.
Intensity Contour
Category > Software > Application > Segmentation > Intensity Contour
Segmentation by means of 'Intensity Contour' techniques.
Intensity Integral
Category > Software > Application > Spatial Transformation > Intensity Operations > Intensity Integral
Software application that performs image spatial transformation using 'Intensity Integral'.
Intensity Non-uniformity Correction
Category > Software > Application > Spatial Transformation > Intensity Operations > Intensity Non-uniformity Correction
Software application that performs image spatial transformation using 'Intensity Non-uniformity Correction'.
Intensity Operations
Category > Software > Application > Spatial Transformation > Intensity Operations
Software application that performs image spatial transformation by way of 'Intensity Operations'.
Intensity Operations has two sub-entries: Intensity Integral and Intensity Non-uniformity Correction.
Interactomics
Category > Software > Application > Genomic Analysis > Other Omics > Interactomics
Software that relates to extraction of information about between-protein interactions. Interactomics is a discipline at the intersection of bioinformatics and biology that deals with studying both the interactions and the consequences of those interactions between and among proteins, and other molecules within a cell. See http://en.wikipedia.org/wiki/Interactomics
Interfile
Supported Data Format > Interfile
(Description from http://www.colin-studholme.net/software/rview/rvmanual) The Interfile image format has been used for many years to transfer mainly nuclear medicine images between different image processing and viewing programs. Because of the many different ways of acquiring and reconstructing nuclear medicine image data the format can be quite varied. Rview currently supports a subset of data formats which are loaded by specifying the ascii header file. It is assumed that the raw pixel data is stored in the same directory with an extension '.IMG'. The ascii header must contain valid values for the items 'matrix size' , 'total number of images', 'scaling factor', ' centre-centre slice separation'. The item 'number of reference frame' is used to skip any 3D non-volume image data. Using these the following volume information is extracted: Number of Pixels and Slices Voxel Dimensions derived from slice thickness/separation/FOV etc. Signed and Unsigned 16 and 8 bit data values. Max and Min Data Values Calculated from Data Values WARNINGS: If scaling factor', is not present then pixel dimensions are assumed to be 1.0mm. If 'centre-centre slice separation'. is not present then slice separation is set to slice thickness. Slice orientation is currently assumed to be TRANSAXIAL.
Intermodal
Category > Software > Application > Spatial Transformation > Registration > Image-to-Image > Intermodal
Software application that performs image registration using Image-to-Image matching with 'Intermodal' data.
Intersection
Category > Software > Application > Quantification > Overlap Metrics > Intersection
Software application for the quantification of the overlap metric of 'Intersection'.
Intersubject
Category > Software > Application > Spatial Transformation > Registration > Image-to-Image > Intersubject
Software application that performs image registration using Image-to-Image matching with 'Intersubject' data.
Intramodal
Category > Software > Application > Spatial Transformation > Registration > Image-to-Image > Intramodal
Software application that performs image registration using Image-to-Image matching with 'Intramodal' data.
Intrasubject
Category > Software > Application > Spatial Transformation > Registration > Image-to-Image > Intrasubject
Software application that performs image registration using Image-to-Image matching with 'Intrasubject' data.
IOWA3 Copywrite Notice
License > Other/Proprietary License > IOWA3 Copywrite Notice
Copyright © 2005, Thomas Grabowski MD, Lizann Bolinger PhD, Randall Frank All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: * Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. * Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. * Neither the name of the University of Iowa nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS “AS IS” AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
IRIX
Operating System > POSIX/UNIX-like > IRIX
IRIX operating system.
Japanese
Natural Language > Japanese
Japanese
Java
Programming Language > Java
An object-oriented programming language that is simpler than C++: http://java.sun.com/
Java Image Science Toolkit
Pipelines and Workflows Supported > Java Image Science Toolkit
The Java Image Science Toolkit: http://www.nitrc.org/projects/jist/
JavaScript
Programming Language > JavaScript
Java Scripting Language
Journal
Category > Information Resource > Bibliographic Resource > Journal
A resource representing a journal, as a edited, peer-reviewed, published provider of papers and/or manuscripts. May be released in hardcopy and/or electronic format.
KDE
Environment > X11 Applications > KDE
Programs designed to run in a KDE environment.
Kepler
Pipelines and Workflows Supported > Kepler
The Kepler project for scientific workflows: http://kepler-project.org/
Kinetic Measurement
Category > Software > Application > Temporal Transformation > Kinetic Measurement
Software application that performs temporal transformation for 'Kinetic Measurements'.
KMeans
Category > Software > Application > Segmentation > KMeans
Segmentation by means of 'KMeans' techniques.
Knowledge Environment
Category > Information Resource > Knowledge Environment
An information resource that captures and manages 'knowledge', generally. Knowledge can be represented by personnel and/or group synthesis of information and expressed in written or visual form. From en.wikipedia.org/wiki/Knowledge environment, "In the broadest sense knowledge environments may be defined as social, technological and physical arrangements intended to facilitate collaborative knowledge building, decision making, inference or discovery, depending on the epistemological premises and goals."
Knowledge Environment has two sub-entries: Community and Other KE.
KTrans
Category > Software > Application > Segmentation > KTrans
Segmentation by means of 'KTrans' techniques.
Labeling
Category > Software > Application > Segmentation > Region of Interest > Labeling
Software application for application of specific 'Labeling' to Rgions of interest.
Labeling has one sub-entry: Anatomic.
Landau-Kleffner Syndrome
Diagnosis > Landau-Kleffner Syndrome
Resource is related to or associated with application to Landau-Kleffner Syndrome. Landau-Kleffner syndrome (LKS) is a rare, childhood neurological disorder characterized by the sudden or gradual development of aphasia (the inability to understand or express language) and an abnormal electro-encephalogram (EEG). See also http://www.ninds.nih.gov/disorders/landaukleffnersyndrome/landaukleffnersyndrome.htm MESH_UID: D018887
LIBRA license
License > Other/Proprietary License > LIBRA license
LIBRA Software Copyright (C) 2011 IDEA Group, Biomedical Research Imaging Center, University of North Carolina at Chapel Hill. All rights reserved. Correspondence: dinggang_shen@med.unc.edu Web: www.med.unc.edu/bric/ideagroup LIBRA is a free software. Permission to use, copy and distribute the software is granted, provided that this licence appears in all copies. LIBRA is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. LIBRA CAN NOT be used for commercial purposes. LIBRA SHOULD NOT be used for medical purposes. The authors WILL NOT be responsible for using LIBRA in medical conditions.
License
License terms under which the tool or resource is distributed.
Linear
Category > Software > Application > Statistical Operation > Regression > Linear
Software application that performs the statistical operation of 'Linear' regression.
Linear Warp
Category > Software > Application > Spatial Transformation > Warping > Linear Warp
Software application that performs image warping using 'Linear Warp' technique.
Linux
Operating System > POSIX/UNIX-like > Linux
Any version of Linux.
Lisp
Programming Language > Lisp
A computer language named for the term LISt Programming language.
LONI Pipeline
Pipelines and Workflows Supported > LONI Pipeline
The LONI Pipeline: http://cms.loni.ucla.edu/pipeline/
LONI Software License
License > Other/Proprietary License > LONI Software License
LONI Software License, Version 2, © 2007 Terms and Conditions of Use: By registering for downloads from the UCLA Laboratory of Neuro Imaging, you are agreeing to the following terms and conditions as well as to the Terms of Use of the LONI website. View the LONI website’s Terms of Use (http://www.loni.ucla.edu/Common/TermsOfUse.pdf). 1. Permission is granted to use this software without charge for non-commercial research purposes only. 2. Other than the rights granted herein, LONI retains all rights, title, and interest in Technology, and You retain all rights, title, and interest in Your Modifications and associated specifications, subject to the terms of this License. 3. You may make verbatim copies of this software for personal use, or for use within your organization, provided that you duplicate all of the original copyright notices and associated disclaimers. If you provide the use of the software to other users within your organization, they also must comply with all the terms of this Software Distribution Agreement. 4. YOU MAY NOT DISTRIBUTE COPIES of this software, or copies of software derived from this software, to others outside your organization without specific prior written permission from the UCLA Laboratory of Neuro Imaging, except where noted for specific software products. 5. You must not remove or alter any copyright or other proprietary notices in the software. Software has not been reviewed or approved by the Food and Drug Administration, and is for non-clinical, IRB-approved Research Use Only. In no event shall data or images generated through the use of the Software be used in the provision of patient care. 6. THE SOFTWARE IS PROVIDED "AS IS," AND THE UNIVERSITY OF CALIFORNIA AND ITS COLLABORATORS DO NOT MAKE ANY WARRANTY, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE, NOR DO THEY ASSUME ANY LIABILITY OR RESPONSIBILITY FOR THE USE OF THIS SOFTWARE. 7. This software is for research purposes only and has not been approved for clinical use. 8. You may publish papers and books using results produced using software provided by this site provided that you reference the appropriate citations. A list of citations is available at http://www.loni.ucla.edu/Common/Funding.jsp. 9. You agree to comply with LONI's Trademark Usage Requirements, as modified from time to time, described in the “Use of Materials Limitations” section of the LONI Terms of Use Agreement. Except as expressly provided in this License, you are granted no rights in or to any LONI trademarks now or hereafter used or licensed by LONI. 10. All Technology and technical data delivered under this Agreement are subject to US export control laws and may be subject to export or import regulations in other countries. You agree to comply strictly with all such laws and regulations and acknowledge that you have the responsibility to obtain such licenses to export, re-export, or import as may be required after delivery to you.
LONI/SVE Terms of Use
License > Other/Proprietary License > LONI/SVE Terms of Use
The terms of use for the SVE can be found here: http://sve.loni.ucla.edu/instructions/terms-of-use/ Terms of Use General terms. 1. Use of this website is governed by the Laboratory of Neuro Imaging’s terms of use, which can be found here (http://www.loni.ucla.edu/Common/TermsOfUse.pdf). 2. Privacy. The Segmentation Validation Engine site requires that you register for an account with the Laboratory of Neuro Imaging’s primary site. As part of this registration, an email is required. This email serves as your password, and is stored on our servers. Uploading data to our servers requires that you establish a screen name that will be associated with your data and will be seen by other visitors to this site. 3. Data. The test data provided by this site have been anonymized. Data that are uploaded by users of this site for testing will be archived on our servers, along with derived measures of segmentation quality. These results and data will be made available to other visitors to this site. By using the upload facility, you agree to allow this sharing of data. 4. Usage policy. You are allowed to use the results produced by this site in your research, provided that you cite it appropriately. This website and the following paper should be cited: Shattuck DW, Prasad G, Mirza M, Narr KL, and Toga AW (in press) Online Resource for Validation of Brain Segmentation Algorithms, NeuroImage doi:10.1016/j.neuroimage.2008.10.066.
Low Pass
Category > Software > Application > Spatial Transformation > Frequency Domain > Filtering > Low Pass
Software application that performs image spatial transformation using the frequency domain technique of 'Low Pass' filtering.
Lymphoma, Non-Hodgkin
Diagnosis > Lymphoma, Non-Hodgkin
Resource is related to or associated with application to Non-Hodgkin lymphoma. White blood cells called lymphocytes are found in lymph tissue. They help prevent infections. Most lymphomas start in a type of white blood cell called B lymphocyte, or B cell. For most patients, the cause of NHL is unknown. But lymphomas may develop in people with weakened immune systems, including persons who have had an organ transplant or persons with HIV infection. NHL most often affects adults. Men get NHL more often than women. Children can get some forms of lymphoma. There are many types of NHL. Specific types are grouped according to how fast the cancer spreads. The cancer may be low grade (slow growing), intermediate grade, or high grade (fast growing). The cancer is further grouped by how the cells look under the microscope, what type of white blood cell it originates from, and whether there are certain DNA changes. See also http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0001607/ MESH_UID: D008228
M4D
Supported Data Format > MEG Formats > M4D
M4D. Neuroimaging 4-D
MacOS
Operating System > MacOS
MacOS operating system.
MagPro Medical Device License
License > Other/Proprietary License > MagPro Medical Device License
Use of MagVenture devices must be compliant with all applicable local, state and federal laws and regulations.
Manual
Category > Software > Application > Segmentation > Manual
Segmentation by means of 'Manual' techniques.
Markov Random Fields
Category > Software > Application > Modeling > Markov Random Fields
Software application to perform modeling using 'Markov Random Fields' techniques.
MASI
License > Other/Proprietary License > MASI
Medical-Image Analysis and Statistical Interpretation Lab
MATLAB
Programming Language > MATLAB
MATLAB: http://www.mathworks.com/products/matlab/
Mean Curvature
Category > Software > Application > Surface Analysis > Curvature > Mean Curvature
Software application that performs a surface analysis of 'Mean' curvature.
Mean Transit Time
Category > Software > Application > Temporal Transformation > Temporal Curve Fitting > Haemodynamic Response > Perfusion > Mean Transit Time
Software application that performs temporal curve fitting for haemodynamic characterization of perfusion 'Mean Transit Time'.
Medial Axis
Category > Software > Application > Shape Analysis > Medial Axis
Shape analysis application using 'Medial Axis' techniques.
MEG
Category > Hardware > Physiological Recording > MEG
Hardware for magnetoencephalography (MEG).
MEG Formats
Supported Data Format > MEG Formats
a collection of the MEF data file formats
MEG Formats has the following sub-entries: CTF, FIF, and M4D.
MEG Modeling
Category > Software > Application > Modeling > Forward - Inverse > MEG Modeling
Software application to perform modeling of 'Forward - Inverse' problems applied to MEG.
Mesh Generation
Category > Software > Application > Modeling > Mesh Generation
Software application to perform modeling using 'Mesh Generation' techniques.
Metabolomics
Category > Software > Application > Genomic Analysis > Other Omics > Metabolomics
Software that extracts information related to the metabolome. Metabolomics is the scientific study of chemical processes involving metabolites. See http://en.wikipedia.org/wiki/Metabolomics
MGH CSRL License
License > Other/Proprietary License > MGH CSRL License
Mass General Hospital CSRL License - free for academic and non-profit research use.
MGH/MGZ
Supported Data Format > MGH/MGZ
MGH-NMR format (original and compressed): http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/MghFormat
MIAS license
License > Other/Proprietary License > MIAS license
By downloading or using the MIA toolkit, developed by the Medical Image Analysis (MIA) Lab at Methodist, you agree the following terms and conditions: 1. The use of this software tool is granted without charge for non-commercial and research purpose only; the software was not evaluated for clinical use 2. The authors in MIA retains all rights and ownership of this software; 3. You may not remove or alter any copyright, license or other proprietary notices in the software; 4. Papers and books using the results produced by the MIA software is allowed providing appropriate citations of the publications of MIA group; 5. The software is provided as is, and non of the members of MIA lab assume any liability or responsibility for the use of this software.
Microscopy
Domain > Microscopy
Domain where the context is microscopic imaging.
Microsoft
Operating System > Microsoft
Microsoft operating systems.
Microsoft has two sub-entries: MS-DOS and Windows.
Microsoft Word Document
Supported Data Format > Microsoft Word Document
Microsoft word document format.
Migraine Disorders
Diagnosis > Headache Disorders, Primary > Migraine Disorders
Related to migraine headache. MESH_UID: D008881
MINC
Supported Data Format > MINC
Medical Imaging NetCDF (MINC) format: http://www.bic.mni.mcgill.ca/software/minc/minc1_format/
MINC2
Supported Data Format > MINC2
Medical Imaging NetCDF (MINC) 2 format: http://www.bic.mni.mcgill.ca/software/minc/minc2_format/
MINC Licence (BSD'ish)
License > Other/Proprietary License > MINC Licence (BSD'ish)
Copyright 1996, John G. Sled McConnell Brain Imaging Centre, Montreal Neurological Institute, McGill University. Permission to use, copy, modify, and distribute this software and its documentation for any purpose and without fee is hereby granted, provided that the above copyright notice appear in all copies. The author and McGill University make no representations about the suitability of this software for any purpose. It is provided "as is" without express or implied warranty.
MIRIAD Data Use Agreement
License > Other/Proprietary License > MIRIAD Data Use Agreement
By registering and downloading data from this site, users agree to the following: 1. Users shall respect restrictions of access to sensitive data. Users will not attempt to identify the individuals whose images are included in the data set 2. Redistribution of these data to third parties is not permitted without prior agreement. 3. Whilst every effort will be made to ensure the quality and completeness of the data, this cannot be guaranteed. Users employ these data at their own risk. 4. Users must acknowledge the use of these data and data derived from this dataset when publicly presenting any findings or algorithms that benefited from their use. Such presentations include but are not limited to papers, books, book chapters, conference posters, and talks. 5. When publishing findings that benefit from these data, users agree to: i. Reference the following publication, describing the release of the data: Malone IB, Cash D, Ridgway GR, Macmanus DG, Ourselin S, Fox NC, Schott JM. MIRIAD-Public release of a multiple time point Alzheimer's MR imaging dataset. Neuroimage. 2012 Dec 28;70C:33-36 doi:10.1016/j.neuroimage.2012.12.044. ii. Include the following statement in the acknowledgements: Data used in the preparation of this article were obtained from the MIRIAD database (http://miriad.drc.ion.ucl.ac.uk). The MIRIAD investigators did not participate in analysis or writing of this report. The MIRIAD dataset is made available through the support of the UK Alzheimer's Society (Grant RF116). The original data collection was funded through an unrestricted educational grant from GlaxoSmithKline (Grant 6GKC). iii. Send a copy of the accepted manuscript to drc-miriad@ucl.ac.uk
MIT
License > Other/Proprietary License > MIT
The MIT License (MIT) Copyright (c) 2015 Qusp Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
MIT/X Consortium License
License > BSD/MIT-Style Open Source License > MIT/X Consortium License
MIT License, also the X Consortium License, or a derivative; see: http://www.opensource.org/licenses/mit-license.php The MIT license is fairly permissive, placing few restrictions on the developer or user. As a developer, you may distribute source or binaries (with or without source code). As a tool user, you may modify and redistribute this tool or resource. If source code is distributed, a user may browse the source code to understand the tool's workings, modify the tool to better suit local needs, and may share a modified version. If source code is not distributed, a user may still redistribute the tool as part of another package. NeuroLex: birnlex_2351
Mixed: BSD and LGPL
License > Other/Proprietary License > Mixed: BSD and LGPL
No need to add a new license, however, our software consists of various parts that can all have their own license. By far most are licensed using either BSD or LGPL (see: https://www.ohloh.net/p/micro-manager/analyses/latest )
MNI305
Category > Software > Application > Spatial Transformation > Registration > Image-to-Template > MNI305
Software application that performs image registration using Image-to-Template matching with 'MNI305' template.
