Hi Beatriz,

Here is the full output from the Slicer including the error message pasted below. Hope you can help! Cathy :

-------------------------------------------------------------------------------------------

Type: Information
Time: Mon Nov 21 14:25:33 2011
Description: Shape Analysis Module completed without errors


Type: Error
Time: Mon Nov 21 14:25:33 2011
Description: ERROR: In /build/buildd/slicer-3.6.3~svn16592/Modules/CommandLineModule/vtkCommandLineModuleLogic.cxx, line 1499
vtkCommandLineModuleLogic (0x6c194c0): Shape Analysis Module standard error:

Error: Could not run CreateMRML:
No such file or directory
Error: Could not run CreateMRML:
No such file or directory
Error: Could not run CreateMRML:
No such file or directory
Error: Could not run CreateMRML:
No such file or directory
Error: Could not run CreateMRML:
No such file or directory
Error: Could not run CreateMRML:
No such file or directory




Type: Information
Time: Mon Nov 21 14:25:33 2011
Description: Shape Analysis Module standard output:

------ Shape Analysis Module start -----


Computing ShapeAnalysisModule...

/home/dara/CS/spharm/FEP_Caud_Left_test/output
/home/dara/CS/spharm/FEP_Caud_Left_test/output/
/home/dara/CS/spharm/FEP_Caud_Left_test/output/ShapeAnalysisModule.bms
Number of Datas: 6
    Executing BatchMake...


Case:/home/dara/CS/spharm/FEP_Caud_Left_test/orig/cL_003MC.gipl

Doing Post Processing
Status: Start SegPostProcessCLP /home/dara/CS/spharm/FEP_Caud_Left_test/orig/cL_003MC.gipl /home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/PostProcess/cL_003MC_pp.gipl.gz --space 0.5,0.5,0.5
 run: 'SegPostProcessCLP' '''/home/dara/CS/spharm/FEP_Caud_Left_test/orig/cL_003MC.gipl' '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/PostProcess/cL_003MC_pp.gipl.gz' --space '0.5,0.5,0.5'''
Status: Finish: Execution time 4504ms

Doing GenParaMesh
Status: Start GenParaMeshCLP --EulerFile --outEulerName /home/dara/CS/spharm/FEP_Caud_Left_test/output/EulerFiles/cL_003MC_euler.txt --iter 1000 --label 1 /home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/PostProcess/cL_003MC_pp.gipl.gz /home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/cL_003MC_pp_para.vtk /home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/cL_003MC_pp_surf.vtk
 run: 'GenParaMeshCLP' ''--EulerFile --outEulerName '/home/dara/CS/spharm/FEP_Caud_Left_test/output/EulerFiles/cL_003MC_euler.txt' --iter '1000' --label '1' '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/PostProcess/cL_003MC_pp.gipl.gz' '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/cL_003MC_pp_para.vtk' '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/cL_003MC_pp_surf.vtk'''
Status: Finish: Execution time 36312ms

Doing ParaToSPHARMMesh
Creating Template


Status: Start ParaToSPHARMMeshCLP /home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/cL_003MC_pp_para.vtk /home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/cL_003MC_pp_surf.vtk /home/dara/CS/spharm/FEP_Caud_Left_test/output/Template/cL_003MC_pp_surf --subdivLevel 10 --spharmDegree 15 --FinalFlip 0 --paraOut
 run: 'ParaToSPHARMMeshCLP' '''/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/cL_003MC_pp_para.vtk' '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/cL_003MC_pp_surf.vtk' '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Template/cL_003MC_pp_surf' --subdivLevel '10' --spharmDegree '15' --FinalFlip '0' --paraOut''
Status: Finish: Execution time 3601ms

regTemplate: cL_003MC_pp_surfSPHARM.vtk
flipTemplate: cL_003MC_pp_surfSPHARM.coef

Status: Start ParaToSPHARMMeshCLP /home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/cL_003MC_pp_para.vtk /home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/cL_003MC_pp_surf.vtk /home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/cL_003MC_pp_surf --regTemplateFileOn --regTemplate /home/dara/CS/spharm/FEP_Caud_Left_test/output/Template/cL_003MC_pp_surfSPHARM.vtk --flipTemplateOn --flipTemplate /home/dara/CS/spharm/FEP_Caud_Left_test/output/Template/cL_003MC_pp_surfSPHARM.coef --subdivLevel 10 --spharmDegree 15 --FinalFlip 0 --paraOut
 run: 'ParaToSPHARMMeshCLP' '''/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/cL_003MC_pp_para.vtk' '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/cL_003MC_pp_surf.vtk' '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/cL_003MC_pp_surf' --regTemplateFileOn --regTemplate '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Template/cL_003MC_pp_surfSPHARM.vtk' --flipTemplateOn --flipTemplate '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Template/cL_003MC_pp_surfSPHARM.coef' --subdivLevel '10' --spharmDegree '15' --FinalFlip '0' --paraOut''
Status: Finish: Execution time 4502ms
/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/cL_003MC_pp_surf_paraPhiHalf.txt

