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  1. Atlas Application (27)
  2. Connectivity Analysis (4)
  3. Database Application (15)
  4. Experimental Control (8)
  5. Format Conversion (14)
  6. Image Reconstruction (11) »
    1. » Tomography (1)
  7. Information Theory (2)
  8. Modeling (54) »
    1. » Finite Element Analysis (1)
    2. » Forward - Inverse (15)
    3.    » EEG Modeling (10)
    4.    » MEG Modeling (9)
    5. » Mesh Generation (10)
    6. » Model Generation (2)
    7. » Monte Carlo (4)
    8. » Random Walk (1)
    9. » Simulation (5)
    10. » Super Tensor (3)
    11.    » Diffusion Spectrum (2)
    12.    » Q-Ball (3)
    13. » Tensor Metric (12)
  9. Quantification (44) »
    1. » Morphology (10)
    2. » Neuronal Characterization (1)
    3. » Overlap Metrics (2)
    4.    » DICE Coefficient (1)
    5.    » Tanomoto Coefficient (1)
    6. » Position (3)
    7. » Quantitative Shape Analysis (4)
    8. » Volumetric Analysis (20)
    9.    » Center of Mass (1)
    10.    » Volume Measurement (7)
  10. Segmentation (48) »
    1. » Active Contour (3)
    2. » Expectation Minimization (2)
    3. » Intensity Contour (2)
    4. » KMeans (1)
    5. » Manual (1)
    6. » Neural Network (1)
    7. » Quality Metrics (2)
    8. » Region Growing (2)
    9.    » Constrained Region Growing (2)
    10. » Region of Interest (16)
    11.    » Labeling (10)
    12. » Volumetric Analysis (8)
  11. Shape Analysis (11) »
    1. » Medial Axis (1)
    2. » Shape Decomposition (3)
    3.    » Spherical Harmonics (3)
  12. Spatial Transformation (53) »
    1. » Artifact Removal (11)
    2. » Colocalization (1)
    3. » Frequency Domain (5)
    4.    » Filtering (3)
    5.    » Fourier Transform (1)
    6. » Intensity Operations (3)
    7.    » Intensity Non-uniformity Correction (2)
    8. » Quality Metrics (6)
    9. » Registration (32)
    10.    » Fiducial (1)
    11.    » Image-to-Image (17)
    12.    » Image-to-Template (9)
    13. » Resampling (18)
    14.    » Nearest Neighbor (1)
    15.    » Sinc Function Interpolation (1)
    16.    » Spline Interpolation (4)
    17.    » Tri-linear (2)
    18. » Spatial Convolution - Deconvolution (1)
    19. » Warping (14)
    20.    » Affine Warp (6)
    21.    » Linear Warp (1)
    22.    » Nonlinear Warp (7)
    23. » Wavelet Transformation (1)
  13. Statistical Operation (58) »
    1. » Discriminant Analysis (3)
    2. » Independent Component Analysis (13)
    3. » Principal Component Analysis (11)
    4. » Regression (22)
    5.    » Linear (14)
    6.    » Nonlinear (3)
  14. Surface Analysis (15) »
    1. » Curvature (2)
    2.    » Gaussian Curvature (2)
    3.    » Mean Curvature (2)
    4. » Thickness (4)
  15. Temporal Transformation (25) »
    1. » Fourier Time-domain Analysis (5)
    2. » Motion Analysis (4)
    3. » Spectral Analysis (8)
    4. » Temporal Convolution - Deconvolution (2)
    5. » Temporal Curve Fitting (3)
    6.    » Haemodynamic Response (3)
    7. » Temporal Integration (1)
    8. » Temporal Wavelet Analysis (1)
  16. Time Domain Analysis (28) »
    1. » ANOVA (2)
    2. » Correlation (5)
    3.    » Autocorrelation (1)
    4.    » Cross-correlation (2)
    5. » Multivariate Analysis (9)
  17. Tractography (30) »
    1. » Fiber Tracking (18)
    2.    » Diffusion MR Fiber Tracking (14)
  18. Visualization (78) »
    1. » Animation (6)
    2. » Image Display (40)
    3.    » Clipping (2)
    4.    » Three Dimensional Display (15)
    5.    » Two Dimensional Display (11)
    6. » Rendering (26)
    7.    » Ray Tracing (1)
    8.    » Surface Rendering (16)
    9.    » Volume Rendering (8)
  19. Workflow (33)

Examples:
  • • modeling OR simulation
  • • morphology AND animation
  • • segmentation NOT Linux
  • • "region of interest"
EEGLAB

Featured tool/resource:

EEGLAB

EEGLAB is to date the most popular EEG/MEG/ECoG software with about 100,000 download worldwide since 2003. EEGLAB provides an interactive graphic user interface (GUI) allowing users to flexibly and interactively process their high-density EEG and other dynamic brain data using independent component analysis (ICA) and/or time/frequency analysis, as well as standard averaging methods. EEGLAB also incorporates extensive tutorial and help windows, plus a command history function that eases users' transition from GUI-based data exploration to building and running batch or custom data analysis scripts. EEGLAB offers a wealth of methods for visualizing and modeling event-related brain dynamics, both at the level of individual EEGLAB 'datasets' and/or across a collection of datasets brought together in an EEGLAB 'studyset.' For experienced Matlab users, EEGLAB offers a structured programming environment for storing, accessing, measuring, manipulating and visualizing event-related EEG data.

Latest News

[iBEAT • May 15 • no comments]

Update of iBEAT 1.1 package

A bug on tissue segmentation of single-time-point image is reported and fixed.

[1000 Functional Connectomes Project • May 10 • no comments]

The Neuro-Bureau Brain-Art Competition 2012

NEURO-BUREAU BRAIN-ART COMPETITION 2012 http://www.neurobureau.org/BrainArt/ Submission Deadline: 11:59PM CDT, Friday, June 1st, 2012 Award Notification: June 11th during the OHBM Annual Meeting, Beijing. In order to recognize the beauty and...

[Computational Morphometry Toolkit (CMTK) • May 8 • no comments]

CMTK 2.2 release adds new features

We are pleased to announce the release of CMTK 2.2 with some exciting new features. Source code and pre-compiled packages are available from CMTK's "Downloads" section on NITRC. Most importantly, CMTK now has two tools to perform structural...

[BrainLiner.jp • May 4 • no comments]

Matlab Files Added

In addition to being able to download Neuroshare (.nsn) files, we added the ability to download Matlab (v7.3) .mat files, which can be read natively by Matlab and by HDF5 libraries in languages like Python and R. This is a huge update to our project...

[1000 Functional Connectomes Project • May 2 • no comments]

Announcing the INDI Summer of Sharing 2012

THE INTERNATIONAL NEUROIMAGING DATA-SHARING INITIATIVE (INDI) SUMMER OF SHARING 2012 http://fcon_1000.projects.nitrc.org/ Open science initiatives are transforming the neuroimaging community. Researchers who once struggled to obtain 20-30 datasets...

[NITRC Community • Apr 30 • no comments]

NIF Webinar - Mind Research Network and BrainMap

The next NIF Webinar will be held on Tuesday, May 1, 2012 at 11:00 am PDT. Please join Drs. Angie Laird & Jessica Turner as they discuss the Mind Research Network and BrainMap projects. The following is a description of the webinar: Drs....

[NITRC Community • Apr 26 • no comments]

NIH Pediatric MRI Data Repository - 5th Release

The National Institutes of Health (NIH) are pleased to make available the 5th data release of the NIH MRI Study of Normal Brain Development to qualified researchers. New in this release are longitudinally-registered anatomic MRI data (images and derived...

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