MOCA License
License > Other/Proprietary License > MOCA License
MOCA Software License The following terms apply to all files associated with the software unless explicitly disclaimed in individual files. 1. Permission is granted to use this software without charge for non-commercial research purposes only. You may make verbatim copies of this software for personal use, or for use within your organization, provided that you include copies of all of the original copyright notices and associated disclaimers with each copy of the software. 2. YOU MAY NOT DISTRIBUTE COPIES of this software, or copies of software derived from this software, to others outside your organization. 3. This software is for research purposes only and has not been approved for clinical use. 4. If you publish results whose generation used this software, you must provide attribution to the authors of the software by referencing the appropriate papers. 5. IN NO EVENT SHALL THE UNIVERSITY OF SOUTHERN CALIFORNIA, THE AUTHORS, OR THE DISTRIBUTORS BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT, SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS, ARISING OUT OF THE USE OF THIS SOFTWARE, ITS DOCUMENTATION, OR ANY DERIVATIVES THEREOF, EVEN IF THE AUTHORS HAVE BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. 6. THE UNIVERSITY OF SOUTHERN CALIFORNIA, THE AUTHORS, AND THE DISTRIBUTORS SPECIFICALLY DISCLAIM ANY WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, AND NON-INFRINGEMENT. THIS SOFTWARE IS PROVIDED ON AN “AS IS” BASIS, AND THE AUTHORS AND DISTRIBUTORS HAVE NO OBLIGATION TO PROVIDE MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS, OR MODIFICATIONS.
Model Generation
Category > Software > Application > Modeling > Model Generation
Software application for the generation of data models from input data.
Modeling
Category > Software > Application > Modeling
A software application that pertains to the generation, utilization and execution of data 'modeling'.
Moments of Inertia
Category > Software > Application > Quantification > Volumetric Analysis > Moments of Inertia
Software application for the quantification of the volumetric property of 'Moments of Inertia'.
Monte Carlo
Category > Software > Application > Modeling > Monte Carlo
Software application to perform modeling using 'Monte Carlo' techniques.
Morphology
Category > Software > Application > Quantification > Morphology
Software application for the quantification of 'Morphology'.
Mosaic License
License > Other/Proprietary License > Mosaic License
Remedy charges a perpetual site license and per user, as well as yearly maintenance.
Motion Analysis
Category > Software > Application > Temporal Transformation > Motion Analysis
Software application that performs temporal transformation for 'Motion Analysis'.
Mozilla Public License
License > GPL-Style Open Source > Mozilla Public License
The Mozilla licence was developed originally for the mozilla project. It differs from other projects, and more closely reflects my redistribution wishes, in the following ways. Similar to the LGPL, it allows incorporation into closed source software, but the part that is kept open source and requires redistribution to the community is based on a programming unit, usually a class, or possibly a header file. Thus it does not require arbitrary division of the program into libraries. This is particularly important in this case, as it would allow someone to attach a closed source library to this program (rather than the other way round). http://www.mozilla.org/MPL/MPL-1.1.html
MPT
License > Other/Proprietary License > MPT
Measure Projection Toolbox - Copyright ©2012 Nima Bigdely-Shamlo (SCCN, INC, UCSD). Commercial re-use of any part of this toolbox without permission is prohibited 1) You must not remove or alter any copyright or other proprietary notices in the software. 2) Permission is granted to use this software without charge for non-commercial research purposes only. 3) You may publish papers and books using results produced using software provided by this site provided that you reference these appropriate citations: Bigdely-Shamlo N., Mullen T., Kreutz-Delgado K., Makeig S., "Measure Projection Analysis: A Probabilistic Approach to EEG Independent Component Source Comparison and Multi-Subject Inference," In preparation. if you used anatomical label information provided by the toolbox, cite: Shattuck DW, Mirza M, Adisetiyo V, Hojatkashani C, Salamon G, Narr KL, Poldrack RA, Bilder RM, Toga AW, Construction of a 3D Probabilistic Atlas of Human Cortical Structures, NeuroImage (2007), doi: 10.1016/j.neuroimage.2007.09.031 4) Software has not been reviewed or approved by the Food and Drug Administration, and is for non-clinical, IRB-approved Research Use Only. In no event shall data or images generated through the use of the Software be used in the provision of patient care. 5) THE SOFTWARE IS PROVIDED "AS IS," AND THE UNIVERSITY OF CALIFORNIA AND ITS COLLABORATORS DO NOT MAKE ANY WARRANTY, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE, NOR DO THEY ASSUME ANY LIABILITY OR RESPONSIBILITY FOR THE USE OF THIS SOFTWARE. 6) This software is for research purposes only and has not been approved for clinical use.
MR
Domain > MR
Magnetic Resonance (MR, MRI, NMR, etc.). Represents projects designed to operate on with for MR-based data acquisition, processing, storage, etc.
MRBrainS license
License > Other/Proprietary License > MRBrainS license
- The downloaded data sets or any data derived from these data sets, may not be given or redistributed under any circumstances to persons not belonging to the team that registered for the MRBrainS challenge. - All information entered when registering a team, including the name of the contact person, the affiliation (institute, organization or company the team's contact person works for) and the e-mail address must be complete and correct. In other words, anonymous registration is not allowed. If you wish to submit anonymously, for example because you want to submit your results to a conference that requires anonymous submission, please contact mrbrains13@isi.uu.nl first. - Data downloaded from this website may only be used for the purpose of preparing an entry to be submitted on the MRBrainS website. The data may not be used for other purposes in scientific studies and may not be used to train or develop other algorithms, including but not limited to algorithms used in commercial products without contacting the MRBrainS organizers. - Results of your submission will only be published on the website when a document describing the method is provided. - If a commercial system is evaluated no method description is necessary, but the system has to be publicly available and the exact name and version number have to be provided. - The organizers of the challenge will check the method description before publishing the results on the website. - Evaluation of the results uploaded to this website will be made publicly available on this site (see the Results section of the MRBrainS website), and by submitting results, you grant us permission to publish our evaluation. However, participating teams maintain full ownership and rights to their algorithms. - If the results of algorithms in the MRBrainS challenge are to be used in scientific publications (journal publications, conference papers, technical reports, presentations at conferences and meetings) you must refer to the MRBrainS website (http://mrbrains13.isi.uu.nl/) and cite the following journal paper: A.M. Mendrik, K.L. Vincken, H.J. Kuijf, M. Breeuwer, W.H. Bouvy, J. de Bresser, A. Alansary, M. de Bruijne, A. Carass, A. El-Baz, A. Jogh, R. Katyal, A.R. Khan, F. van der Lijn, Q. Mahmood, R. Mukherjee, A. van Opbroek, S. Paneri, S. Pereira, M. Persson, M. Rajchl, D. Sarikayan, O. Smedby, C.A. Silva, H.A. Vrooman, S. Vyas, C. Wang, L. Zhaon, G.J. Biessels, M.A. Viergever. “MRBrainS Challenge: Online Evaluation Framework for Brain Image Segmentation in 3T MRI Scans.” Computational Intelligence and Neuroscience, special issue on Simulation and Validation in Brain Image Analysis 2015. Article ID 813696. - Teams must notify the organizers of MRBrainS13 about any publication that is (partly) based on the results on data published on this site, in order for us to maintain a list of publications associated with the challenge.
MriCloud Agreement
License > Other/Proprietary License > MriCloud Agreement
You should read and agree with the following license terms before you downloading the programs. Thank you for using this DTI toolkit. By using this toolkit, you agree to be bound by the following terms and conditions ACADEMIC AND LEGITIMATE USES ONLY All programs and files in this toolkit are made available to you for your academic research, non-commercial use only. You should provide accurate identification, contact, and other information required as part of the registration process. If you are interested in doing anything different than the foregoing, you must first obtain author's written consent. If you fail to do so, the author reserves the right to take legal action. Furthermore, you may not use this toolkit in any manner that either directly or indirectly violates any laws or proprietary rights. This includes laws and proprietary rights in the United States as well as in other countries. If you have questions on your contemplated use or if you have comments on this toolkit or ideas on how to improve it, please email hjiang@jhmi.edu INTELLECTUAL PROPERTY You agree not to remove, obscure, or alter this toolkit's copyright notice, or other proprietary rights notices affixed to or contained within programs in the toolkit. You also acknowledge that author owns all right, title and interest in and to this toolkit, including without limitation all intellectual property rights. DISCLAIMER OF WARRANTIES This toolkit is currently in beta form and has not been fully tested or debugged. Accordingly, author disclaims any responsibility for any harm resulting from your use of this toolkit. This toolkit is provided "as is," with no warranties whatsoever. You understand and agree that you use this toolkit at your own discretion and risk and that you will be solely responsible for any damages to your computer system or loss of data that results from the download or use of programs The service is being provided free of charge. Accordingly, you agree that author shall have no liability arising from or based on your use of the programs. TERM AND TERMINATION If you wish to terminate this Agreement, you may simply cease using the programs in this toolkit. In such a case, you must delete any programs and files that you may have obtained from this web-site. Author may terminate this Agreement (and your account) at any time, with or without cause.
MS-DOS
Operating System > Microsoft > MS-DOS
Microsoft Disk Operating System (DOS)
Multi-Neuron Modeling
Category > Software > Application > Modeling > Neuronal Modeling > Multi-Neuron Modeling
A resource that is related to software for neuronal modeling of multiple neuron systems.
Multiple Sclerosis
Diagnosis > Multiple Sclerosis
Resource is related to or associated with application to Multiple Sclerosis. An unpredictable disease of the central nervous system, multiple sclerosis (MS) can range from relatively benign to somewhat disabling to devastating, as communication between the brain and other parts of the body is disrupted. See also http://www.ninds.nih.gov/disorders/multiple_sclerosis/multiple_sclerosis.htm MESH_UID: D009103
Multivariate Analysis
Category > Software > Application > Statistical Operation > Multivariate Analysis
Software application that performs time domain analysis using 'Multivariate Analysis' techniques.
Muscular Dystrophies
Diagnosis > Muscular Dystrophies
Resource is related to or associated with application to Muscular Dystrophy. The muscular dystrophies (MD) are a group of more than 30 genetic diseases characterized by progressive weakness and degenerationof the skeletal muscles that control movement. See also http://www.ninds.nih.gov/disorders/md/md.htm MESH_UID: D009136
Natural Language
The oral/written language for the development and use of this software.
Natural Language has the following sub-entries: Danish, English, French, German, Japanese, Russian, and Spanish.
NC-ICT Fast Imaging Library Contribution and Software License
License > Other/Proprietary License > NC-ICT Fast Imaging Library Contribution and Software License
The License is modeled and similar to after the 3D Slicer License.
Nearest Neighbor
Category > Software > Application > Spatial Transformation > Resampling > Nearest Neighbor
Software application that performs image resampling using 'Nearest Neighbor' interpolation.
NEMO License
License > Other/Proprietary License > NEMO License
NEMO License Version 1.0, May 2009 This license is between the user (you) and the copyright holders. The license granted in this Agreement includes without limitation the right to (i) incorporate the software into other proprietary programs (subject to any restrictions applicable to such programs), (ii) add your own copyright statement to your modifications of the software, and (iii) provide additional or different license terms and conditions in your sublicenses of modifications of the software; provided that your use, reproduction and distribution of such modifications otherwise complies with the conditions stated in this Agreement. 1. Redistribution and use, with or without modification, must retain the author’s(s’) copyright notice(s) as documented in the source code. Redistributions in binary code must reproduce the author’s(s’) copyright notice(s) as documented in the source code. This list of conditions, the disclaimer in the documentation and/or other materials provided with the distribution must also be retained or reproduced. 2. None of the names, logos, or trademarks of NEMO, any Licensor or any of Licensor's affiliates or any of the Contributors may be used to endorse or promote products produced in whole or in part by operation of the software or derived from or based on the software without specific prior written permission from the applicable party. 3. The acknowledgment “This product includes [Insert name of Software]” shall apply to all copies of complete or substantial portions of the software, including without limitation all source and executable forms, and on any user documentation. 4. The software has been designed for research purposes only and has not been approved for clinical use. It has not been reviewed or approved by the Food and Drug Administration or by any other agency. You acknowledge and agree that clinical applications are neither recommended nor advised. 5. You are responsible for purchasing any external software that may be required for the proper running of this software. You also agree that you are solely responsible for informing your sublicensees, including without limitation your end-users, of their obligations to secure any such required permissions. You further agree that you are solely responsible for determining and divulging the viral nature of any code included in the software. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESSED OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE, AND NON-INFRINGEMENT, ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNERS OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. Any use, reproduction or distribution of the Software which is not in accordance with this Agreement shall automatically revoke all rights granted to you under this Agreement and render this Agreement null and void. This Agreement does not grant any rights in or to any intellectual property owned by Licensor or any Contributor except those rights expressly granted hereunder.
NetBSD
Operating System > POSIX/UNIX-like > BSD > NetBSD
NetBSD operating system.
Neural Network
Category > Software > Application > Segmentation > Neural Network
Segmentation by means of 'Neural Network' techniques.
Neurofibromatosis 1
Diagnosis > Neurofibromatosis 1
Resource is related to or associated with application to Neurofibromatosis, Type 1. The neurofibromatoses are genetic disorders that cause tumors to grow in the nervous system. See also http://www.ninds.nih.gov/disorders/neurofibromatosis/neurofibromatosis.htm MESH_UID: D017253
Neuromorphological Data
Category > Information Resource > Data Resource > Neuromorphological Data
A data resource that supplies neuromorphological data.
Neuronal Characterization
Category > Software > Application > Neuronal Characterization
Software application for the quantification of 'Neuronal Characteristics'.
Neuronal Characterization has the following sub-entries: Arborization, Dendrite Analysis, and Neuronal Tracing.
Neuronal Modeling
Category > Software > Application > Modeling > Neuronal Modeling
A resource that is related to software for neuronal modeling.
Neuronal Modeling has two sub-entries: Multi-Neuron Modeling and Single Neuron Modeling.
Neuronal Tracing
Category > Software > Application > Neuronal Characterization > Neuronal Tracing
Software for performing neuronal tracing.
NeuronJ License
License > Other/Proprietary License > NeuronJ License
Permission to use this software and corresponding documentation for educational, research, and not-for-profit purposes, without a fee and without a signed licensing agreement, is granted, subject to the following terms and conditions. It is not allowed to redistribute, sell, or lease this software, or derivative works thereof, without permission in writing from the copyright holder. The copyright holder is free to make versions of the software available for a fee or commercially only. In no event shall the copyright holder be liable to any party for direct, indirect, special, incidental, or consequential damages, of any kind whatsoever, arising out of the use of this software and its documentation, even if advised of the possibility thereof. The copyright holder specifically disclaims any warranties, including, but not limited to, the express or implied warranties of merchantability and fitness for a particular purpose. The software and corresponding documentation is provided "as is". The copyright holder has no obligation to provide maintenance, support, updates, enhancements, or modifications.
neuroVIISAS
License > Other/Proprietary License > neuroVIISAS
Permission to use this software and corresponding documentation for educational, research, and not-for-profit purposes, without a fee and without a signed licensing agreement, is granted, subject to the following terms and conditions. It is not allowed to redistribute, sell, or lease this software, or derivative works thereof, without permission in writing from the copyright holder. The copyright holder is free to make versions of the software available for a fee or commercially only. In no event shall the copyright holder be liable to any party for direct, indirect, special, incidental, or consequential damages, of any kind whatsoever, arising out of the use of this software and its documentation, even if advised of the possibility thereof. The copyright holder specifically disclaims any warranties, including, but not limited to, the express or implied warranties of merchantability and fitness for a particular purpose. The software and corresponding documentation is provided "as is". The copyright holder has no obligation to provide maintenance, support, updates, enhancements, or modifications.
Newt
Environment > Console (Text Based) > Newt
A programming library to display colored text and widget-based user interfaces.
Next Generation Sequencing
Category > Software > Application > Genomic Analysis > Next Generation Sequencing
Software that deals with extraction of information about high-density genetic sequencing. Next Generation Sequencing (NGS) is a term that has come to mean post-Sanger sequencing methods. It has become shorthand for large amounts of data (orders of magnitude more) being generated at incredibly low cost (again, orders of magnitude). See http://answers.yahoo.com/question/index?qid=20111206134058AAmlHI8
NIDAG
License > Other/Proprietary License > NIDAG
Neuroimaging Data Access Group
NIfTI-1
Supported Data Format > NIfTI-1
Single- or dual-file NIfTI-1: http://nifti.nimh.nih.gov/nifti-1
NIH Data Access Policy
License > Other/Proprietary License > NIH Data Access Policy
1. Complete the Data Access Request (includes Data Use Certification). This must be signed by the PI and Authorized Representative. 2. Scan and save the signed Data Access Request (PDF) document. 3. Complete the Simplified SF-424 (R&R) 4. Scan and save the Simplified SF-424(R&R) (PDF) document. 5. Log in to FITBIR. 6. Click on the Profile link in the upper right corner of FITBIR main landing page 7. Once directed to the Profile Details, click the [+] next to Request Additional Privileges Note: See FITBIR Standard Operating Procedure for further details. 8. Select the Query Tool under the High-Level Privileges. 9. Under Administrative Files, select from the File Type drop down- Data Access Request 10. Browse and select the signed, PDF of the Data Use Certification (part of the Data Access Request Document). 11. Click the Upload button. 12. Under Administrative Files, select from the File Type drop down- SF-424 (R&R) 13. Browse and select the signed, PDF of the SF-424 (R&R) 14. Click the Upload button. Once completed, the request package is then sent for adjudication to the Data Access and Quality Committee (DAQ) established to oversee access to the FITBIR shared data. When the investigator's request is approved, the investigator is notified by e-mail and explained the conditions under which the approval is granted. Approvals are granted for one year. If the investigator publishes any new results based on analyses using FITBIR data and tools, he/she is required to acknowledge both the original author/submitter of the data and FITBIR by defining and sharing a FITBIR Meta-Study. The FITBIR Meta-Study will be used in evaluating requests for continued access to FITBIR in future years. Investigators who access data are also strongly encouraged to collaborate on data analysis and publications with the PIs who collected the data.
