Browse tools by functionality

  1. Atlas Application (33)
  2. Connectivity Analysis (12)
  3. Database Application (19)
  4. Experimental Control (8)
  5. Format Conversion (17)
  6. Genomic Analysis (1)
  7. Image Reconstruction (13) »
    1. » Tomography (1)
  8. Information Theory (3)
  9. Modeling (60) »
    1. » Finite Element Analysis (2)
    2. » Forward - Inverse (18)
    3.    » EEG Modeling (12)
    4.    » MEG Modeling (11)
    5. » Mesh Generation (10)
    6. » Model Generation (2)
    7. » Monte Carlo (4)
    8. » Random Walk (1)
    9. » Simulation (5)
    10. » Super Tensor (5)
    11.    » Diffusion Spectrum (3)
    12.    » Q-Ball (4)
    13. » Tensor Metric (14)
    14.    » Direction (1)
  10. Quantification (48) »
    1. » Morphology (11)
    2. » Neuronal Characterization (1)
    3. » Overlap Metrics (2)
    4.    » DICE Coefficient (1)
    5.    » Tanomoto Coefficient (1)
    6. » Position (3)
    7. » Quantitative Shape Analysis (5)
    8. » Volumetric Analysis (20)
    9.    » Center of Mass (1)
    10.    » Volume Measurement (8)
  11. Segmentation (57) »
    1. » Active Contour (4)
    2. » Expectation Minimization (2)
    3. » Intensity Contour (2)
    4. » KMeans (1)
    5. » Manual (4)
    6. » Neural Network (1)
    7. » Quality Metrics (2)
    8. » Region Growing (5)
    9.    » Constrained Region Growing (2)
    10. » Region of Interest (18)
    11.    » Labeling (11)
    12. » Volumetric Analysis (11)
  12. Shape Analysis (13) »
    1. » Medial Axis (1)
    2. » Shape Decomposition (3)
    3.    » Spherical Harmonics (3)
  13. Spatial Transformation (58) »
    1. » Artifact Removal (11)
    2. » Colocalization (1)
    3. » Frequency Domain (6)
    4.    » Filtering (4)
    5.    » Fourier Transform (1)
    6. » Intensity Operations (4)
    7.    » Intensity Non-uniformity Correction (3)
    8. » Quality Metrics (7)
    9. » Registration (35)
    10.    » Fiducial (1)
    11.    » Image-to-Image (17)
    12.    » Image-to-Template (8)
    13. » Resampling (19)
    14.    » Sinc Function Interpolation (1)
    15.    » Spline Interpolation (3)
    16.    » Tri-linear (1)
    17. » Spatial Convolution - Deconvolution (2)
    18. » Warping (15)
    19.    » Affine Warp (5)
    20.    » Linear Warp (1)
    21.    » Nonlinear Warp (7)
    22. » Wavelet Transformation (1)
  14. Statistical Operation (64) »
    1. » Discriminant Analysis (3)
    2. » Independent Component Analysis (15)
    3. » Multivariate Analysis (9)
    4. » Principal Component Analysis (12)
    5. » Regression (22)
    6.    » Linear (14)
    7.    » Nonlinear (3)
  15. Surface Analysis (17) »
    1. » Curvature (2)
    2.    » Gaussian Curvature (2)
    3.    » Mean Curvature (2)
    4. » Thickness (5)
  16. Temporal Transformation (30) »
    1. » Fourier Time-domain Analysis (8)
    2. » Motion Analysis (4)
    3. » Spectral Analysis (12)
    4. » Temporal Convolution - Deconvolution (2)
    5. » Temporal Curve Fitting (3)
    6.    » Haemodynamic Response (3)
    7. » Temporal Integration (1)
    8. » Temporal Wavelet Analysis (2)
  17. Time Domain Analysis (24) »
    1. » ANOVA (2)
    2. » Correlation (5)
    3.    » Autocorrelation (1)
    4.    » Cross-correlation (2)
  18. Tractography (32) »
    1. » Fiber Tracking (19)
    2.    » Diffusion MR Fiber Tracking (14)
  19. Visualization (87) »
    1. » Animation (8)
    2. » Image Display (42)
    3.    » Clipping (4)
    4.    » Three Dimensional Display (19)
    5.    » Two Dimensional Display (15)
    6. » Rendering (28)
    7.    » Surface Rendering (19)
    8.    » Volume Rendering (11)
  20. Workflow (35)

