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help > RE: Different outputs of T1 image with dcm2nii
Oct 12, 2016 02:10 PM | Chris Rorden
RE: Different outputs of T1 image with dcm2nii
For 3D acquisitions, my software may create additional images with
the 'o' and 'co' prefix. The raw data is saved without a prefix.
The 'o' image is rotated to the nearest orthogonal plane as the
NIfTI. The raw and 'o' image are identical for tools that fully
support the NifTI format (e.g. SPM12), but the 'o' image might
appear in a more canonical orientation if you view it in software
that shows how the data is saved to disk (e.g. FSLview). The 'co'
image attempts to crop excess neck signal that can disrupt
coregistration and normalization. I would visually inspect these
images, but the 'co' images are often the ideal choice for
normalization to stnadard space or coregistration with images that
show less neck signal (e.g. fMRI, DTI).
Threaded View
Title | Author | Date |
---|---|---|
Chunliang Feng | Nov 30, 2015 | |
Chris Rorden | Oct 12, 2016 | |
Mojdeh Zamyadi | Dec 22, 2016 | |