NiPyPe
Pipelines and Workflows Supported > NiPyPe
NiPyPe: http://nipy.sourceforge.net/nipype/
NIRS/FNIR
Category > Hardware > Physiological Recording > Optical Imaging > NIRS/FNIR
Hardware for near infrared spectroscopy (NIRS) or functional near infrared (FNIR) data acquisition.
No Input/Output (Daemon)
Environment > No Input/Output (Daemon)
This program has no input or output, but is intended to run in the background as a daemon.
Non-Commercial Software License Agreement
License > Other/Proprietary License > Non-Commercial Software License Agreement
SOFTWARE LICENSE AGREEMENT By using the software, you are consenting to be bound by this agreement. If you do not agree to all of the terms of this agreement, exit now and uninstall the software. This Software License Agreement ("Agreement") is made and effective by and between Jon Freeman ("Developer") and you ("Licensee"). Developer has developed and licenses to users its software program under the name MouseTracker (the "Software"). Licensee desires to utilize a copy of the Software. Now, therefore, Developer and Licensee agree as follows: 1. Developer hereby grants to Licensee a perpetual, non-exclusive, limited license to use the Software as set forth in this Agreement. 2. Licensee commits to cite this software in reports and publications, if used: Freeman, J.B. & Ambady, N. (2010). MouseTracker: Software for studying real-time mental processing using a computer mouse-tracking method. Behavior Research Methods, 42, 226-241. 3. Licensee shall not modify, copy, duplicate, reproduce, license or sublicense the Software, or transfer or convey the Software or any right in the Software to anyone. Licensee is free to install and use the software on multiple computers. 4. Developer assumes no responsibility for errors or omissions in the results and interpretations following from application of the Software. Developer shall not be responsible for, and shall not pay, any amount of incidental, consequential or other indirect damages, whether based on lost revenue or otherwise, regardless of whether Developer was advised of the possibility of such losses in advance. 5. Developer specifically disclaims any warranties, including, but not limited to, the implied warranties of merchantability and fitness for a particular purpose and any statutory warranty of non-infringement. The software provided hereunder is on an "as is" basis, and Developer has no obligations to provide maintenance, support, updates, enhancements, or modifications. 6. Any notice required by this Agreement or given in connection with it, shall be in writing and shall be given to the appropriate party by personal delivery or by certified mail, postage prepaid, or recognized overnight delivery services. 7. This Agreement terminates and supersedes all prior understandings or agreements on the subject matter hereof. This Agreement may be modified only by a further writing that is duly executed by both parties. 8. If any term of this Agreement is held by a court of competent jurisdiction to be invalid or unenforceable, then this Agreement, including all of the remaining terms, will remain in full force and effect as if such invalid or unenforceable term had never been included.
Nonlinear
Category > Software > Application > Statistical Operation > Regression > Nonlinear
Software application that performs the statistical operation of 'Nonlinear' regression.
Nonlinear Warp
Category > Software > Application > Spatial Transformation > Warping > Nonlinear Warp
Software application that performs image warping using 'Nonlinear Warp' technique.
Northwestern University Schizophrenia Data and Software Tool (NUSDAST)
License > Other/Proprietary License > Northwestern University Schizophrenia Data and Software Tool (NUSDAST)
http://niacal.northwestern.edu/nusdast_accessors/new
not applicable?
License > Other/Proprietary License > not applicable?
not applicable?
NRG License
License > Other/Proprietary License > NRG License
Copyright 2009 Washginton University http://nrg.wustl.edu This license is between the user (you) and the copyright holders. The license granted in this Agreement includes without limitation the right to (i) incorporate the software into other proprietary programs (subject to any restrictions applicable to such programs), (ii) add your own copyright statement to your modifications of the software, and (iii) provide additional or different license terms and conditions in your sublicenses of modifications of the software; provided that your use, reproduction and distribution of such modifications otherwise complies with the conditions stated in this Agreement. 1) Redistribution and use, with or without modification, must retain the author's(s') copyright notice(s) as documented in the source code. Redistributions in binary code must reproduce the author's(s') copyright notice(s) as documented in the source code. This list of conditions, the disclaimer in the documentation and/or other materials provided with the distribution must also be retained or reproduced. 2) None of the names, logos, or trademarks of Washington University, any Licensor or any of Licensor's affiliates or any of the Contributors may be used to endorse or promote products produced in whole or in part by operation of the software or derived from or based on the software without specific prior written permission from the applicable party. 3) The acknowledgment "This product includes NRG software, developed by the Neuroinformatics Research Group at Washington University School of Medicine" shall apply to all copies of complete or substantial portions of the software, including without limitation all source and executable forms, and on any user documentation. 4)The software has been designed for research purposes only and has not been approved for clinical use. It has not been reviewed or approved by the Food and Drug Administration or by any other agency. You acknowledge and agree that clinical applications are neither recommended nor advised. 5)You are responsible for purchasing any external software that may be required for the proper running of this software. You also agree that you are solely responsible for informing your sublicensees, including without limitation your end-users, of their obligations to secure any such required permissions. You further agree that you are solely responsible for determining and divulging the viral nature of any code included in the software. 6)We request that you acknowledge the support of NRG software in publications that utilize the software such as by "This product includes NRG software, developed by the Neuroinformatics Research Group at Washington University School of Medicine" and/or by direct citation. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESSED OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE, AND NON-INFRINGEMENT, ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNERS OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. ANY USE, REPRODUCTION OR DISTRIBUTION OF THE SOFTWARE WHICH IS NOT IN ACCORDANCE WITH THIS AGREEMENT SHALL AUTOMATICALLY REVOKE ALL RIGHTS GRANTED TO YOU UNDER THIS AGREEMENT AND RENDER THIS AGREEMENT NULL AND VOID. THIS AGREEMENT DOES NOT GRANT ANY RIGHTS IN OR TO ANY INTELLECTUAL PROPERTY OWNED BY LICENSOR OR ANY CONTRIBUTOR EXCEPT THOSE RIGHTS EXPRESSLY GRANTED HEREUNDER.
Nrrd
Supported Data Format > Nrrd
Nrrd format: http://teem.sourceforge.net/nrrd/
NUS Imaging Genetics
License > Other/Proprietary License > NUS Imaging Genetics
This toolbox is under the development of Computational Functional Anatomy Laboratory at National University of Singapore. This toolbox is free for academic use.
NVM License
License > Other/Proprietary License > NVM License
Public Source License Version 1.0 - July 1, 2004 Please read this License carefully before downloading this software. By downloading or using this software, you are agreeing to be bound by the terms of this License. If you do not or cannot agree to the terms of this License, please do not download or use the software. Copyright (c) 2000-2004, Neuromorphometrics, Inc. All rights reserved. In the following, "You" or "Your" means an individual or a legal entity exercising rights under this License. You are granted the royalty-free, no cost, nonexclusive right to use and modify NVM solely for your own internal, nontransferable, nonassignable, noncommercial, and nonclinical research purposes solely in the field of brain imaging. As used herein, "noncommercial" use shall include, without limitation, a prohibition on any use of NVM or derivative works made therefrom, by you in any use in research which is sponsored by a for-profit entity or which is subject to any licensing or other rights of a for-profit entity. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: * Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. * Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. * Neither the name of Neuromorphometrics nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
NYUMC FireVoxel-BrainMask Software License Agreement
License > Other/Proprietary License > NYUMC FireVoxel-BrainMask Software License Agreement
FireVoxel-BrainMask Software License Agreement New York University School of Medicine, department of Radiology, Artem Mikheev and Henry Rusinek own all intellectual property in the FireVoxel software. FireVoxel (the "SOFTWARE") is provided to the USER under the following conditions: 1. USER will not supply the Software to anyone else without the prior written permission of New York University School of Medicine ("NYUSM"). 2. No studies other than those specifically AGREED TO will be conducted with the SOFTWARE without the prior written consent of NYUSM. USER agrees it shall only make copies of the SOFTWARE as required to perform the studies agreed to. If additional studies are desired, they may be added and approved by us. 3. The SOFTWARE is supplied solely for academic and non-profit research purposes and shall not be used for any commercial or other purposes whatsoever. USER shall not use the SOFTWARE in conjunction with projects directly funded by for-profit corporations. 4. USER undertakes to use the SOFTWARE in accordance with all relevant laws and regulations. In particular, the SOFTWARE will NOT be used in the diagnosis or treatment of humans. 5. USER agrees that it will not reverse engineer, dissemble, decompile, or otherwise attempt to access the source code to the SOFTWARE. USER agrees it shall not make any derivatives of the SOFTWARE. 6. USER will inform NYUSM of the results of any studies performed by it with the SOFTWARE. USER agrees it will not disclose the results of its use of the SOFTWARE to any entity or any investigator or publish any data or information relating to the SOFTWARE or studies with it, prior to disclosure in writing to NYUSM and allowing NYUSM a period of 45 days from the date of receipt of such disclosure to determine whether or not patent protection should be sought and to file a patent application if appropriate. After the expiration of such 45-day period, or earlier if NYUSM advises that patent protection will not be sought, USER will be free to disclose or publish the results. In any such publication, USER agrees to acknowledge NYUSM as the source of the SOFTWARE unless requested to do otherwise. 7. NYUSM hereby excludes any and all warranties, implied or express, including warranties of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE or of non-infringement of patents or other proprietary rights. The SOFTWARE is provided "as is". In no event shall NYUSM be liable for direct, indirect, special, incidental or consequential damages in connection with the SOFTWARE. USER will indemnify and hold NYUSM harmless from any claims or liability resulting from the use of the SOFTWARE by USER. 8. If the tests or academic research which involves the SOFTWARE results in an invention, whether patentable or not, USER will promptly disclose the invention to NYUSM. Inventorship will be determined according to U.S. Patent law, if patentable or by an agreement between the parties, if not patentable. Patent rights from any invention sharing joint inventorship shall be jointly owned by NYUSM and USER. Such joint patent rights, and the sharing of costs and income associated with such joint inventions, shall be governed under the terms of an Inter-instiutional Agreement to be negotiated in good faith between NYUSM and USER. If USER is the sole inventor of an invention relating to the SOFTWARE, is derived from the SOFTWARE or could not have been made but for the use of SOFTWARE, and in the event such invention should be commercialized, USER shall promptly notify NYUSM. All income and/or other commercial returns and considerations received by USER that are associated with the commercialization and exploitation of such invention shall be shared in proportion to the relative contribution of the parties. 9. Neither anything contained herein, nor the delivery of the SOFTWARE, shall be deemed to grant USER any right or licenses under any patents or patent application or under any know-how, technology or inventions owned by us. 10. The SOFTWARE shall remain the sole property of NYUSM who shall have all right of control thereover, consistent with this Agreement. Upon request by NYUSM you shall promptly destroy or permanently delete all embodiments of the SOFTWARE from any installed equipment and storage media and provide NYUSM with a written statement certifying this has been done. 11. This Agreement shall be governed by the laws of the State of New York. USER: Signed: Date:
OASIS
License > Other/Proprietary License > OASIS
Using data available through the OASIS project requires agreeing with the following: 1. The quality and completeness of the data cannot be guaranteed. Users employ these data at their own risk. 2. Users shall respect restrictions of access to sensitive data. Users will make no attempt to identify the individuals whose images are included in OASIS data sets. 3. Users must acknowledge the use of OASIS data and data derived from OASIS data when publicly presenting any findings or algorithms that benefited from their use. Such presentations include but are not limited to papers, books, book chapters, conference posters, and talks. When publishing findings that benefit from OASIS data, please include the following grant numbers in the acknowledgements section and in the associated Pubmed Central submission: P50 AG05681, P01 AG03991, R01 AG021910, P20 MH071616, U24 RR021382. 4. Redistribution of original OASIS data is permitted so long as the data are redistributed under the same terms and conditions are described in this DUA. 5. Data derived from original OASIS data may be distributed under terms and conditions established by the creators of the data. Users must comply with the terms and conditions of use set by the creators of the data.
Objective C
Programming Language > Objective C
An object-oriented C-based programming language with support for Smalltalk-style messaging and reflection.
Obsessive-Compulsive Disorder
Diagnosis > Obsessive-Compulsive Disorder
Resource is related to or associated with application to Obsessive-compulsive disorder. Often the person carries out the behaviors to get rid of the obsessive thoughts. But this only provides temporary relief. Not doing the obsessive rituals can cause great anxiety. Doctors do not know the exact cause of OCD. Factors that may play a role include head injury, infections, and abnormal function in certain areas of the brain. Genes (family history) seems to play a strong role. Most people who develop it show symptoms by age 30. See also http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0001926/ MESH_UID: D009771
Ontology
Category > Information Resource > Information Specification > Ontology
Controlled, standardized vocabulary that describes objects and the relations between them. NeuroLexID: birnlex_2339
OpenBSD
Operating System > POSIX/UNIX-like > BSD > OpenBSD
OpenBSD operating system.
Open Data Commons Open Database License (ODbL)
License > Other/Proprietary License > Open Data Commons Open Database License (ODbL)
This data is made available under the Open Database License: http://opendatacommons.org/licenses/odbl/1.0/. Any rights in individual contents of the database are licensed under the Database Contents License: http://opendatacommons.org/licenses/dbcl/1.0/ - See more at: http://opendatacommons.org/licenses/odbl/#sthash.SJBlh7SV.dpuf
Open Data Commons Public Domain Dedication and License 1.0
License > Other/Proprietary License > Open Data Commons Public Domain Dedication and License 1.0
See http://www.opendatacommons.org/licenses/pddl/1.0/
Open Software License 3.0
License > GPL-Style Open Source > Open Software License 3.0
Open Software License ("OSL") v. 3.0: http://www.opensource.org/licenses/osl-3.0.php See also: http://www.rosenlaw.com/OSL3.0-explained.pdf
Operating System
The operating system the program requires to run, if any.
Operating System has the following sub-entries: MacOS, Microsoft, OS/2, OS Independent, Other OS, and POSIX/UNIX-like.
Optical Imaging
Domain > Optical Imaging
Optical Imaging (NIRS, DOT, etc.). Represents projects designed to operate on, with, or for optical imaging-based data acquisition, processing, storage, etc.
Optical Imaging
Category > Hardware > Physiological Recording > Optical Imaging
Hardware for imaging using optical signals.
Optical Imaging has one sub-entry: NIRS/FNIR.
ORS Visual SI License
License > Other/Proprietary License > ORS Visual SI License
Commercial product for sale. FOR RESEARCH PURPOSES ONLY ORS Visual SI is available for research purposes only. FDA 510(k) clearance in the United States, Health Canada approval, and the CE mark for countries in the European Union have NOT been applied for nor received for use of this software product in a clinical setting. For clinical applications, please refer to our medical imaging products at www.theobjects.com.
OS/2
Operating System > OS/2
OS/2 operating system.
OS Independent
Operating System > OS Independent
This software or resource does not depend on any particular operating system.
Other
Category > Other
This category is for tools and resources that to not fit into the categories available at this level of the tree (i.e. Software Tool & Information Resource). If you select this, you MUST communicate with the NITRC moderator at moderator@nitrc.org to recommend what missing categorization would be appropriate for the tool/resource.
Other
Programming Language > Unix Shell > Other
Other Unix shell (not sh/bash or csh/tcsh).
Other Audience
Intended Audience > Other Audience
Programs and resources for an unlisted audience.
Other Data Resource
Category > Information Resource > Data Resource > Other Data Resource
Other data source.
Other Environment
Environment > Other Environment
Programs designed to run in an environment other than one listed.
Other Format
Supported Data Format > Other Format
Other data format(s) not specified in the fMRI tool tree.
Other Information Resource
Category > Information Resource > Other Information Resource
An information resource not otherwise specified.
Other KE
Category > Information Resource > Knowledge Environment > Other KE
Other knowledge environment not specified.
Other Omics
Category > Software > Application > Genomic Analysis > Other Omics
Software related to the extraction of information related to "other omics" in contrast to 'genomics'. The English-language neologism omics informally refers to a field of study in biology ending in -omics, such as genomics, proteomics or metabolomics. See http://en.wikipedia.org/wiki/Omics
Other Omics has the following sub-entries: Epigenomics, Interactomics, Metabolomics , Proteomics, and Transcriptomics.
Other OS
Operating System > Other OS
Program is designed for an operating system not listed in NITRC's tool tree.
Other Programming Language
Programming Language > Other Programming Language
Other programming language, specified in description.
Other/Proprietary License
License > Other/Proprietary License
Any license not listed in the licenses section of the NITRC tool tree. If you select this option to indicate a license other than one you described when you registered your tool or resource, please contact the NITRC Moderator at moderator@nitrc.org so we can keep track of licenses represented on NITRC but not in the tool tree.