Case:/home/dara/CS/spharm/FEP_Caud_Left_test/orig/fL_133AW.gipl

Doing Post Processing
Status: Start SegPostProcessCLP /home/dara/CS/spharm/FEP_Caud_Left_test/orig/fL_133AW.gipl /home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/PostProcess/fL_133AW_pp.gipl.gz --space 0.5,0.5,0.5
 run: 'SegPostProcessCLP' '''/home/dara/CS/spharm/FEP_Caud_Left_test/orig/fL_133AW.gipl' '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/PostProcess/fL_133AW_pp.gipl.gz' --space '0.5,0.5,0.5'''
Status: Finish: Execution time 4503ms

Doing GenParaMesh
Status: Start GenParaMeshCLP --EulerFile --outEulerName /home/dara/CS/spharm/FEP_Caud_Left_test/output/EulerFiles/fL_133AW_euler.txt --iter 1000 --label 1 /home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/PostProcess/fL_133AW_pp.gipl.gz /home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/fL_133AW_pp_para.vtk /home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/fL_133AW_pp_surf.vtk
 run: 'GenParaMeshCLP' ''--EulerFile --outEulerName '/home/dara/CS/spharm/FEP_Caud_Left_test/output/EulerFiles/fL_133AW_euler.txt' --iter '1000' --label '1' '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/PostProcess/fL_133AW_pp.gipl.gz' '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/fL_133AW_pp_para.vtk' '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/fL_133AW_pp_surf.vtk'''
Status: Finish: Execution time 31210ms

Doing ParaToSPHARMMesh

regTemplate: cL_003MC_pp_surfSPHARM.vtk
flipTemplate: cL_003MC_pp_surfSPHARM.coef

Status: Start ParaToSPHARMMeshCLP /home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/fL_133AW_pp_para.vtk /home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/fL_133AW_pp_surf.vtk /home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/fL_133AW_pp_surf --regTemplateFileOn --regTemplate /home/dara/CS/spharm/FEP_Caud_Left_test/output/Template/cL_003MC_pp_surfSPHARM.vtk --flipTemplateOn --flipTemplate /home/dara/CS/spharm/FEP_Caud_Left_test/output/Template/cL_003MC_pp_surfSPHARM.coef --subdivLevel 10 --spharmDegree 15 --FinalFlip 0 --paraOut
 run: 'ParaToSPHARMMeshCLP' '''/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/fL_133AW_pp_para.vtk' '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/fL_133AW_pp_surf.vtk' '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/fL_133AW_pp_surf' --regTemplateFileOn --regTemplate '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Template/cL_003MC_pp_surfSPHARM.vtk' --flipTemplateOn --flipTemplate '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Template/cL_003MC_pp_surfSPHARM.coef' --subdivLevel '10' --spharmDegree '15' --FinalFlip '0' --paraOut''
Status: Finish: Execution time 4201ms
/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/fL_133AW_pp_surf_paraPhiHalf.txt

Case:/home/dara/CS/spharm/FEP_Caud_Left_test/orig/cL_030GOC.gipl

Doing Post Processing
Status: Start SegPostProcessCLP /home/dara/CS/spharm/FEP_Caud_Left_test/orig/cL_030GOC.gipl /home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/PostProcess/cL_030GOC_pp.gipl.gz --space 0.5,0.5,0.5
 run: 'SegPostProcessCLP' '''/home/dara/CS/spharm/FEP_Caud_Left_test/orig/cL_030GOC.gipl' '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/PostProcess/cL_030GOC_pp.gipl.gz' --space '0.5,0.5,0.5'''
Status: Finish: Execution time 4514ms

Doing GenParaMesh
Status: Start GenParaMeshCLP --EulerFile --outEulerName /home/dara/CS/spharm/FEP_Caud_Left_test/output/EulerFiles/cL_030GOC_euler.txt --iter 1000 --label 1 /home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/PostProcess/cL_030GOC_pp.gipl.gz /home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/cL_030GOC_pp_para.vtk /home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/cL_030GOC_pp_surf.vtk
 run: 'GenParaMeshCLP' ''--EulerFile --outEulerName '/home/dara/CS/spharm/FEP_Caud_Left_test/output/EulerFiles/cL_030GOC_euler.txt' --iter '1000' --label '1' '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/PostProcess/cL_030GOC_pp.gipl.gz' '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/cL_030GOC_pp_para.vtk' '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/cL_030GOC_pp_surf.vtk'''
Status: Finish: Execution time 59118ms

Doing ParaToSPHARMMesh

regTemplate: cL_003MC_pp_surfSPHARM.vtk
flipTemplate: cL_003MC_pp_surfSPHARM.coef