Examples:
  • • modeling OR simulation
  • • morphology AND animation
  • • segmentation NOT Linux
  • • "region of interest"
HBM Hackathon

Featured tool/resource:

HBM Hackathon

Open Brain Mapping at the 1st HBM Hackathon: Open Brain Mapping in the Cloud Concurrent with the 2013 OHBM Annual Meeting in Seattle (June 16-20, 2013), the HBM Hackathon is a meeting-long event whos goals are to accelerate the development of a critical mass of cloud-based data, analytic, and computational resources for human brain mapping, and to provide OHBM attendees with access to and knowledge about them. The event is being supported by a broad spectrum of partners from the open neuroimaging community, making it possible to allow an unprecedented degree of access to key resources in the field, including the Allen Human Brain Atlas, the first data release of the Human Connectome Project, the NITRC Computational Environment, and more. Experts from the Allen Institute, Amazon Web Services, Human Connectome Project, NITRC, INCF, LONI, NDAR, BIRN, and others will bring their expertise on-venue.

Latest News

[NITRC Community • Jun 17 • no comments]

NITRC at OHBM Booth 122 and Hackathon!

Come see the NITRC team at the Organization for Human Brain Mapping's 19th Annual Meeting in Seattle, June 17-20, 2013. We will be in Booth 122 and are ready to demo new updates to the web site, showcase the NITRC's Computational Environment on AWS MarketPlace,...

[Conferences, Workshops and Meetings • Jun 13 • no comments]

Brainstorm course at HBM

The next Brainstorm course will take place after the HBM conference in Seattle, on June 21st. It will be a full-day hands-on training session accessible to beginners, illustrating the complete analysis of a MEG recording session: from co-registration...

[The Neuro Bureau • Jun 11 • no comments]

Grunge Gala and Brain-Art Competition at OHBM

In the tradition of past Neuro Bureau gala events in Barcelona, Quebec City, and Beijing, we are excited to announce the upcoming Grunge Gala (Smells like brain spirit!) next week at the OHBM conference in Seattle. The party will be held on Monday, June...

[HCP WU-Minn Consortium • Jun 7 • no comments]

Human Connectome Project Data Release and new Pipeline

On June 11, 2013, HCP will release the Q2 datasets (68 subjects scanned between December, 2012 and February, 2013). All preprocessing of the Q2 data was done using Version 2 of the preprocessing pipelines. Version 2 includes a number of refinements...

[Robust Brain Extraction (ROBEX) • May 22 • no comments]

Robust Brain Extraction (ROBEX) Version 1.1 released!

We have released ROBEX 1.1. The main change in this version is that ROBEX does not depend on the random forest library anymore, and therefore it is now completely BSD. Other updates: - ROBEX is now called from a wrapper such that it is not required...

[Computational Morphometry Toolkit (CMTK) • May 17 • no comments]

CMTK 2.3.0 released

We are pleased to announce the release of CMTK 2.3.0, which brings a number of bug fixes as well as a vastly improved tool for detection and quantification of the ADNI imaging phantom. This will work even in many cases when the phantom itself is defective. CMTK...

[HBM Hackathon • May 6 • no comments]

Open Brain Mapping at the 1st HBM Hackathon

OHBM 2013 is only six weeks away, bringing the brain mapping community to Seattle, a city at the forefront of open neuroscience and information technology. The Local Organizing Committee, the Allen Institute for Brain Science, and Amazon Web Services...

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