dke-questions > RE: 'error using dke (line 47)' with Bruker f
Aug 30, 2017  12:08 AM | Kirk Feindel - University of Western Australia
RE: 'error using dke (line 47)' with Bruker f
Hi Clementine,

Without having a copy of your current parameter file, bvecs, and example dataset, etc., providing advice to you will be difficult.

Remember that you don't need a bvecs line for b0, and that you would be using the save bvecs for each b-weighting, so bvecs should have the number of lines equal to your number of directions.  

According to your original parameter file, I presume you have used 30 directions.

I note that you only specify bval = [0 1000] which means you can't reconstruct the kurtosis tensor, only the diffusion tensor.  Did you do two non-zero b-values?

The following won't affect whether DKE runs, but I would:

(a) change fwhm_img to match your acquisition resolution (currently you have 2.7 mm isotropic).

(b) change map_interpolation_method.resolution=1 (which is in mm, so should also be adjusted, or turned off with the flag two lines above.

If you attach an example dataset, etc. I will see if I can get DKE to finish on my machine.

Cheers,

Kirk

Threaded View

TitleAuthorDate
Clementine Lesbats Aug 14, 2017
Clementine Lesbats Aug 30, 2017
Kirk Feindel Aug 31, 2017
Clementine Lesbats Aug 31, 2017
Clementine Lesbats Aug 29, 2017
RE: 'error using dke (line 47)' with Bruker f
Kirk Feindel Aug 30, 2017
Clementine Lesbats Aug 22, 2017
Kirk Feindel Aug 15, 2017
Clementine Lesbats Aug 15, 2017