Other/Proprietary License has the following sub-entries: 3D Slicer License, aBEAT, Academic Free License ("AFL"), ADNI License, Amin, Analyze license, ANIMA Data Usage and Contributor Agreement, ATR_DNI_NEUROSHARE, Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0), Attribution-NonCommercial-NoDerivs CC BY-NC-ND, BIAS License, BIC-MNI Louis Collins, BioMed Central Ltd, BIRN License, BrainMagix SPM Viewer: License & Disclaimer, BrainMap License, BrainMaps.org License, Brainnetome Atlas, BrainNetworkConstructionAnalysisPlatform, BRAINS License, BrainSuite Software License, Version 2.0, Brede Toolbox License, BSD License, GNU Lesser General Public License and GNU General Public License, v, BSMART, Cardware, CeCill v2, Cerebellar White Matter Atlas, CIGAL License, COINS, Columbia University Non-Commercial Software License Agreement, Comercial Licence: Rogue Research Inc., Comercial License: EPILEPSIAE Database, Commercial: Advantis Medical Imaging, Commercial License, Commercial License: ASA Software, Commercial license from Brain Innovation B.V., Maastricht, The Netherlands, Commercial License: Hitachi, Commercial License: MAG, Commercial License: OEI, Commercial License: VPixx, Commercial: NordicNeuroLab, Commerical License:NIRx, Commerical Software, Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported, Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International, DKE License, dtiBrainScope, DTI-TK license, End-User License Agreement for HistoloZee, Epilepsy Research - Henry Ford Hospital License, E-Prime Extensions for fMRI, E-Prime License, FIRMM license, fMRI Grocer License, FNIR COBI Suite, FreeSurfer License, FRIEND License, FSL License, GNU Affero General Public License v3, GNU General Public License v3, GNU GPL v2, GNU Lesser General Public License (plus Addendum), Gradient Non-linearity Unwarping Tool License, GSP Open Access Data Use Terms, g.tec Licence, HFH_DTI_DATA_TOOLS_License, HFH_DTI_License, HFH hippocampus segmentation, HFHS_TLE_Patients_License, HFH_TLE_T1_Hip_Segm License, HFH_TLE_T1_Hip_Segm License4, HI-SPEED Software Packets License, iBEAT, iBrain™ Licence, IDEA License, IIT Human Brain Atlas License, IIT Human Brain Template License, INSTAR, IOWA3 Copywrite Notice, LIBRA license, LONI Software License, LONI/SVE Terms of Use, MagPro Medical Device License, MASI, MGH CSRL License, MIAS license, MINC Licence (BSD'ish), MIRIAD Data Use Agreement, MIT, Mixed: BSD and LGPL, MOCA License, Mosaic License, MPT, MRBrainS license, MriCloud Agreement, NC-ICT Fast Imaging Library Contribution and Software License, NEMO License, NeuronJ License, neuroVIISAS, NIDAG, NIH Data Access Policy, Non-Commercial Software License Agreement, Northwestern University Schizophrenia Data and Software Tool (NUSDAST), not applicable?, NRG License, NUS Imaging Genetics, NVM License, NYUMC FireVoxel-BrainMask Software License Agreement, OASIS, Open Data Commons Open Database License (ODbL), Open Data Commons Public Domain Dedication and License 1.0, ORS Visual SI License, PAMI License, Paradigm License, Penn Hippocampus Atlas, Personal License, Presentation License, ProCTSeg license, PVS_Enhance Software, SaaS, SBIA License, SchizConnect, spatial attention in 3D license, SPM-Workshop Hannover, test, Textpresso License, The General Hospital Corporation, TORTOISE License, TurtleSeg License, UA_VLAB licence, UCSF NCL Software License, V3D License 2010-April, VANDPIRE software license agreement, volBrain is free for non-commercial and non-medical purposes, Web Application - Free to use, WFU ANSIR License, and XNAT License.
Other Software Resource
Category > Software > Other Software Resource
Software resource not otherwise specified.
Other UNIX-like
Operating System > POSIX/UNIX-like > Other UNIX-like
Other specific POSIX or UNIX-like OS.
Other Web Resource
Category > Information Resource > Web Resource > Other Web Resource
A web resource not otherwise specified.
Overlap Metrics
Category > Software > Application > Quantification > Overlap Metrics
Software application for the quantification of 'Overlap Metrics'.
Overlap Metrics has the following sub-entries: DICE Coefficient, Intersection, and Tanomoto Coefficient.
PAMI License
License > Other/Proprietary License > PAMI License
The toolbox is distributed free for non-commercial research purposes, but ownership, copyright, and all rights are retained by the National Laboratory of Pattern Recognition, Institute of Automation, Chinese Academy of Sciences.
Paradigm License
License > Other/Proprietary License > Paradigm License
Paradigm license enforcement is done using a USB key based licensing system. For each license purchased, the customer will be sent a USB key that they can attach to any computer and enjoy a fully licensed copy of Paradigm. There are no location restrictions. A fully-feature 14 day demo can be downloaded from our website. For more information, please visit http://www.paradigmexperiments.com
Parkinson Disease
Diagnosis > Parkinson Disease
Resource is related to or associated with application to Parkinson's Disease. Parkinson's disease (PD) belongs to a group of conditions called motor system disorders, which are the result of the loss of dopamine-producing brain cells. See also http://www.ninds.nih.gov/disorders/parkinsons_disease/parkinsons_disease.htm MESH_UID: D010300
Partial Directed Coherence
Category > Software > Application > Connectivity Analysis > Partial Directed Coherence
A resource that performs Partial Directed Coherence analysis.
Pascal
Programming Language > Pascal
A small and efficient procedural programming language.
Pathways & Networks
Category > Software > Application > Genomic Analysis > Pathways & Networks
A software resource that extracts information related to genetic pathways and networks. Notions of pathways as collections of biologically related genes have recently attempted to fit evolving scientific theories and analyses. A systematic conceptualization of biological pathways posits that pathways are vector driven toward an essential goal (i.e. their constituents as a whole are directed to a common, specific end point). See http://www.ncbi.nlm.nih.gov/pubmed/22480918 Networks can collect genes and other biological elements for quantitative and visual assessment of relationships. Unlike pathways, biological networks are not vector driven toward an essential outcome. Instead, networks are characterized by nodes that are connected by edges representing defined relationships. See http://www.ncbi.nlm.nih.gov/pubmed/22480918
Pathways & Networks has one sub-entry: Annotation.
PDF - Portable Document Format
Supported Data Format > PDF - Portable Document Format
PDF textual format. See http://www.adobe.com/devnet/pdf/pdf_reference.html
Penn Hippocampus Atlas
License > Other/Proprietary License > Penn Hippocampus Atlas
The data is provided in the public domain with the only requirement that any publication that uses the data in any way reference the most recent paper on the Penn Hippocampus Atlas, as found at http://picsl.upenn.edu/people_Yushkevich.aspx
Perfusion
Category > Software > Application > Temporal Transformation > Temporal Curve Fitting > Haemodynamic Response > Perfusion
Software application that performs temporal curve fitting for haemodynamic characterization of 'Perfusion'.
Perfusion has the following sub-entries: Flow, Mean Transit Time, and Volume.
Perl
Programming Language > Perl
A widely adopted scripting/programming language, commonly used for CGI and text processing: http://www.perl.org/
Personal License
License > Other/Proprietary License > Personal License
% License: % Copyright (c) 2011, Donald G. McLaren and Aaron Schultz % All rights reserved. % % Redistribution, with or without modification, is permitted provided that the following conditions are met: % 1. Redistributions must reproduce the above copyright % notice, this list of conditions and the following disclaimer in the % documentation and/or other materials provided with the distribution. % 2. All advertising materials mentioning features or use of this software must display the following acknowledgement: % This product includes software developed by the Harvard Aging Brain Project. % 3. Neither the Harvard Aging Brain Project nor the % names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. % 4. You are not permitted under this Licence to use these files % commercially. Use for which any financial return is received shall be defined as commercial use, and includes (1) integration of all % or part of the source code or the Software into a product for sale or license by or on behalf of Licensee to third parties or (2) use % of the Software or any derivative of it for research with the final aim of developing software products for sale or license to a third % party or (3) use of the Software or any derivative of it for research with the final aim of developing non-software products for sale % or license to a third party, or (4) use of the Software to provide any service to an external organisation for which payment is received. % % THIS SOFTWARE IS PROVIDED BY DONALD G. MCLAREN (mclaren@nmr.mgh.harvard.edu) AND AARON SCHULTZ (aschultz@nmr.mgh.harvard.edu) % ''AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND % FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL <COPYRIGHT HOLDER> BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, % SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, % DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR % TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE % USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH % DAMAGE.
PET/SPECT
Domain > PET/SPECT
Positron Emission Tomography (PET), Single Photon Emission Computed Tomography (SPECT). Represents projects designed to operate on, with, or for PET/SPECT-based data acquisition, processing, storage, etc.
Philips PAR/REC
Supported Data Format > Philips PAR/REC
Philips Medical Systems native data format.
PHP
Programming Language > PHP
A server-side scripting language designed for web development that can be embedded into HTML. PHP generally runs on a web server, taking PHP code as its input and creating HTML pages as its output. http://www.php.net/
Physiological Recording
Category > Hardware > Physiological Recording
Hardware related to the assessment of physiological properties of biological systems.
Physiological Recording has the following sub-entries: EEG, Eye Tracking, MEG, and Optical Imaging.
Physiological Stimulation
Category > Hardware > Physiological Stimulation
Hardware resource for performing physiological stimulation.
Physiological Stimulation has one sub-entry: Transcranial Magnetic Stimulation (TMS).
Piece-wise Linear Warp
Category > Software > Application > Spatial Transformation > Warping > Piece-wise Linear Warp
Software application that performs image warping using 'Piece-wise Linear Warp' technique.
Pipelines and Workflows Supported
Pipelines or workflow systems that are supported by the tool/resource.
Pipelines and Workflows Supported has the following sub-entries: FisWidgets, Java Image Science Toolkit, Kepler, LONI Pipeline, NiPyPe, and XNAT Pipeline.
Platform or Development Environment
Category > Software > Platform or Development Environment
A system that represents a platform or environment for support of software development.
PL/SQL
Programming Language > PL/SQL
PL/SQL Programming Language
Position
Category > Software > Application > Quantification > Position
Software application for the quantification of 'Position'.
POSIX/UNIX-like
Operating System > POSIX/UNIX-like
POSIX plus standard Berkeley socket facilities. Use this category unless the program requires a more specific OS.
POSIX/UNIX-like has the following sub-entries: AIX, BSD, Cygwin, HP-UX, IRIX, Linux, Other UNIX-like, and SunOS/Solaris.
Presentation License
License > Other/Proprietary License > Presentation License
A Presentation license allows the software to be run on a specified number of computers for a specified period of time. We use the term "activation" to refer to the software running on one computer: to run the software, you must first "activate" the software on that computer. The software will not function after the license has expired. Software activation methods There are two methods of software activation: code and key. Presentation licenses are configured to have the number of code and key activations that suit each customer's needs. It is important to understand the difference between these two types of activation methods when placing an order, because you will be asked to specify the method of activation. The method of activation affects the price of the software. Codes. For code activations, the software is activated either automatically, using your username and password or an access code, or through a manual exchange of codes with the web site. This type of activation is tied to a particular computer. Code activations must be renewed annually using the same procedures just described. If you need to upgrade or switch computers, you can move the activation by performing a deactivation procedure on the first computer, and then activating on the second computer. However, the number of times this can be done per year is limited. Keys. For key activations, the license is mediated by a USB key (dongle). The USB key is a small device that plugs into a USB port on the computer. The software only runs when the USB key is connected to the computer. A key activation can be easily moved between computers by moving the USB key. The key will function until the license expires. If you subsequently purchase a new license, you can reprogram your existing keys with the new license via our website. License types Standard Licenses You can order a standard license with any number of code activations and key activations, with a duration of any number of years (up to 10). For example, a standard license might have 2 key activations and 3 code activations, and have a duration of 3 years. There is a volume discount for more activations. The activations on a license must be used by people at the same institution. "Site" Licenses Although standard licenses are most often used by a single research lab, NBS allows activations from standard licenses to be used by anyone from the same institution. This allows multiple research labs from the same institution to share the same license. Thus, a standard license can effectively be used as a site license. This enables individual labs that requires less than 10 activations to still obtain the maximum volume pricing discount. However, all labs are restricted to the same expiration date, and there must be one user at the institution who manages the license. For code activations, the website provides tools for assigning activations to license controllers within the same group. In this way, each lab sharing a license can be assigned their activations by the manager of the license. Student Licenses Undergraduate and graduate students can purchase a license at a reduced cost relative to standard licenses. Student licenses last for 1 year and are restricted to a single code activation. Student licenses must be ordered through the student's NBS account, and students can only purchase 1 license per year. Verification of student status is required. The software is the same, full-feature Presentation software and website-mediated user support as with a standard license. Teaching Lab Licenses A teaching lab license allows the use of the software on institutional computers used exclusively by students in a course setting. These licenses allow a specified number of code activations with a one year duration and are less expensive than standard licenses. The software is the same, full-feature Presentation software and website-mediated user support as with a standard license. Web Experiments Unlike the license types discussed above, Web Experiment activations do not allow the use of the fully-featured Presentation for both development and running of experiments. Web Experiment activations are used to run Presentation experiments on the Presentation Package Player. Web Experiment activations cannot be used to activate Presentation to develop an experiment. Each Web Experiment activation allows a single Presentation experiment to be run on an unlimited number of machines at a time. Each machine must have internet access. You may change what single experiment the web license can run as often as you like. For full details on Presentation licenses, please visit http://www.neurobs.com/presentation/licensing/license_types
Principal Component Analysis
Category > Software > Application > Statistical Operation > Principal Component Analysis
Software application that performs the statistical operation of 'Principal Component Analysis'.
ProCTSeg license
License > Other/Proprietary License > ProCTSeg license
ProCTSeg Software Copyright (C) 2014 IDEA Group, Biomedical Research Imaging Center, University of North Carolina at Chapel Hill. All rights reserved. Correspondence: dinggang_shen@med.unc.edu Web: www.med.unc.edu/bric/ideagroup ProCTSeg is a free software. Permission to use, copy and distribute the software is granted, provided that this license appears in all copies. ProCTSeg is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. ProCTSeg CAN NOT be used for commercial purposes. ProCTSeg SHOULD NOT be used for medical purposes. The authors WILL NOT be responsible for using ProCTSeg in medical conditions.
Programming Language
Computer language in which this program was written, or was meant to support.
Proteomics
Category > Software > Application > Genomic Analysis > Other Omics > Proteomics
Software that extracts information related to the proteome. Proteomics is the large-scale study of proteins, particularly their structures and functions. See http://en.wikipedia.org/wiki/Proteomics
Public Domain
License > Public Domain
Public Domain; no author-retained rights. See http://foldoc.org/foldoc.cgi?public+domain. As a developer, having a work in the public domain means that anyone may modify the work as they wish. This means that users should be careful as there may be more than one slightly different version of a tool or resource in the public domain, and support, data sharing, and reproducibility may be limited.
PVS_Enhance Software
License > Other/Proprietary License > PVS_Enhance Software
Copyright (C) 2017 IDEA Group, Biomedical Research Imaging Center, University of North Carolina at Chapel Hill. All rights reserved. Correspondence: dinggang_shen@med.unc.edu Web: www.med.unc.edu/bric/ideagroup PVS_Enhance is a free software. Permission to use, copy and distribute the software is granted, provided that this license appears in all copies. PVS_Enhance is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. PVS_Enhance CAN NOT be used for commercial purposes. PVS_Enhance SHOULD NOT be used for medical purposes. The authors WILL NOT be responsible for using PVS_Enhance in medical conditions.
Python
Programming Language > Python
Interpreted, object-oriented programming language that emphasises the importance of programmer effort over computer effort: http://www.python.org/
Q-Ball
Category > Software > Application > Modeling > Super Tensor > Q-Ball
Software related to analysis of Q-Ball style higher order diffusion properties.
Quality Metrics
Category > Software > Application > Spatial Transformation > Quality Metrics
Software application that performs 'Quality Metric' analysis of image spatial transformations.
Quality Metrics
Category > Software > Application > Segmentation > Quality Metrics
Generation of 'Quality Metrics' for the results of segmentation, in comparison between segmentation techniques, or with respect to some 'gold standard'.
Quantification
Category > Software > Application > Quantification
A software application generically involved in the generation of 'quantitative' data regarding an input source.
Quantification has the following sub-entries: Morphology, Overlap Metrics, Position, Quantitative Shape Analysis, Stereology, and Volumetric Analysis.
Quantitative Shape Analysis
Category > Software > Application > Quantification > Quantitative Shape Analysis
Software application for the quantification of 'Quantitative Shape Analysis'.
R
Programming Language > R
The R statistical computing language: http://www.r-project.org/
Random Walk
Category > Software > Application > Modeling > Random Walk
Software application to perform modeling using 'Random Walk' techniques.
Ray Tracing
Category > Software > Application > Visualization > Rendering > Ray Tracing
Software application for visualization using 'Ray Tracing' rendering.
Region Growing
Category > Software > Application > Segmentation > Region Growing
Segmentation by region growing techniques.
Region Growing has one sub-entry: Constrained Region Growing.
Region of Interest
Category > Software > Application > Segmentation > Region of Interest
Segmentation for the generation of specific 'Regions of Interest'.
Region of Interest has one sub-entry: Labeling.
Registration
Category > Software > Application > Spatial Transformation > Registration
Software application that performs image spatial transformation for the purposes of image 'Registration'. NeuroLexID: birnlex_2229
Registration has the following sub-entries: Fiducial, Image-to-Image, and Image-to-Template.
Regression
Category > Software > Application > Statistical Operation > Regression
Software application that performs the statistical operation of 'Regression'.
Regression has two sub-entries: Linear and Nonlinear.
Rendering
Category > Software > Application > Visualization > Rendering
Software application visualization using 'Rendering'.
Rendering has the following sub-entries: Ray Tracing, Surface Rendering, and Volume Rendering.
Resampling
Category > Software > Application > Spatial Transformation > Resampling
Software application that performs image spatial transformation and subsequent 'Resampling' of the image.
Resampling has the following sub-entries: Nearest Neighbor, Sinc Function Interpolation, Spline Interpolation, and Tri-linear.
