Browse tools by functionality

  1. Atlas Application (26)
  2. Database Application (14)
  3. Experimental Control (8)
  4. Format Conversion (13)
  5. Image Reconstruction (10) »
    1. » Tomography (1)
  6. Information Theory (1)
  7. Modeling (50) »
    1. » Forward - Inverse (10)
    2.    » EEG Modeling (5)
    3.    » MEG Modeling (6)
    4. » Mesh Generation (9)
    5. » Model Generation (1)
    6. » Monte Carlo (4)
    7. » Random Walk (1)
    8. » Simulation (4)
    9. » Super Tensor (3)
    10.    » Diffusion Spectrum (2)
    11.    » Q-Ball (3)
    12. » Tensor Metric (12)
  8. Quantification (45) »
    1. » Morphology (10)
    2. » Neuronal Characterization (1)
    3. » Overlap Metrics (2)
    4.    » DICE Coefficient (1)
    5.    » Tanomoto Coefficient (1)
    6. » Position (3)
    7. » Quantitative Shape Analysis (4)
    8. » Volumetric Analysis (20)
    9.    » Center of Mass (1)
    10.    » Volume Measurement (7)
  9. Segmentation (47) »
    1. » Active Contour (3)
    2. » Expectation Minimization (2)
    3. » Intensity Contour (1)
    4. » KMeans (1)
    5. » Manual (1)
    6. » Neural Network (1)
    7. » Quality Metrics (2)
    8. » Region Growing (2)
    9.    » Constrained Region Growing (2)
    10. » Region of Interest (18)
    11.    » Labeling (10)
    12. » Volumetric Analysis (9)
  10. Shape Analysis (11) »
    1. » Medial Axis (1)
    2. » Shape Decomposition (3)
    3.    » Spherical Harmonics (3)
  11. Spatial Transformation (54) »
    1. » Artifact Removal (11)
    2. » Colocalization (1)
    3. » Frequency Domain (6)
    4.    » Filtering (3)
    5.    » Fourier Transform (1)
    6. » Intensity Operations (5)
    7.    » Intensity Non-uniformity Correction (3)
    8. » Quality Metrics (7)
    9. » Registration (33)
    10.    » Fiducial (1)
    11.    » Image-to-Image (18)
    12.    » Image-to-Template (10)
    13. » Resampling (21)
    14.    » Nearest Neighbor (1)
    15.    » Sinc Function Interpolation (1)
    16.    » Spline Interpolation (4)
    17.    » Tri-linear (2)
    18. » Spatial Convolution - Deconvolution (1)
    19. » Warping (14)
    20.    » Affine Warp (6)
    21.    » Linear Warp (1)
    22.    » Nonlinear Warp (7)
    23. » Wavelet Transformation (1)
  12. Statistical Operation (54) »
    1. » Discriminant Analysis (1)
    2. » Independent Component Analysis (12)
    3. » Principal Component Analysis (11)
    4. » Regression (23)
    5.    » Linear (16)
    6.    » Nonlinear (3)
  13. Surface Analysis (15) »
    1. » Curvature (2)
    2.    » Gaussian Curvature (2)
    3.    » Mean Curvature (2)
    4. » Thickness (4)
  14. Temporal Transformation (20) »
    1. » Fourier Time-domain Analysis (2)
    2. » Motion Analysis (5)
    3. » Spectral Analysis (4)
    4. » Temporal Convolution - Deconvolution (2)
    5. » Temporal Curve Fitting (3)
    6.    » Haemodynamic Response (3)
  15. Time Domain Analysis (23) »
    1. » Correlation (5)
    2.    » Cross-correlation (1)
    3. » Multivariate Analysis (8)
  16. Tractography (30) »
    1. » Fiber Tracking (18)
    2.    » Diffusion MR Fiber Tracking (14)
  17. Visualization (78) »
    1. » Animation (6)
    2. » Image Display (40)
    3.    » Clipping (2)
    4.    » Three Dimensional Display (14)
    5.    » Two Dimensional Display (10)
    6. » Rendering (26)
    7.    » Ray Tracing (1)
    8.    » Surface Rendering (16)
    9.    » Volume Rendering (8)
  18. Workflow (33)

Examples:
  • • modeling OR simulation
  • • morphology AND animation
  • • segmentation NOT Linux
  • • "region of interest"
LIBRA

Featured tool/resource:

LIBRA

LIBRA is a Longitudinal Infant Brain pRocessing pAckage with graphical user interfaces for segmentation and labeling of longitudinal infant brain MR images. Main functions of the software (step by step) include image preprocessing, brain extraction, tissue segmentation and brain labeling. The software is developed by the IDEA group at the University of North Carolina at Chapel Hill, directed by Dr. Dinggang Shen (dinggang_shen@med.unc.edu). Linux operating system is required for the stand-alone executable software. The graphical user interfaces and overall framework of the LIBRA software are implemented in MATLAB. The image processing functions are implemented with the combination of C/C++, MATLAB, Perl and Shell languages. Parallelization technologies are used in the software to speed up image processing.

Latest News

[Measure Projection Toolbox (MPT) • Jan 26 • no comments]

Measure Projection 1.41

A new version of Measure Projection toolbox (MPT) is ready to download. New features includes: (1) Cortex visualization: now you can show Domains and other brain regions directly on cortex (with some approximation of course, since we do not have subject-specific...

[HAMMER Suite • Jan 23 • no comments]

New generation of Symmetric HAMMER is released!

Check our latest patch and upgrade your HAMMER Suite installation please. The new registration method provides more accurate registration results compared with our previous releases.

[Computational Morphometry Toolkit (CMTK) • Jan 18 • no comments]

CMTK 2.1.1 released

We are pleased to announce the release of CMTK 2.1.1. Most significant addition in this release is a new tool, "epiunwarp", for correction of B0-field distortion in echo-planar MR images (e.g., diffusion-weighted images). The tool implements...

[NITRC Community • Jan 12 • no comments]

Allen Brain Atlas training offered at UCSD

A training workshop is being offered at UCSD for the Allen Brain Atlas. "Using the Allen Brain Atlas Online Public Resources" will feature a training workshop on the Allen Brain Atlas online public resources for exploring gene expression in...

[NITRC Community • Jan 9 • no comments]

Get ready for Brain Awareness Week

Brain Awareness Week (BAW), March 12-18, 2012, is the global campaign to increase public awareness of the progress and benefits of brain research. Every March, BAW unites the efforts of partner organizations worldwide in a celebration of the brain...

[HCP WU-Minn Consortium • Jan 3 • no comments]

HCP is one of 10 projects to follow in 2012

New Scientist magazine names the Human Connectome Project in its Smart Guide 2012: 10 ideas you'll want to understand http://www.newscientist.com/article/mg21...

[NITRC Community • Dec 29, 2011 • no comments]

Program Announcement: Imaging - Science Track Award

Imaging - Science Track Award for Research Transition (I/START) [R03] (PAR-12-066) see http://grants.nih.gov/grants/guide/pa-fi... National Institute on Drug Abuse Application Receipt/Submission Date(s): Standard dates until...

more news