dke-questions
dke-questions > RE: 'error using dke (line 47)' with Bruker f
Aug 30, 2017 12:08 AM | Kirk Feindel - University of Western Australia
RE: 'error using dke (line 47)' with Bruker f
Hi Clementine,
Without having a copy of your current parameter file, bvecs, and example dataset, etc., providing advice to you will be difficult.
Remember that you don't need a bvecs line for b0, and that you would be using the save bvecs for each b-weighting, so bvecs should have the number of lines equal to your number of directions.
According to your original parameter file, I presume you have used 30 directions.
I note that you only specify bval = [0 1000] which means you can't reconstruct the kurtosis tensor, only the diffusion tensor. Did you do two non-zero b-values?
The following won't affect whether DKE runs, but I would:
(a) change fwhm_img to match your acquisition resolution (currently you have 2.7 mm isotropic).
(b) change map_interpolation_method.resolution=1 (which is in mm, so should also be adjusted, or turned off with the flag two lines above.
If you attach an example dataset, etc. I will see if I can get DKE to finish on my machine.
Cheers,
Kirk
Without having a copy of your current parameter file, bvecs, and example dataset, etc., providing advice to you will be difficult.
Remember that you don't need a bvecs line for b0, and that you would be using the save bvecs for each b-weighting, so bvecs should have the number of lines equal to your number of directions.
According to your original parameter file, I presume you have used 30 directions.
I note that you only specify bval = [0 1000] which means you can't reconstruct the kurtosis tensor, only the diffusion tensor. Did you do two non-zero b-values?
The following won't affect whether DKE runs, but I would:
(a) change fwhm_img to match your acquisition resolution (currently you have 2.7 mm isotropic).
(b) change map_interpolation_method.resolution=1 (which is in mm, so should also be adjusted, or turned off with the flag two lines above.
If you attach an example dataset, etc. I will see if I can get DKE to finish on my machine.
Cheers,
Kirk
Threaded View
Title | Author | Date |
---|---|---|
Clementine Lesbats | Aug 14, 2017 | |
Clementine Lesbats | Aug 30, 2017 | |
Kirk Feindel | Aug 31, 2017 | |
Clementine Lesbats | Aug 31, 2017 | |
Clementine Lesbats | Aug 29, 2017 | |
Kirk Feindel | Aug 30, 2017 | |
Clementine Lesbats | Aug 22, 2017 | |
Kirk Feindel | Aug 15, 2017 | |
Clementine Lesbats | Aug 15, 2017 | |