Response Monitoring
Category > Hardware > Experiment Control > Response Monitoring
Hardware for the monitoring of responses during an experiment.
Rett Syndrome
Diagnosis > Rett Syndrome
Resource is related to or associated with application to Rett Syndrome.  Rett syndrome is a childhood neurodevelopmental disorder that affects females almost exclusively. See also http://www.ninds.nih.gov/disorders/rett/rett.htm MESH_UID: D015518
Ruby
Programming Language > Ruby
Ruby programming language: http://www.ruby-lang.org/en/
Russian
Natural Language > Russian
Russian
SaaS
License > Other/Proprietary License > SaaS
Software as a service, or "Service(s) as a Software Substitute" (SaaSS), is a software licensing and delivery model in which software is licensed on a subscription basis and is centrally hosted on the cloud by independent software vendors (ISVs) or application service providers (ASPs). It is sometimes referred to as "service(s) as a software substitute" (SaaSS) or "on-demand software".[4] SaaS is typically accessed by users using a thin client via a web browser. SaaS has become a common delivery model for many business applications, including office & messaging software, DBMS software, management software, CAD software, dDevelopment software, gamification, virtualization,accounting, collaboration, customer relationship management (CRM), management information systems (MIS), enterprise resource planning (ERP), invoicing, human resource management (HRM), content management (CM) and service desk management. SaaS has been incorporated into the strategy of all leading enterprise software companies. One of the biggest selling points for these companies is the potential to reduce IT support costs by outsourcing hardware and software maintenance and support to the SaaS provider From Wikipedia
SBIA License
License > Other/Proprietary License > SBIA License
Terms and Conditions of Use By using software developed by The Section of Biomedical Image Analysis (SBIA) at The University of Pennsylvania, you are agreeing to the following terms and conditions: 1. Permission is granted to use this software without charge for non-commercial research purposes only. 2. SBIA retains all rights and ownership of any software developed by this laboratory. 3. You may not redistribute the obtained software. You may create copies for your own personal use but we ask you to refer any one else to SBIA’s website (https://www.rad.upenn.edu/sbia/software/index.html) for obtaining a copy of our software. 4. You may not remove or alter any copyright, license or other proprietary notices in the software. 5. You may publish papers or books using results produced using SBIA’s software always providing appropriate citations. 6. The software is provided “AS IS”. None of the authors or members of The Section of Biomedical Image Analysis at the University of Pennsylvania assume any liability or responsibility for the use of this software. 7. In particular, the software is for research purposes only and it has not been evaluated for clinical use.
Scanner
Category > Hardware > Scanner
A hardware resource that consists of physical imaging device, typically referred to as a 'scanner'. The scanner outputs images or other recordings of the subject matter.
Schema
Category > Information Resource > Information Specification > Schema
Descriptions of schema (schematic) representations of information.
Scheme
Programming Language > Scheme
Scheme programming language.
SchizConnect
License > Other/Proprietary License > SchizConnect
http://www.schizconnect.org/data_use_agreements/5/render_pdf
Schizophrenia
Diagnosis > Schizophrenia
Resource is related to or associated with application to Schizophrenia. http://www.ncbi.nlm.nih.gov/mesh/68012559 MESH_UID: D012559
Segmentation
Category > Software > Application > Segmentation
Software application for the generation of the 'Segmentation' of input data into regions of 'homogeneous' characteristic. Various characteristics can be utilized to influence the selection of regions as targets for the segmentation. NeuroLexID:birnlex_2228
Shape Analysis
Category > Software > Application > Shape Analysis
Software application for the performance of 'Shape Analysis'. Shape analysis is the characterization of shape features contained within the dataset.
Shape Analysis has two sub-entries: Medial Axis and Shape Decomposition.
Shape Decomposition
Category > Software > Application > Shape Analysis > Shape Decomposition
Software application for the decomposition of shape representations into more basic shape elements.
Shape Decomposition has two sub-entries: Elliptical Harmonics and Spherical Harmonics.
sh/bash
Programming Language > Unix Shell > sh/bash
Bourne Shell or Bourne Again Shell
Simulated Annealing
Category > Software > Application > Modeling > Simulated Annealing
Software application to perform modeling using 'Simulated Annealing' techniques.
Simulation
Category > Software > Application > Modeling > Simulation
Software application to perform modeling using 'Simulation' techniques.
Sinc Function Interpolation
Category > Software > Application > Spatial Transformation > Resampling > Sinc Function Interpolation
Software application that performs image resampling using 'Sinc Function Interpolation'.
Single Neuron Modeling
Category > Software > Application > Modeling > Neuronal Modeling > Single Neuron Modeling
From Wikipedia (http://en.wikipedia.org/wiki/Computational_neuroscience): Even single neurons have complex biophysical characteristics. Hodgkin and Huxley's original model only employed two voltage-sensitive currents, the fast-acting sodium and the inward-rectifying potassium. Though successful in predicting the timing and qualitative features of the action potential, it nevertheless failed to predict a number of important features such as adaptation and shunting. Scientists now believe that there are a wide variety of voltage-sensitive currents, and the implications of the differing dynamics, modulations, and sensitivity of these currents is an important topic of computational neuroscience.[7] The computational functions of complex dendrites are also under intense investigation. There is a large body of literature regarding how different currents interact with geometric properties of neurons.[8] Some models are also tracking biochemical pathways at very small scales such as spines or synaptic clefts. There are many software packages, such as GENESIS and NEURON, that allow rapid and systematic in silico modeling of realistic neurons. Blue Brain, a project founded by Henry Markram from the École Polytechnique Fédérale de Lausanne, aims to construct a biophysically detailed simulation of a cortical column on the Blue Gene supercomputer.
SNP's & Genes
Category > Software > Application > Genomic Analysis > SNP's & Genes
Software that extracts information related to SNP's and/or genes. A single-nucleotide polymorphism (SNP, pronounced snip; plural snips) is a DNA sequence variation occurring when a single nucleotide — A, T, C or G — in the genome (or other shared sequence) differs between members of a biological species or paired chromosomes in an human. See http://en.wikipedia.org/wiki/Single-nucleotide_polymorphism A gene is a molecular unit of heredity of a living organism. It is a name given to some stretches of DNA and RNA that code for a polypeptide or for an RNA chain that has a function in the organism. See http://en.wikipedia.org/wiki/Gene
SNP's & Genes has the following sub-entries: Copy Number Variation, Genetic Association, and Imputation.
Software
Category > Software
A tool or resource that comprises computer software functionality, including self-contained executable, software development support or libraries that are invoked by the user on local machines or remote servers.
Source Separation Analysis
Category > Software > Application > Modeling > Source Separation Analysis
A software resource that performs Source Separation analysis.
Spanish
Natural Language > Spanish
Spanish
spatial attention in 3D license
License > Other/Proprietary License > spatial attention in 3D license
Using functional MRI and a virtual three-dimensional paradigm, aimming at investigated the neural interface which integrated information between the dorsal and the ventral streams. The results showed that the parietal-occipital junction (POJ) and bilateral superior occipital gyrus (SOG) showed relative increased activity when responded to a target presented in near space than in far space, which was independent of the retinotopic or perceived size of the target. Furthermore, the POJ showed enhanced functional connectivity with both the dorsal and ventral streams during far space processing irrespective of the target size, supporting the role of the POJ as an interface between the two streams. In contrast, the SOG showed enhanced functional connectivity only with the ventral stream if retinotopic sizes of the targets in near and far space were matched, which suggested the functional dissociation between the POJ and SOG.
Spatial Convolution - Deconvolution
Category > Software > Application > Spatial Transformation > Spatial Convolution - Deconvolution
Software application that performs image spatial transformation for the purpose of 'Spatial Convolution - Deconvolution'.
Spatial Transformation
Category > Software > Application > Spatial Transformation
Software application that performs a 'spatial transformation' on input data. A spatial transformation involves manipulation of the spatial basis for which data is associated.
Spectral Analysis
Category > Software > Application > Temporal Transformation > Spectral Analysis
Software application that performs temporal transformation for 'Spectral Analysis'.
Spherical Harmonics
Category > Software > Application > Shape Analysis > Shape Decomposition > Spherical Harmonics
Shape decomposition through the use of 'Spherical Harmonics'.
Sphericity
Category > Software > Application > Modeling > Tensor Metric > Sphericity
Software application that performs tensor metric analysis of 'Sphericity'.
Spline Interpolation
Category > Software > Application > Spatial Transformation > Resampling > Spline Interpolation
Software application that performs image resampling using 'Spline Interpolation'.
Splines
Category > Software > Application > Visualization > Splines
Software application visualization using 'Splines'.
SPM-Workshop Hannover
License > Other/Proprietary License > SPM-Workshop Hannover
Commercial
Statistical Operation
Category > Software > Application > Statistical Operation
Software application that performs 'Statistical Operations' on input data.
Stereology
Category > Software > Application > Quantification > Stereology
Software application for the quantification of 'Stereology' properties.
Stimulus Presentation
Category > Hardware > Experiment Control > Stimulus Presentation
Hardware systems for the presentation of experimental stimuli.
STRF
Category > Software > Application > Temporal Transformation > Temporal Curve Fitting > STRF
Software application that performs temporal curve fitting for 'STRF' calculation.
Stroke
Diagnosis > Stroke
Resource is related to or associated with application to Stroke. A stroke occurs when the blood supply to part of the brain is suddenly interrupted or when a blood vessel in the brain bursts, spilling blood into the spaces surrounding brain cells. See also http://www.ninds.nih.gov/disorders/stroke/stroke.htm MESH_UID: D020521
Substance-Related Disorders
Diagnosis > Substance-Related Disorders
Resource is related to or associated with application to Drug dependence. A person may have a physical dependence on a substance without having an addiction. For example, certain blood pressure medications do not cause addiction but they can cause physical dependence. Other drugs, such as cocaine, cause addiction without leading to physical dependence.Tolerance to a drug (needing a higher dose to attain the same effect) is usually part of addiction.See also: Drug abuse can lead to drug dependence or addiction. People who use drugs for pain relief may become dependent, although this is rare in those who don't have a history of addiction.The exact cause of drug abuse and dependence is not known. However, a person's genes, the action of the drug, peer pressure, emotional distress, anxiety, depression, and environmental stress all can be factors. Peer pressure can lead to drug use or abuse, but at least half of those who become addicted have depression, attention deficit disorder, post-traumatic stress disorder, or another mental health problem. Children who grow up in an environment of illicit drug use may first see their parents using drugs. This may put them at a higher risk for developing an addiction later in life for both environmental and genetic reasons. There are several stages of drug use that may lead to dependence. Young people seem to move more quickly through the stages than do adults. See also http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0002490/ MESH_UID: D019966
Substance-Related Disorders has the following sub-entries: Alcohol-Related Disorders, Cocaine-Related Disorders, and Tobacco Use Disorder.
SunOS/Solaris
Operating System > POSIX/UNIX-like > SunOS/Solaris
Any Sun Microsystems operating system.
Super Tensor
Category > Software > Application > Modeling > Super Tensor
Software that is related to modeling higher-than-tensor order properties.
Super Tensor has two sub-entries: Diffusion Spectrum and Q-Ball.
Supported Data Format
The data formats supported (read or write) by this tool/resource.
Surface Analysis
Category > Software > Application > Surface Analysis
Software application to perform analysis of surface data. Surface data is a representation of information as it is assigned to the 'surface' representation of a data source.
Surface Analysis has two sub-entries: Curvature and Thickness.
Surface Rendering
Category > Software > Application > Visualization > Rendering > Surface Rendering
Software application for visualization using 'Surface Rendering'.
Surrogate Data Analysis
Category > Software > Application > Statistical Operation > Surrogate Data Analysis
Software that performs Surrogate Data analysis.
System Administrators
Intended Audience > System Administrators
Programs and resources for people who administer computers and networks.
Talairach
Category > Software > Application > Spatial Transformation > Registration > Image-to-Template > Talairach
Software application that performs image registration using Image-to-Template matching with 'Talairach' template.
Tanomoto Coefficient
Category > Software > Application > Quantification > Overlap Metrics > Tanomoto Coefficient
Software application for the quantification of the overlap metric of 'Tanomoto Coefficient'.
Tcl/Tk
Programming Language > Tcl/Tk
A easy to learn, but powerful scripting language most commonly used for rapid prototyping, scripted applications, GUIs, and testing. Use this category if Tcl is used with or without Tk (a GUI toolkit for Tcl). http://www.tcl.tk/
Temporal Convolution - Deconvolution
Category > Software > Application > Temporal Transformation > Temporal Convolution - Deconvolution
Software application that performs temporal transformation for 'Temporal Convolution - Deconvolution'.
Temporal Curve Fitting
Category > Software > Application > Temporal Transformation > Temporal Curve Fitting
Software application that performs temporal transformation for 'Temporal Curve Fitting'.
Temporal Curve Fitting has two sub-entries: Haemodynamic Response and STRF.
Temporal Integration
Category > Software > Application > Temporal Transformation > Temporal Integration
Software application that performs temporal transformation for 'Temporal Integration'.
Temporal Transformation
Category > Software > Application > Temporal Transformation
Software application that performs a 'temporal transformation' of the input information.
Temporal Wavelet Analysis
Category > Software > Application > Temporal Transformation > Temporal Wavelet Analysis
Software application that performs temporal transformation using 'Temporal Wavelet Analysis'.
Tensor Metric
Category > Software > Application > Modeling > Tensor Metric
Software application that generates 'Tensor Metrics' from input data.
Tensor Metric has the following sub-entries: Anisotropy, Direction, and Sphericity.
test
License > Other/Proprietary License > test
test geagagaewgeageag
Test Data
Category > Information Resource > Data Resource > Test Data
A resource that provides test or sample data for validation or testing purposes.
TeX
Supported Data Format > TeX
Latex document markup.
Textpresso License
License > Other/Proprietary License > Textpresso License
COPYRIGHT 2000-2008 CALIFORNIA INSTITUTE OF TECHNOLOGY. FOR QUESTIONS OR COMMENTS REGARDING THIS SOFTWARE, YOU MAY CONTACT HANS-MICHAEL MULLER AT MUELLER(AT)ITS.CALTECH.EDU. PERMISSION TO USE, COPY AND DISTRIBUTE THIS SOFTWARE AND ITS DOCUMENTATION FOR NONCOMMERCIAL, RESEARCH PURPOSES WITHOUT FEE AND WITHOUT A WRITTEN AGREEMENT IS HEREBY GRANTED, PROVIDED THAT THE ABOVE COPYRIGHT NOTICE, THIS PARAGRAPH AND THE FOLLOWING TWO PARAGRAPHS APPEAR IN ALL COPIES. A LICENSE FOR THE USE, COPY, OR DISTRIBUTION OF THIS SOFTWARE FOR COMMERCIAL OR FOR-PROFIT USE MUST BE OBTAINED FROM: OFFICE OF TECHNOLOGY TRANSFER CALIFORNIA INSTITUTE OF TECHNOLOGY 1200 E. CALIFORNIA BLVD M/C 210-85 PASADENA, CA 91125 FAX (626) 356-2486 THE CALIFORNIA INSTITUTE OF TECHNOLOGY MAKES NO PROPRIETARY CLAIMS TO THE RESULTS, PROTOTYPES, OR SYSTEMS SUPPORTING AND/OR NECESSARY FOR THE USE OF THE RESEARCH, RESULTS AND/OR PROTOTYPES FOR NON-COMMERCIAL, RESEARCH USES ONLY. IN NO EVENT SHALL CALIFORNIA INSTITUTE OF TECHNOLOGY BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS, ARISING OUT OF THE USE OF THIS SOFTWARE AND ITS DOCUMENTATION, EVEN IF THE CALIFORNIA INSTITUTE OF TECHNOLOGY HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. THE CALIFORNIA INSTITUTE OF TECHNOLOGY SPECIFICALLY DISCLAIMS ANY WARRANTIES, INCLUDING THE IMPLIED WARRANTIES OR MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE SOFTWARE AND DOCUMENTATION PROVIDED HEREUNDER IS ON AN "AS IS" BASIS, AND THE CALIFORNIA INSTITUTE OF TECHNOLOGY HAS NO OBLIGATIONS TO PROVIDE MAINTENANCE, UPDATES, ENHANCEMENTS OR MODIFICATIONS.
The General Hospital Corporation
License > Other/Proprietary License > The General Hospital Corporation
ACADEMIC RESEARCH END-USER SOFTWARE LICENSE AGREEMENT By downloading, using, reproducing, displaying or otherwise accessing the Software which is the subject of this Agreement, Licensee (defined below) hereby agrees to all of the terms and conditions in this Agreement. If Licensee does not so agree, Licensee shall have no license or right to use, reproduce or display the Software. This Academic Research End-User Software License Agreement (the “Agreement”) is by and between The General Hospital Corporation, d/b/a Massachusetts General Hospital, a Massachusetts not-for-profit corporation, with a principal place of business at 55 Fruit Street, Boston, Massachusetts 02114 (the “Licensor”) and the individual who is or has engaged in downloading, using, reproducing, displaying or otherwise accessing the Software described herein (the “Individual”) and the institution or entity which employs or is otherwise affiliated with such Individual in connection with the Individual’s use of the Software (the “Institution” and together with the Individual, collectively “Licensee”), and is effective as of the date the Software is first downloaded or otherwise accessed by the Individual or the Institution (the “Effective Date”). Each party to this Agreement is referred to herein as a “Party” and collectively as the “Parties.” RECITALS Licensor, through its investigators Ruopeng Wang, MS and Van Wedeen, MD of the Department of Radiology, has developed the Software (defined below), for use in the field of Diffusion Imaging research, and desires to permit Licensee to use the software for Research Purposes only (defined below). Licensee desires to license the Software solely for Research Purposes in accordance with the terms and conditions hereof. Now therefore, in consideration of the premises and covenants hereinafter set forth and other good and valuable consideration, the receipt and sufficiency of which is hereby acknowledged, the Parties hereby agree as follows: I. Certain Definitions. As used in this Agreement, the following terms shall have the following meanings: (a) “Affiliate” with respect to either entity Party means any corporation or other legal entity other than that Party in whatever country organized, controlling, controlled by or under common control with that Party. The term “control” shall mean the power, direct or indirect, to elect or appoint fifty percent (50%) or more of the directors or trustees, or to cause direction of management and policies, whether through the ownership of voting securities, by contract or otherwise. (b) “Binary Code” means the embodiment of a computer program which is not in human-readable form, and which is derived from source code of such program by means of assembly or compilation into either a computer-specific non-executable code, or an executable code capable of being run on a computer system. (c) “Commercial Purposes” shall mean the sale, lease, license or other transfer of the Software, use of the Software for the performance of contract research, or to produce or manufacture products for sale, or to develop, use, and/or distribute educational materials based on the Software, including but not limited to courseware or text books. (d) “Patent Rights” means Licensor’s rights in the Software under U.S. and foreign patent law, if applicable, as may be further described in Appendix A. (e) “Research Purposes” means the academic or government funded research under the direction of the Individual at the Institution. (f) “Software” means the computer programs known as TrackVis and Diffusion Toolkit and any related documentation as further defined and described in Appendix A. 2. Software License Grant. Subject to the terms and conditions contained in this Agreement, Licensor hereby grants to Licensee a nonexclusive, nontransferable, nonsublicensable, royalty-free license: (i) under Licensor’s copyright rights, to reproduce and display the Software; and (ii) under Licensor’s Patent Rights, to use the Software (but not to sell or otherwise transfer the Software); provided, however, that the foregoing license grant is limited to Research Purposes only and only at the Institution. The Software shall not be reproduced, displayed or used for any Commercial Purposes unless Licensor has consented in writing in advance and the Parties have entered into a commercial license agreement containing appropriate terms for royalties, and such other terms and conditions as are required by Licensor. 3. Title and Ownership. The Software is protected by copyright and foreign treaties, and may be subject to Patent Rights and other proprietary rights of Licensor and, if applicable, its licensor(s). Except to the extent of the limited license provided for in this Agreement, Licensor shall retain all of its rights, title and interest in and to the Software. This Agreement does not grant any rights in or to any intellectual property owned or licensed by Licensor except those rights expressly granted hereunder, and except as specifically set forth in this Agreement, Licensee shall have no other rights in or to the Software nor any underlying intellectual property. 4. Conditions. As a condition to the license granted hereunder, Licensee, and each of Individual or the Institution, as applicable, shall comply at all times with each of the following: (a) Licensee shall preserve and maintain all applicable attributions, copyright notices and licenses included in or applicable to the Software. (b) Licensee may make copies of the Software but only to the extent required to support Licensee’s authorized use of the Software for Licensee’s Research Purposes. Licensee agrees to reproduce on any such copies all of Licensor's proprietary notices contained in and on the Software and its associated media. (c) Licensee shall use the Software only for Research Purposes and only at the Institution. (d) Licensee shall not sell, license, distribute, rent, lease, offer on an ASP or service bureau basis, grant a security interest in, sublicense or otherwise transfer or permit any third party (other than Licensee’s own employees, students and fellows or other collaborators solely in connection with permitted activities at the Institution) to access or use all or any portion of the Software in any form or any of the rights therein or thereto. (e) This Agreement does not grant any rights with respect to third party software, except those rights that Licensor has been authorized by a third party to grant to Licensee, and accordingly Licensee is solely responsible for obtaining any permissions from third parties which are necessary to use, reproduce, or display, the Software. (f) Licensee shall exercise its rights pursuant to this Agreement in compliance with all applicable governmental laws, regulations and orders, including without limitation those relating to export and import control. (g) To the extent such restriction is not prohibited by applicable law, Licensee shall not decompile, disassemble or reverse engineer the Software or its structure, sequence, organization, algorithms or data. (h) Licensee shall notify Licensor promptly if it becomes aware of any unauthorized access to or use or transfer of the Software. (i) Institution shall be jointly responsible for the actions of Individuals hereunder with respect to the Software and compliance with the terms of this Agreement. Licensee hereby represents and warrants that all information provided to Licensor in connection with accessing, downloading and/or using the Software is accurate, true and complete. 5. Limitations. (a) LICENSEE ACKNOWLEDGES THAT THE SOFTWARE HAS BEEN DESIGNED FOR RESEARCH PURPOSES ONLY AND HAS NOT BEEN REVIEWED OR APPROVED BY THE FOOD AND DRUG ADMINISTRATION OR BY ANY OTHER AGENCY, AND FURTHER ACKNOWLEDGES THAT CLINICAL APPLICATIONS ARE NEITHER RECOMMENDED NOR ADVISED. (b) Licensee shall be solely responsible for installing and maintaining the Software and for testing the Software for proper operation. Unless otherwise agreed in writing, Licensor shall have no obligation to provide to Licensee any support, maintenance, corrections, debugging, improvements, modifications, upgrades or updates of the Software, or otherwise assist Licensee in installing, configuring, integrating, understanding or using the Software. 6. Publication. Licensee may publish and present the results of Licensee’s use of the Software in peer-reviewed journals. Licensee agrees to provide acknowledgement to Licensor and its designated professional staff, Ruopeng Wang, MS and Van Wedeen, MD, who participated in the creation of the Software, in such publications or presentations in accordance with standard academic practice. 7. Term and Termination. This Agreement and the license granted by Licensor hereunder shall commence on the Effective Date and continue in effect until terminated by any Party as provided herein. Licensee may terminate this Agreement at any time by destroying all copies of the Software and notifying Licensor in writing of such destruction, or returning all copies of the Software to Licensor. Licensor may terminate this Agreement upon sixty (60) days prior notice to Licensee if Licensee does not comply with any of the material provisions of this Agreement and such breach remains uncured at the end of such sixty (60) day period, provided however that in the case of any breach of this Agreement that Licensor in its reasonable judgment deems uncurable, Licensor may terminate this Agreement immediately upon notification to Licensee. Upon any such termination, Licensee shall immediately cease all uses of the Software and any portion thereof, and shall return or destroy all copies of the Software and any portion thereof and, if so requested, provide written certification of such destruction to Licensor. 8. Disclaimer. Licensee accepts the Software free of charge and on an &quot;AS IS&quot; basis. Licensee understands and acknowledges that the Software is experimental, may contain errors and is subject to further development and revision and assumes the entire risk as to its use of the Software. Licensor does not guarantee the accuracy of the Software, or of any results or data, and assumes no obligation to notify Licensee of any bug fixes, enhancements or other modifications that may be made to the Software. LICENSOR SPECIFICALLY DISCLAIMS ALL EXPRESS AND IMPLIED WARRANTIES OF ANY KIND INCLUDING, BUT NOT LIMITED TO, ANY WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. 9. Limitation of Liability; Indemnification. IN NO EVENT SHALL LICENSOR OR ANY OF ITS TRUSTEES, DIRECTORS, OFFICERS, MEDICAL OR PROFESSIONAL STAFF, EMPLOYEES, STUDENTS OR AGENTS (“LICENSOR’S PERSONNEL”) BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT, SPECIAL, INCIDENTAL, EXEMPLARY OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY ARISING IN ANY WAY RELATED TO THE SOFTWARE OR THIS AGREEMENT, EVEN IF LICENSOR OR ANY OF LICENSOR’S PERSONNEL HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES. EXCEPT TO THE EXTENT PROHIBITED BY LAW OR REGULATION, LICENSEE ASSUMES ALL LIABILITY FOR LICENSEE’S USE, REPRODUCTION, AND DISPLAY OF THE SOFTWARE, AND AGREES TO INDEMNIFY AND HOLD HARMLESS LICENSOR AND EACH OF LICENSOR’S PERSONNEL FROM AND AGAINST ANY AND ALL DAMAGES, COSTS, LIABILITY, LOSS OR EXPENSES (INCLUDING ATTORNEYS’ FEES AND COSTS) ARISING IN CONNECTION WITH ANY CLAIMS, SUITS, ACTIONS, DEMANDS AND JUDGMENTS RELATED TO LICENSEE’S USE, REPRODUCTION, AND DISPLAY OF THE SOFTWARE. 10. Independent Status. Neither the making of this Agreement nor the performance of its provisions shall be construed to constitute any Party an agent, employee or legal representative of the other Party for any purpose whatsoever. 11. Use of Name. Except as expressly provided in this Agreement or pursuant to specific prior written permission of the applicable party, Licensee shall not use any of the names, logos or trademarks, or any adaptation thereof, of Licensor or any of its Affiliates, or of any trustee, director, officer, staff member, employee, student or agent thereof, or of any funding agency, in any advertising, promotional or sales material or publicity or in any document employed to obtain funds or financing, or to endorse or promote research results or products produced in whole or in part by operation of the Software or derived from or based on the Software. Such permission shall be obtained from Licensor’s Chief Public Affairs Officer. Licensee hereby grants permission to Licensor to use Licensee’s name for purposes of obtaining funds from any funding agency. 12. U.S. Government Rights. For Software supported by federal funding, the license granted under this Agreement is subject to the rights, conditions and limitations imposed by U.S. law including without limitation 35 U.S.C. § 202 et seq. and regulations pertaining thereto. Notwithstanding the foregoing, the license granted under this Agreement does not constitute a response by Licensee to any request for proposals, bid solicitation or other invitation or offer to contract by any governmental authority but instead constitutes an offer to enter into a license agreement only upon the terms set forth herein. If the U.S. Government or any other governmental authority shall seek to acquire the Software and its acquisition of such Software would result in the U.S. Government or such other governmental authority having rights in the Software that are at variance with the terms and conditions of this Agreement and license, Licensee shall not be bound by any such rights unless it shall have expressly entered into an amendment of this Agreement that shall set forth such rights in accordance with any applicable governmental rules or regulations, including the Federal Acquisition Regulation and the Defense Federal Acquisition Regulation Supplement. 13. General. This Agreement constitutes the entire understanding of the Parties with respect to the subject matter hereof, superseding and merging any prior oral or written understandings between the Parties with respect thereto. Sections 1, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12 and 13 shall survive any termination of this Agreement. This Agreement may be modified or amended only in a writing signed by duly authorized representatives of the Parties hereto. If any part of this Agreement is adjudged to be invalid or unenforceable, the Parties intend that such invalidity shall not affect any other provision hereof. Any waiver or failure of any Party to assert a right hereunder shall not constitute a waiver or excuse a similar failure in any other circumstance. Licensee shall not assign any of its rights or obligations under this Agreement without the prior written consent of Licensor. Except to the extent prohibited by law or regulation, this Agreement shall be governed by and construed in accordance with the laws of The Commonwealth of Massachusetts, excluding its provisions with respect to conflict of laws, and each Party consents to the exclusive jurisdiction and venue of courts in Boston, Massachusetts in all disputes relating to this Agreement. Headings in this Agreement are for convenience only and are not intended to be used to interpret or construe this Agreement. This Agreement may be executed in counterparts and delivered by facsimile with the same effect as an original. Each of the undersigned represents that such individual is duly authorized to execute this Agreement.
Thickness
Category > Software > Application > Surface Analysis > Thickness
Software application that performs a surface analysis of 'Thickness'.
Three Dimensional Display
Category > Software > Application > Visualization > Image Display > Three Dimensional Display
Visualization of stacks of two-dimensional images in (at least) the three cardinal planes. Surface visualization should be categorized under Visualization -> Rendering -> Surface Rendering.
Time Domain Analysis
Category > Software > Application > Time Domain Analysis
Software application that performs 'Time Domain Analysis'. This is in contrast to temporal transformation which may transform the temporal characteristics of input data.
Time Domain Analysis has the following sub-entries: ANOVA, Correlation, and Event Related Potential.
Time Lapse
Category > Software > Application > Temporal Transformation > Time Lapse
Software application that performs temporal transformation for 'Time Lapse' analysis.
Tobacco Use Disorder
Diagnosis > Substance-Related Disorders > Tobacco Use Disorder
Resource related to tobacco and smoking. MESH_UID: D014029
Tomography
Category > Software > Application > Image Reconstruction > Tomography
Software application for the image reconstruction of 'Tomography' images.
Tomography has two sub-entries: Back Projection and Fourier.
TORTOISE License
License > Other/Proprietary License > TORTOISE License
PROVIDER: The Section on Tissue Biophysics and Biomimetics (STBB), part of the Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD) at the National Institutes of Health, an Agency of the Federal Government Definitions: The term “SOFTWARE” throughout this agreement means the codes/programs which run the modules of the TORTOISE package. The term “RECIPIENT” means the party that downloads the software. The Term “PROVIDER” means the NIH institute named above. By downloading or otherwise receiving the SOFTWARE, RECIPIENT may use the SOFTWARE subject to RECIPIENT’s agreement to the following terms: 1. RECIPIENT shall provide a valid name and contact information including their title and academic institution before downloading the SOFTWARE. 2. THE SOFTWARE SHALL NOT BE USED IN THE TREATMENT OR DIAGNOSIS OF HUMAN SUBJECTS. 3. RECIPIENT shall not distribute the SOFTWARE, in whole or in part without express advance written approval of PROVIDER. 4. The SOFTWARE may be used for research and academic purposes only. The SOFTWARE may not be used for commercial purposes. RECIPIENT will not license or sell or use the SOFTWARE for commercial purposes or applications. 5. RECIPIENT shall not modify, extend, decompile, make derivatives of, merge, publish, reverse engineer or distribute the SOFTWARE without written permission from PROVIDER. 6. RECIPIENT agrees to comply with all regulations applicable to the use of the SOFTWARE. 7. RECIPIENT may publish or otherwise publicly disclose the results of using the SOFTWARE. RECIPIENT agrees to acknowledge PROVIDER’s contribution of the SOFTWARE in all written publications containing any data or information regarding or resulting from use of the SOFTWARE. 8. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE PROVIDER OR THE INDIVIDUAL DEVELOPERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY OF ANY KIND. USE OF THE SOFTWARE BY RECIPIENT IS AT RECIPIENT’S OWN RISK. PROVIDER makes no representations that the use of SOFTWARE will not infringe any patent or proprietary rights of third parties. 9. RECIPIENT will send to PROVIDER annual general reports regarding the application of the SOFTWARE and the effectiveness and problems encountered in using the SOFTWARE, without disclosing RECIPIENT’s confidential information. Information from general reports may be used by the PROVIDER to enhance the capabilities of the SOFTWARE. Reports can be forwarded to the PROVIDER at the following address: tortoisedti@gmail.com. 10. To the extent permitted by law, RECIPIENT agrees to hold the PROVIDER harmless and to indemnify the PROVIDER for all liabilities, demands, damages, expenses and losses arising out of RECIPIENT’s use for any purpose of the SOFTWARE. RECIPIENT agrees not to claim, infer, or imply endorsement by the United States Government, or any of its organizational units, contractors or employees. 11. By conveying the SOFTWARE herein, the PROVIDER and the individual developers will not be obligated to provide to the RECIPIENT, or any other party, support in any form nor will Provider be obligated to replace the SOFTWARE should it become erased or otherwise destroyed. Accordingly, the PROVIDER and the individual developers shall be under no obligation to provide RECIPIENT any service, guidance, updates or assistance. 12. Title in the SOFTWARE shall remain with the PROVIDER. It is understood that nothing herein will be deemed to constitute, by implication or otherwise, the grant to either Party by the other of any license or other rights under any patent, patent application or other intellectual property right or interest. PROVIDER reserves the right to distribute the SOFTWARE to others and to use it for PROVIDER’s own purposes. The United States Government explicitly retains all rights to use the SOFTWARE for any purpose, to have it used on the Government’s behalf or to allow others to use it.
Tourette Syndrome
Diagnosis > Tourette Syndrome
Resource is related to or associated with application to Tourette Syndrome. Tourette syndrome (TS) is a neurological disorder characterized by repetitive, stereotyped, involuntary movements and vocalizations called tics. See also http://www.ninds.nih.gov/disorders/tourette/tourette.htm MESH_UID: D005879
Tractography
Category > Software > Application > Tractography
Software application for the generation of 'tractography', spatial representations of tract (fiber, other) trajectory.
Tractography has one sub-entry: Fiber Tracking.
Training
Category > Hardware > Training
Hardware resource that supports subject training and compliance with the experimental procedures. Examples include MRI simulators, head motion stability training, etc.
Transcranial Magnetic Stimulation (TMS)
Category > Hardware > Physiological Stimulation > Transcranial Magnetic Stimulation (TMS)
Resource for TMS. http://en.wikipedia.org/wiki/Transcranial_magnetic_stimulation
Transcriptomics
Category > Software > Application > Genomic Analysis > Other Omics > Transcriptomics
Software that extracts information relative to the transcriptome. The study of the transcriptome, which is the set of all RNA molecules, including mRNA, rRNA, tRNA, and other non-coding RNA produced in one or a population of cells. See http://en.wikipedia.org/wiki/Transcriptome
Transfer Entropy Analysis
Category > Software > Application > Connectivity Analysis > Transfer Entropy Analysis
A resource that performs Transfer Entropy analysis.
Tri-linear
Category > Software > Application > Spatial Transformation > Resampling > Tri-linear
Software application that performs image resampling using 'Tri-linear' interpolation.
TurtleSeg License
License > Other/Proprietary License > TurtleSeg License
By clicking the “Agree” button below and installing TurtleSeg, you or the company you represent (“You”) agree to the terms and conditions of this license agreement. You agree to use TurtleSeg for non-commercial use only and to use TurtleSeg on a single computer at a single location. You will not, and will not authorize any third party to: a) make copies of TurtleSeg, other than a single backup copy, and any such copy together with the original must be kept in your possession or control. You shall reproduce and include all copyright notices on any backup copy; b) modify, improve, further develop, adapt, decompile, disassemble, translate into another computer language, create derivative works, or otherwise reverse engineer the TurtleSeg without the written permission of the TurtleSeg Team; c) distribute, sell, lease, transfer, assign, trade, rent or publish TurtleSeg or any part thereof and/ or copies thereof, to others; d) license or sublicense the use of TurtleSeg to others without the written permission of the TurtleSeg team at SFU and UBC; TurtleSeg is free for non-commercial use for 1 year. For commercial use, a commercial license must be requested by contacting the TurtleSeg team. See http://www.turtleseg.org/index.php?page=contact . If you use the TurtleSeg software in your work, you must acknowledge it by citing www.TurtleSeg.org and the MICCAI MCV and CMIG papers. See http://www.turtleseg.org/index.php?page=publications . The TurtleSeg team holds the copyrights for the TurtleSeg product. This license agreement is in force until terminated. This License may be terminated immediately by the TurtleSeg Team if You breach any term of this license agreement. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. TurtleSeg depends on the BSD licensed libraries ITK and VTK from Kitware and on the LGPL 2.1 licensed library, Qt from Nokia. The remainder of this terms of use document contains the ITK, VTK, and Qt licenses. TurtleSeg depends on the BSD licensed library, ITK from Kitware. TurtleSeg depends on the BSD licensed library, VTK from Kitware. TurtleSeg depends on the LGPL 2.1 licensed library, Qt from Nokia.
Two Dimensional Display
Category > Software > Application > Visualization > Image Display > Two Dimensional Display
Software application for visualization of images in 'Two Dimensions'.
UA_VLAB licence
License > Other/Proprietary License > UA_VLAB licence
The University of Antwerp (UAntwerp) has created a DTI Rat Brain Atlas, a proprietary work the content of which may or may not include third-party proprietary graphic images The use of the DTI Rat Brain Atlas is subject to the following conditions. By downloading the DTI Rat Brain Atlas, you (“the User”) agree to abide by the terms of use described in this notice. If you do not agree to abide by these terms of use, do not download the DTI Rat Brain Atlas. 1. The user is authorized to view, download and use the DTI Rat Brain Atlas for academic purposes only. This authorization is not a transfer of any rights in the materials other than those expressly granted. 2. The User shall not reproduce, modify, abridge, condense, translate, adapt, recast, or otherwise create derivative works from the DTI Rat Brain Atlas in any manner or form, including but not limited to any minor or significant change in wording, organization, format, resolution or visual layout of the DTI Rat Brain Atlas. 3. The User shall not remove, or disassociate, from the DTI Rat Brain Atlas any copyright or other proprietary notices contained in the DTI Rat Brain Atlas. 4. The User is expressly prohibited from distributing, disseminating, licensing of any kind from the DTI Rat Brain Atlas or any portion thereof, whether for commercial use or for the benefit of any third parties. 5. The DTI Rat Brain Atlas is provided "AS IS" without any expressed or implied warranty of any kind. In no event will UAntwerp and/or the author be liable to any party for any direct, indirect, special or other consequential damages resulting from the use of the DTI Rat Brain Atlas. The non-liability covers, without limitation, any lost profits, business interruption, loss of programs or other data on User’s information system or otherwise, even if UA and/or author has been advised of the possibility of such damages. 6. The User shall acknowledge UAntwerp's contribution and any third-party copyrights so indicated in providing the DTI Rat Brain Atlas in any publication it may make and cite the relevant publication [Veraart J et al (2011) “Population-averaged diffusion tensor imaging atlas of the Sprague Dawley rat brain”, NeuroImage 58(4) 975-983].
UCSF NCL Software License
License > Other/Proprietary License > UCSF NCL Software License
UCSF NCL Software Library, Release 1.0 (c) 2011, University of California San Francisco (the "Software") The Software remains the property of the University of California San Francisco ("the University"). The Software is distributed "AS IS" under this Licence solely for non-commercial use in the hope that it will be useful, but in order that the University as a charitable foundation protects its assets for the benefit of its educational and research purposes, the University makes clear that no condition is made or to be implied, nor is any warranty given or to be implied, as to the accuracy of the Software, or that it will be suitable for any particular purpose or for use under any specific conditions. Furthermore, the University disclaims all responsibility for the use which is made of the Software. It further disclaims any liability for the outcomes arising from using the Software. The Licensee agrees to indemnify the University and hold the University harmless from and against any and all claims, damages and liabilities asserted by third parties (including claims for negligence) which arise directly or indirectly from the use of the Software or the sale of any products based on the Software. No part of the Software may be reproduced, modified, transmitted or transferred in any form or by any means, electronic or mechanical, without the express permission of the University. The permission of the University is not required if the said reproduction, modification, transmission or transference is done without financial return, the conditions of this Licence are imposed upon the receiver of the product, and all original and amended source code is included in any transmitted product. You may be held legally responsible for any copyright infringement that is caused or encouraged by your failure to abide by these terms and conditions. You are not permitted under this Licence to use this Software commercially. Use for which any financial return is received shall be defined as commercial use, and includes (1) integration of all or part of the source code or the Software into a product for sale or license by or on behalf of Licensee to third parties or (2) use of the Software or any derivative of it for research with the final aim of developing software products for sale or license to a third party or (3) use of the Software or any derivative of it for research with the final aim of developing non-software products for sale or license to a third party, or (4) use of the Software to provide any service to an external organisation for which payment is received. If you are interested in using the Software commercially, please contact UCSF Office of Technology Management (OTM) http://otm.ucsf.edu/ to negotiate a license. Related software packages: FSL: http://www.fmrib.ox.ac.uk/fsl/fsl/licence.html ICASSO: http://research.ics.tkk.fi/ica/icasso/ FastICA: http://research.ics.tkk.fi/ica/fastica/ Infomax ICA: http://cnl.salk.edu/~tony/ica.html
Unfiltered
Category > Software > Application > Image Reconstruction > Tomography > Back Projection > Unfiltered
Software application for the reconstruction of tomographic images using 'Unfiltered' back-projection techniques.
Unix Shell
Programming Language > Unix Shell
A scripting interface to the Unix operating system. Also referred to as "command line." Use this category unless a more specific shell is required.
Unix Shell has the following sub-entries: csh/tcsh, Other, and sh/bash.
V3D License 2010-April
License > Other/Proprietary License > V3D License 2010-April
You will have to agree the following terms, before downloading/using/running/editing/changing any portion of codes in this package. 1. This package is free for non-profit research, but needs a special license for any commercial purpose. Please contact Hanchuan Peng for details. 2. You agree to appropriately cite this work in your related studies and publications. 3. This software is provided by the copyright holders (Hanchuan Peng), Howard Hughes Medical Institute, Janelia Farm Research Campus, and contributors "as is" and any express or implied warranties, including, but not limited to, any implied warranties of merchantability, non-infringement, or fitness for a particular purpose are disclaimed. In no event shall the copyright owner, Howard Hughes Medical Institute, Janelia Farm Research Campus, or contributors be liable for any direct, indirect, incidental, special, exemplary, or consequential damages (including, but not limited to, procurement of substitute goods or services; loss of use, data, or profits; reasonable royalties; or business interruption) however caused and on any theory of liability, whether in contract, strict liability, or tort (including negligence or otherwise) arising in any way out of the use of this software, even if advised of the possibility of such damage. 4. Neither the name of the Howard Hughes Medical Institute, Janelia Farm Research Campus, nor Hanchuan Peng, may be used to endorse or promote products derived from this software without specific prior written permission.
VANDPIRE software license agreement
License > Other/Proprietary License > VANDPIRE software license agreement
NON-EXCLUSIVE ACADEMIC SOFTWARE LICENSE AGREEMENT PLEASE READ THE FOLLOWING AGREEMENT CAREFULLY. BY INSTALLING, COPYING, DOWNLOADING, ACCESSING OR OTHERWISE USING THE SOFTWARE PRODUCT, YOU INDICATE YOUR ACCEPTANCE OF THESE TERMS AND CONDITIONS AND AGREE TO BE BOUND AS SET FORTH HEREIN. YOU REPRESENT AND WARRANT THAT YOU HAVE THE REQUISITE AUTHORITY AND LEGAL CAPACITY TO BIND YOUR ORGANIZATION TO THIS AGREEMENT. THE LICENSE IS FOR USE BY ACADEMIC NOT-FOR PROFIT INSTITUTIONS AND BY ACCEPTING THESE TERMS AND CONDITIONS, YOU ARE REPRESENTING THAT YOUR INSTITUTION MEETS THE CRITERIA OF A NOT-FOR-PROFIT INSTITUTION. This License Agreement ("Agreement") is entered into between Vanderbilt University, a private, non-profit institution of higher education in Nashville, Tennessee with offices at 1207 17th Avenue South, Suite 105, Nashville, Tennessee 37212 ("Vanderbilt") and the person representing the non-profit research and/or academic institution that registers to use the Software ("Licensee"). Prior to such registration in accordance with this Agreement, the Licensee shall have no rights or license in connection with the Software or this Agreement. THE SOFTWARE IS PROVIDED AS-IS, FOR INFORMATIONAL PURPOSES ONLY, AND SHOULD NOT BE USED FOR DIAGNOSTIC OR TREATMENT PURPOSES. Definitions "Agreement" means this Non-Exclusive Academic Software License Agreement. "Effective Date" means the latest date upon which this Agreement is either entered into or renewed. "Licensing Contact" means the individual identified on the Registration Page and who shall be responsible for administering this Agreement on behalf of the Licensee. "Modifications" mean any changes or extensions introduced into the Software or otherwise based on or derived from the Software source statements by Vanderbilt. Modifications include, but are not limited to, corrections of program errors, translations and stylistic restructuring of the Software, addition or deletion of functions or enhancement of existing functions of the Software, changes or additions required to integrate the Software into other applications or to allow the Software to run under alternative operating systems or computer hardware configurations, and other adaptations of the Software. Licensee shall not make any Modifications. "Registration Page" means the portion of the web site used by Licensees to enter information permitting the licensing of the Software. "Software" means the current versions of the VANDPIRE software provided to Licensee, as available on the Effective Date for which the Licensee desires to obtain licenses as well as any Modifications made to the Software. 1. Grant Commencing on the Effective Date, and provided that Licensee abides by the terms of this Agreement, Vanderbilt hereby grants, and Licensee accepts, a limited, non-exclusive, non-transferable license to use the Software on a single machine, and to make such copies of the Software in original or modified form as are necessary for such use (but in no event may the Software be used concurrently on more than one machine). Licensee shall under no circumstances analyze for composition, structure, reverse engineer or decompile the Software or attempt to do so. These Grants are limited to Licensee’s use and does not authorize use of the Software by third parties or by anyone via the Internet or any other means. Licensee shall obtain no ownership in the Software under this Agreement, and with the exception of applying Vanderbilt-provided Modifications (or "updates"), shall not modify the Software or the accompanying documentation in any way, for any reason. Licensee shall not distribute, publish, or otherwise transfer or allow to be transferred, the Software or copies thereof, in whole or in part, without prior written permission of Vanderbilt. Licensee acknowledges and agrees that Vanderbilt Software (including Modifications) contains valuable proprietary information and trade secrets developed, licensed or acquired by Vanderbilt. 2. Use of Names Licensee shall not use the name "Vanderbilt University" or any abbreviation thereof, or the names of any Vanderbilt personnel or identifiers of the Software without prior written approval from Vanderbilt. 3. Updates Vanderbilt may provide updates to the Software, in Vanderbilt’s sole discretion, on an "as available" basis during the term of this Agreement. 4. Term This Agreement shall remain effective unless terminated as provided herein. 5. Termination This Agreement will terminate without further action by or notice from Vanderbilt for any future period for which Licensee has not abided by the terms of this Agreement including, but not limited to, the provisions of Section 6. Licensee may terminate this Agreement at any time upon written notice to Vanderbilt. Vanderbilt may terminate this Agreement immediately upon notice if Licensee is in breach of this Agreement. The provisions under which this Agreement may be terminated will be in addition to any and all other legal remedies which either party may have for the enforcement of any and all terms hereof, and do not in any way limit any other legal remedy such party may have. Termination of this Agreement will terminate all rights and licenses granted to Licensee herein. Licensee shall certify in writing to Vanderbilt within ten (10) days after Termination Date that the Software has been destroyed. 6. Licensee Status and Obligations (a) This "Non-Exclusive Academic Software License Agreement" shall be available only to non-profit academic and/or research institutions who use the Software solely for research purposes, and not for any diagnostic or treatment purposes, and provided that such Licensee abides by the terms of this Agreement including, but not limited to, the provisions of this Section 6. In the event Licensee wishes to obtain a commercial use license, Licensee must contact Vanderbilt’s Center for Technology Transfer and Commercialization, 1207 17th Avenue South, Suite 105, Nashville, Tennessee 37212. (b) Licensee shall: (i) Not modify the Software or written materials or documentation related to the Software in any way. In particular, all Vanderbilt copyright, trademark, or other notices contained in the Software or written materials or documentation must be maintained by Licensee. (ii) Abide by all other licenses embedded within the Software and necessary for its operation as described in the files located in the ‘license_files’ directory included with the Software. (iii) Provide the developers of the Software at Vanderbilt with comprehensive feedback on the use of the Software in Licensee’s research which information Vanderbilt shall be permitted to use in evaluating and making changes to the Software. All bug reports and technical questions shall be sent to the developers of the Software. (iv) Acknowledge in its publications relating to their research utilizing the Software the contributions made by Vanderbilt and the Software. 7. Amendment of this Agreement Vanderbilt may amend this Agreement, in its sole and absolute discretion, at any time or from time-to-time during the Term. 8. Disclaimers ... (cannot show due to character limit) 9. Indemnification ... 10. Compliance with Laws. ... 11. Notices. ... 12. General ... This Agreement embodies the entire understanding of the parties and supersedes all previous communications, representations, or understandings, either oral or written, between the parties relating to the subject matter hereof.
Velocity Analysis
Category > Software > Application > Temporal Transformation > Velocity Analysis
Software application that performs temporal transformation for 'Velocity Analysis'.
Visual Basic
Programming Language > Visual Basic
High-level event driven programming language developed by Microsoft. Has since been replaced by Visual Basic .NET.
Visualization
Category > Software > Application > Visualization
Software application for the 'Visualization' of information. Visualization can be electronic, print, or other viewable media.
Visualization has the following sub-entries: Animation, Image Display, Rendering, Splines, and Vitual Endoscopy.
Vitual Endoscopy
Category > Software > Application > Visualization > Vitual Endoscopy
Software for creation of visualizations of the type that simulate an endoscopic view.
volBrain is free for non-commercial and non-medical purposes
License > Other/Proprietary License > volBrain is free for non-commercial and non-medical purposes
see: http://volbrain.upv.es/terms.php
Volume
Category > Software > Application > Temporal Transformation > Temporal Curve Fitting > Haemodynamic Response > Perfusion > Volume
Software application that performs temporal curve fitting for haemodynamic characterization of perfusion blood 'Volume'.
Volume Measurement
Category > Software > Application > Quantification > Volumetric Analysis > Volume Measurement
Software application for the quantification of the volumetric property of 'Volume'.
Volume Rendering
Category > Software > Application > Visualization > Rendering > Volume Rendering
Software application for visualization using 'Volume Rendering'.
Volumetric Analysis
Category > Software > Application > Quantification > Volumetric Analysis
Software application for the quantification of 'Volumetric Analysis'.
Volumetric Analysis has the following sub-entries: Center of Mass, Moments of Inertia, and Volume Measurement.
Volumetric Analysis
Category > Software > Application > Segmentation > Volumetric Analysis
Segmentation for the purposes of 'Volumetric Analysis'.
VRML
Supported Data Format > VRML
Virtual Reality Modeling Language: http://www.web3d.org/x3d/vrml/.
Warping
Category > Software > Application > Spatial Transformation > Warping
Software application that performs image spatial transformation of 'Warping' type.
Warping has the following sub-entries: Affine Warp, Linear Warp, Nonlinear Warp, and Piece-wise Linear Warp.
Wavelet Transformation
Category > Software > Application > Spatial Transformation > Wavelet Transformation
Software application that performs image spatial transformation using 'Wavelet Transformation' technique.
Web Application - Free to use
License > Other/Proprietary License > Web Application - Free to use
Free to use with your own data or provided models and datasets. Free to explore data, usage of partial or complete dataset must have written consent.
Web Environment
Environment > Web Environment
This software is designed for a web environment.
Web Resource
Category > Information Resource > Web Resource
Information delivered over HTTP such as a document or movie.
Web Resource has the following sub-entries: Other Web Resource, Web Service, and Websites.
Web Service
Category > Information Resource > Web Resource > Web Service
Specific functions provided to applications via standard Internet protocols (XML, SOAP, WSDL, UDDI). NeuroLexID: birnlex_2234
Websites
Category > Information Resource > Web Resource > Websites
A collection of web pages stored on the World Wide Web.
WFU ANSIR License
License > Other/Proprietary License > WFU ANSIR License
END-USER LICENSE AGREEMENT FOR WAKE FOREST UNIVERSITY BAPTIST MEDICAL CENTER / HEALTH SCIENCES ADVANCED NEUROSCIENCE IMAGING RESEARCH SOFTWARE DOWNLOADS THIS AGREEMENT CONCERNS YOUR RIGHTS AND OBLIGATIONS - READ IT CAREFULLY: This End-User License Agreement ("EULA") is a legal agreement between you (either an individual or a single legal entity) and WAKE FOREST UNIVERSITY HEALTH SCIENCES (“WFUHS”) for the software product identified above, which includes computer software, databases, related electronic or online documentation, associated electronic storage media and printed materials (all together, the "Software Product" or "Software"). BY DOWNLOADING, INSTALLING, COPYING, OR OTHERWISE USING THE SOFTWARE PRODUCT, YOU AGREE TO BE BOUND BY THE TERMS OF THIS EULA. IF YOU DO NOT AGREE TO THE TERMS OF THIS EULA, YOU ARE NOT AUTHORIZED TO USE THE SOFTWARE PRODUCT. 1. OWNERSHIP AND LICENSE. The Software Product was created by Wake Forest University Health Sciences. The Software Product is licensed to you under this EULA. You have no rights to the Software Product other than as expressly stated in this EULA and as may be available under applicable law. The Software Product is protected by copyright laws and international copyright treaties, as well as other intellectual property laws and treaties. 2. GRANT OF LICENSE. This EULA grants you the following rights: License: This Agreement grants you a non-exclusive, non-commercial right to use the Software Product in its readable or executable format for non-profit research activities only. No other rights to the Software Product are granted. Installation and Use: You may install and use a copy of the Software Product on a single laptop, personal computer, workstation, or MRI scanner. The Software Product may be installed so that it is accessible to multiple users over an intranet. Backup Copies: You may make backup copies of the Software Product for all computers on which you have installed the Software Product. 3. OTHER RIGHTS AND LIMITATIONS. Limitations on Reverse Engineering, Decompilation, and Disassembly: You may not reverse engineer, decompile, or disassemble the Software Product, except and only to the extent that such activity is expressly permitted by applicable law notwithstanding this limitation. Separation of Components: The Software Product is licensed as a single product. Its component parts may not be separated for use on more than one computer. Notices and Markings: You must maintain all copyright notices and other proprietary markings on all copies of the Software Product. Distribution or Transfer: You may not transfer your rights under this EULA. You may not distribute copies of the Software Product to third parties. Rental: You may not rent, lease or lend the Software Product. Termination: Without prejudice to any other rights, Wake Forest University Health Sciences may terminate this EULA if you fail to comply with the terms and conditions of this EULA. In such event, you must destroy all copies of the Software Product and all of its component parts. 4. COPYRIGHT. All title and copyrights in and to the Software Product and any copies of all or parts of the Software Product are owned by the Wake Forest University Health Sciences 5. U.S. GOVERNMENT RESTRICTED RIGHTS. The Software Product and documentation are provided with RESTRICTED RIGHTS. Use, duplication, or disclosure by the Government is subject to restrictions as set forth in subparagraph (c)(1)(ii) of the Rights in Technical Data and Computer Software clause at DFARS 252.227-7013 or subparagraphs (c)(1) and (2) of the Commercial Computer Software Restricted Rights at 48 CFR 52.227-19, as applicable. Manufacturer is Wake Forest University Health Sciences. 6. EXPORT RESTRICTIONS. You agree that you will not export or re-export the Software Product to any country, person, entity or end user to which export or re-export would be restricted under United States export laws and regulations. You warrant and represent that neither the U.S.A. Bureau of Export Administration nor any other federal agency has suspended, revoked or denied your export privileges. 7. NO WARRANTIES. Wake Forest University Health Sciences and the Product Developers expressly disclaim any warranty for the Software Product. THE SOFTWARE PRODUCT AND ANY RELATED DOCUMENTATION IS PROVIDED "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESS OR IMPLIED, INCLUDING, WITHOUT LIMITATION, THE IMPLIED WARRANTIES OR MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, OR NONINFRINGEMENT. Wake Forest University Health Sciences MAKES NO WARRANTY WITH RESPECT TO THE ACCURACY OR COMPLETENESS OF THE SOFTWARE, AND SHALL HAVE NO LIABILITY BASED ON CLAIMS OF ERRORS IN THE SOFTWARE PRODUCT. The entire risk arising out of use or performance of the Software Product remains with you. 8. LIMITATIONS ON DAMAGES. In no event shall Wake Forest University Health Sciences be liable for any damages whatsoever (including, without limitation, damages for loss of life or other pecuniary loss) arising out of the use of or inability to use this Software Product, even if Wake Forest University Health Sciences has been advised of the possibility of such damages. Because some states/jurisdictions do not allow the exclusion or limitation of liability for consequential or incidental damages, the above limitation may not apply to you. IN NO EVENT SHALL THE TOTAL LIABILITY OF WAKE FOREST UNIVERSITY HEALTH SCIENCES, IT'S REPRESENTATIVES, AGENTS, OR SUPPLIERS UNDER THIS AGREEMENT OR OTHERWISE IN CONNECTION WITH THE SOFTWARE PRODUCT, FOR ANY REASON, EXCEED THE AMOUNT OF THE LICENSE FEE PAID BY YOU TO WAKE FOREST UNIVERSITY HEALTH SCIENCES FOR USE OF THE SOFTWARE PRODUCT. 9. MISCELLANEOUS. Wake Forest University Health Sciences is based in and directs its operations from locations in the State of North Carolina, United States of America. This EULA is governed by the laws of the State of North Carolina, without reference to conflict of laws provisions. All legal proceedings relating to the Software Product or the formation or interpretation of this Agreement shall be brought only in the state or federal courts located in Winston Salem, North Carolina, and you hereby expressly submit to the jurisdiction of such courts and consent to extra-territorial service of process.
Win32 (MS Windows)
Environment > Win32 (MS Windows)
Programs designed to run in a graphical Microsoft Windows environment.
Windows
Operating System > Microsoft > Windows
Windows software, not specific to any particular version of Windows.
Windows 3.1 or Earlier
Operating System > Microsoft > Windows > Windows 3.1 or Earlier
Windows 3.1 operating system or earlier.
Windows 95/98/2000
Operating System > Microsoft > Windows > Windows 95/98/2000
Windows 95, Windows 98, or Windows 2000 operating system.
Windows CE
Operating System > Microsoft > Windows > Windows CE
Windows CE operating system.
Windows NT/2000
Operating System > Microsoft > Windows > Windows NT/2000
Windows NT or Windows 2000 operating system.
Windows Vista
Operating System > Microsoft > Windows > Windows Vista
Windows Vista
Windows XP
Operating System > Microsoft > Windows > Windows XP
Windows XP operating system.
Workflow
Category > Software > Application > Workflow
A software application that manages 'workflow'; the sequence of operations upon a data stream. Can include visual monitoring progress and/or construction of workflow specifications.
X11 Applications
Environment > X11 Applications
Programs that run in an X windowing environment.
X11 Applications has two sub-entries: Gnome and KDE.
XNAT License
License > Other/Proprietary License > XNAT License
From http://www.xnat.org/download.html: XNAT Software License Agreement Copyright 2005 Harvard University / Howard Hughes Medical Institute (HHMI) All Rights Reserved This license is between the user (you) and the copyright holders. The license granted in this Agreement includes without limitation the right to (i) incorporate the software ("XNAT") into other proprietary programs (subject to any restrictions applicable to such programs), (ii) add your own copyright statement to your modifications of the software, and (iii) provide additional or different license terms and conditions in your sublicenses of modifications of the software; provided that your use, reproduction and distribution of such modifications otherwise complies with the conditions stated in this Agreement. 1. Redistribution and use, with or without modification, must retain the author's(s') copyright notice(s) as documented in the source code. Redistributions in binary code must reproduce the author's(s') copyright notice(s) as documented in the source code. This list of conditions, the disclaimer in the documentation and/or other materials provided with the distribution must also be retained or reproduced. 2. None of the names, logos, or trademarks of Harvard and HHMI, any Licensor or any of Licensor's affiliates or any of the Contributors may be used to endorse or promote products produced in whole or in part by operation of the software or derived from or based on the software without specific prior written permission from the applicable party. 3. The acknowledgment "This product includes XNAT, developed by Randy Buckner at Harvard University and the Neuroinformatics Research Group at Washington University School of Medicine" shall apply to all copies of complete or substantial portions of the software, including without limitation all source and executable forms, and on any user documentation. 4. The software has been designed for research purposes only and has not been approved for clinical use. It has not been reviewed or approved by the Food and Drug Administration or by any other agency. You acknowledge and agree that clinical applications are neither recommended nor advised. 5. You are responsible for purchasing any external software that may be required for the proper running of this software. You also agree that you are solely responsible for informing your sublicensees, including without limitation your end-users, of their obligations to secure any such required permissions. You further agree that you are solely responsible for determining and divulging the viral nature of any code included in the software. 6. We request that you acknowledge the support of XNAT in publications that utilize the software such as by "This product includes XNAT, developed by Randy Buckner at Harvard University and the Neuroinformatics Research Group at Washington University School of Medicine" and/or by direct citation. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESSED OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE, AND NON-INFRINGEMENT, ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNERS OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. ANY USE, REPRODUCTION OR DISTRIBUTION OF THE SOFTWARE WHICH IS NOT IN ACCORDANCE WITH THIS AGREEMENT SHALL AUTOMATICALLY REVOKE ALL RIGHTS GRANTED TO YOU UNDER THIS AGREEMENT AND RENDER THIS AGREEMENT NULL AND VOID. THIS AGREEMENT DOES NOT GRANT ANY RIGHTS IN OR TO ANY INTELLECTUAL PROPERTY OWNED BY LICENSOR OR ANY CONTRIBUTOR EXCEPT THOSE RIGHTS EXPRESSLY GRANTED HEREUNDER.
XNAT Pipeline
Pipelines and Workflows Supported > XNAT Pipeline
The XNAT Pipelining system.
Zope
Programming Language > Zope
Zope Object Publishing: http://www.zope.org/
1 - Planning
Development Status > 1 - Planning
This resource is in the planning stages only. There is no code.
2 - Pre-Alpha
Development Status > 2 - Pre-Alpha
There is code for this project, but it is not usable except for further development.
3 - Alpha
Development Status > 3 - Alpha
Resource is in early development, and probably incomplete and/or extremely buggy.
3D Slicer License
License > Other/Proprietary License > 3D Slicer License
From: http://www.na-mic.org/Wiki/index.php/Slicer#Slicer_License: Summary: The 3D Slicer software is distributed under a license that is essentially a BSD-style, open source license. The license is an open source license compatible with the definition in opensource.org and contains no restrictions on use of the software. for all the legal specifics, please see the full text below. 3D Slicer Software License Agreement(c) 3D Slicer Contribution and Software License Agreement ("Agreement") Version 1.0 (December 20, 2005) This Agreement covers contributions to and downloads from the 3D Slicer project ("Slicer") maintained by The Brigham and Women's Hospital, Inc. ("Brigham"). Part A of this Agreement applies to contributions of software and/or data to Slicer (including making revisions of or additions to code and/or data already in Slicer). Part B of this Agreement applies to downloads of software and/or data from Slicer. Part C of this Agreement applies to all transactions with Slicer. If you distribute Software (as defined below) downloaded from Slicer, all of the paragraphs of Part B of this Agreement must be included with and apply to such Software. Your contribution of software and/or data to Slicer (including prior to the date of the first publication of this Agreement, each a "Contribution") and/or downloading, copying, modifying, displaying, distributing or use of any software and/or data from Slicer (collectively, the "Software") constitutes acceptance of all of the terms and conditions of this Agreement. If you do not agree to such terms and conditions, you have no right to contribute your Contribution, or to download, copy, modify, display, distribute or use the Software. PART A. CONTRIBUTION AGREEMENT - License to Brigham with Right to Sublicense ("Contribution Agreement"). 1. As used in this Contribution Agreement, "you" means the individual contributing the Contribution to Slicer and the institution or entity which employs or is otherwise affiliated with such individual in connection with such Contribution. 2. This Contribution Agreement applies to all Contributions made to Slicer, including without limitation Contributions made prior to the date of first publication of this Agreement. If at any time you make a Contribution to Slicer, you represent that (i) you are legally authorized and entitled to make such Contribution and to grant all licenses granted in this Contribution Agreement with respect to such Contribution; (ii) if your Contribution includes any patient data, all such data is de-identified in accordance with U.S. confidentiality and security laws and requirements, including but not limited to the Health Insurance Portability and Accountability Act (HIPAA) and its regulations, and your disclosure of such data for the purposes contemplated by this Agreement is properly authorized and in compliance with all applicable laws and regulations; and (iii) you have preserved in the Contribution all applicable attributions, copyright notices and licenses for any third party software or data included in the Contribution. 3. Except for the licenses granted in this Agreement, you reserve all right, title and interest in your Contribution. 4. You hereby grant to Brigham, with the right to sublicense, a perpetual, worldwide, non-exclusive, no charge, royalty-free, irrevocable license to use, reproduce, make derivative works of, display and distribute the Contribution. If your Contribution is protected by patent, you hereby grant to Brigham, with the right to sublicense, a perpetual, worldwide, non-exclusive, no-charge, royalty-free, irrevocable license under your interest in patent rights covering the Contribution, to make, have made, use, sell and otherwise transfer your Contribution, alone or in combination with any other code. 5. You acknowledge and agree that Brigham may incorporate your Contribution into Slicer and may make Slicer available to members of the public on an open source basis under terms substantially in accordance with the Software License set forth in Part B of this Agreement. You further acknowledge and agree that Brigham shall have no liability arising in connection with claims resulting from your breach of any of the terms of this Agreement. 6. YOU WARRANT THAT TO THE BEST OF YOUR KNOWLEDGE YOUR CONTRIBUTION DOES NOT CONTAIN ANY CODE THAT REQURES OR PRESCRIBES AN "OPEN SOURCE LICENSE" FOR DERIVATIVE WORKS (by way of non-limiting example, the GNU General Public License or other so-called "reciprocal" license that requires any derived work to be licensed under the GNU General Public License or other "open source license"). PART B. DOWNLOADING AGREEMENT - License from Brigham with Right to Sublicense ("Software License"). 1. As used in this Software License, "you" means the individual downloading and/or using, reproducing, modifying, displaying and/or distributing the Software and the institution or entity which employs or is otherwise affiliated with such individual in connection therewith. The Brigham and Women?s Hospital, Inc. ("Brigham") hereby grants you, with right to sublicense, with respect to Brigham's rights in the software, and data, if any, which is the subject of this Software License (collectively, the "Software"), a royalty-free, non-exclusive license to use, reproduce, make derivative works of, display and distribute the Software, provided that: (a) you accept and adhere to all of the terms and conditions of this Software License; (b) in connection with any copy of or sublicense of all or any portion of the Software, all of the terms and conditions in this Software License shall appear in and shall apply to such copy and such sublicense, including without limitation all source and executable forms and on any user documentation, prefaced with the following words: "All or portions of this licensed product (such portions are the "Software") have been obtained under license from The Brigham and Women's Hospital, Inc. and are subject to the following terms and conditions:" (c) you preserve and maintain all applicable attributions, copyright notices and licenses included in or applicable to the Software; (d) modified versions of the Software must be clearly identified and marked as such, and must not be misrepresented as being the original Software; and (e) you consider making, but are under no obligation to make, the source code of any of your modifications to the Software freely available to others on an open source basis. 2. The license granted in this Software License includes without limitation the right to (i) incorporate the Software into proprietary programs (subject to any restrictions applicable to such programs), (ii) add your own copyright statement to your modifications of the Software, and (iii) provide additional or different license terms and conditions in your sublicenses of modifications of the Software; provided that in each case your use, reproduction or distribution of such modifications otherwise complies with the conditions stated in this Software License. 3. This Software License does not grant any rights with respect to third party software, except those rights that Brigham has been authorized by a third party to grant to you, and accordingly you are solely responsible for (i) obtaining any permissions from third parties that you need to use, reproduce, make derivative works of, display and distribute the Software, and (ii) informing your sublicensees, including without limitation your end-users, of their obligations to secure any such required permissions. 4. The Software has been designed for research purposes only and has not been reviewed or approved by the Food and Drug Administration or by any other agency. YOU ACKNOWLEDGE AND AGREE THAT CLINICAL APPLICATIONS ARE NEITHER RECOMMENDED NOR ADVISED. Any commercialization of the Software is at the sole risk of the party or parties engaged in such commercialization. You further agree to use, reproduce, make derivative works of, display and distribute the Software in compliance with all applicable governmental laws, regulations and orders, including without limitation those relating to export and import control. 5. The Software is provided "AS IS" and neither Brigham nor any contributor to the software (each a "Contributor") shall have any obligation to provide maintenance, support, updates, enhancements or modifications thereto. BRIGHAM AND ALL CONTRIBUTORS SPECIFICALLY DISCLAIM ALL EXPRESS AND IMPLIED WARRANTIES OF ANY KIND INCLUDING, BUT NOT LIMITED TO, ANY WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL BRIGHAM OR ANY CONTRIBUTOR BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT, SPECIAL, INCIDENTAL, EXEMPLARY OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY ARISING IN ANY WAY RELATED TO THE SOFTWARE, EVEN IF BRIGHAM OR ANY CONTRIBUTOR HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES. TO THE MAXIMUM EXTENT NOT PROHIBITED BY LAW OR REGULATION, YOU FURTHER ASSUME ALL LIABILITY FOR YOUR USE, REPRODUCTION, MAKING OF DERIVATIVE WORKS, DISPLAY, LICENSE OR DISTRIBUTION OF THE SOFTWARE AND AGREE TO INDEMNIFY AND HOLD HARMLESS BRIGHAM AND ALL CONTRIBUTORS FROM AND AGAINST ANY AND ALL CLAIMS, SUITS, ACTIONS, DEMANDS AND JUDGMENTS ARISING THEREFROM. 6. None of the names, logos or trademarks of Brigham or any of Brigham's affiliates or any of the Contributors, or any funding agency, may be used to endorse or promote products produced in whole or in part by operation of the Software or derived from or based on the Software without specific prior written permission from the applicable party. 7. Any use, reproduction or distribution of the Software which is not in accordance with this Software License shall automatically revoke all rights granted to you under this Software License and render Paragraphs 1 and 2 of this Software License null and void. 8. This Software License does not grant any rights in or to any intellectual property owned by Brigham or any Contributor except those rights expressly granted hereunder. PART C. MISCELLANEOUS This Agreement shall be governed by and construed in accordance with the laws of The Commonwealth of Massachusetts without regard to principles of conflicts of law. This Agreement shall supercede and replace any license terms that you may have agreed to previously with respect to Slicer.
4 - Beta
Development Status > 4 - Beta
Resource is in late phases of development. Deliverables are essentially complete, but may still have significant bugs.
5 - Production/Stable/Mature
Development Status > 5 - Production/Stable/Mature
Deliverables are complete and usable by the intended audience.