Status: Start ParaToSPHARMMeshCLP /home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/cL_030GOC_pp_para.vtk /home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/cL_030GOC_pp_surf.vtk /home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/cL_030GOC_pp_surf --regTemplateFileOn --regTemplate /home/dara/CS/spharm/FEP_Caud_Left_test/output/Template/cL_003MC_pp_surfSPHARM.vtk --flipTemplateOn --flipTemplate /home/dara/CS/spharm/FEP_Caud_Left_test/output/Template/cL_003MC_pp_surfSPHARM.coef --subdivLevel 10 --spharmDegree 15 --FinalFlip 0 --paraOut
 run: 'ParaToSPHARMMeshCLP' '''/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/cL_030GOC_pp_para.vtk' '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/cL_030GOC_pp_surf.vtk' '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/cL_030GOC_pp_surf' --regTemplateFileOn --regTemplate '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Template/cL_003MC_pp_surfSPHARM.vtk' --flipTemplateOn --flipTemplate '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Template/cL_003MC_pp_surfSPHARM.coef' --subdivLevel '10' --spharmDegree '15' --FinalFlip '0' --paraOut''
Status: Finish: Execution time 4802ms
/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/cL_030GOC_pp_surf_paraPhiHalf.txt

Case:/home/dara/CS/spharm/FEP_Caud_Left_test/orig/cL_018AM.gipl

Doing Post Processing
Status: Start SegPostProcessCLP /home/dara/CS/spharm/FEP_Caud_Left_test/orig/cL_018AM.gipl /home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/PostProcess/cL_018AM_pp.gipl.gz --space 0.5,0.5,0.5
 run: 'SegPostProcessCLP' '''/home/dara/CS/spharm/FEP_Caud_Left_test/orig/cL_018AM.gipl' '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/PostProcess/cL_018AM_pp.gipl.gz' --space '0.5,0.5,0.5'''
Status: Finish: Execution time 4202ms

Doing GenParaMesh
Status: Start GenParaMeshCLP --EulerFile --outEulerName /home/dara/CS/spharm/FEP_Caud_Left_test/output/EulerFiles/cL_018AM_euler.txt --iter 1000 --label 1 /home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/PostProcess/cL_018AM_pp.gipl.gz /home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/cL_018AM_pp_para.vtk /home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/cL_018AM_pp_surf.vtk
 run: 'GenParaMeshCLP' ''--EulerFile --outEulerName '/home/dara/CS/spharm/FEP_Caud_Left_test/output/EulerFiles/cL_018AM_euler.txt' --iter '1000' --label '1' '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/PostProcess/cL_018AM_pp.gipl.gz' '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/cL_018AM_pp_para.vtk' '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/cL_018AM_pp_surf.vtk'''
Status: Finish: Execution time 42314ms

Doing ParaToSPHARMMesh

regTemplate: cL_003MC_pp_surfSPHARM.vtk
flipTemplate: cL_003MC_pp_surfSPHARM.coef

Status: Start ParaToSPHARMMeshCLP /home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/cL_018AM_pp_para.vtk /home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/cL_018AM_pp_surf.vtk /home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/cL_018AM_pp_surf --regTemplateFileOn --regTemplate /home/dara/CS/spharm/FEP_Caud_Left_test/output/Template/cL_003MC_pp_surfSPHARM.vtk --flipTemplateOn --flipTemplate /home/dara/CS/spharm/FEP_Caud_Left_test/output/Template/cL_003MC_pp_surfSPHARM.coef --subdivLevel 10 --spharmDegree 15 --FinalFlip 0 --paraOut
 run: 'ParaToSPHARMMeshCLP' '''/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/cL_018AM_pp_para.vtk' '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/cL_018AM_pp_surf.vtk' '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/cL_018AM_pp_surf' --regTemplateFileOn --regTemplate '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Template/cL_003MC_pp_surfSPHARM.vtk' --flipTemplateOn --flipTemplate '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Template/cL_003MC_pp_surfSPHARM.coef' --subdivLevel '10' --spharmDegree '15' --FinalFlip '0' --paraOut''
Status: Finish: Execution time 4502ms
/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/cL_018AM_pp_surf_paraPhiHalf.txt

Case:/home/dara/CS/spharm/FEP_Caud_Left_test/orig/fL_027DK.gipl

Doing Post Processing
Status: Start SegPostProcessCLP /home/dara/CS/spharm/FEP_Caud_Left_test/orig/fL_027DK.gipl /home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/PostProcess/fL_027DK_pp.gipl.gz --space 0.5,0.5,0.5
 run: 'SegPostProcessCLP' '''/home/dara/CS/spharm/FEP_Caud_Left_test/orig/fL_027DK.gipl' '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/PostProcess/fL_027DK_pp.gipl.gz' --space '0.5,0.5,0.5'''
Status: Finish: Execution time 4502ms

Doing GenParaMesh
Status: Start GenParaMeshCLP --EulerFile --outEulerName /home/dara/CS/spharm/FEP_Caud_Left_test/output/EulerFiles/fL_027DK_euler.txt --iter 1000 --label 1 /home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/PostProcess/fL_027DK_pp.gipl.gz /home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/fL_027DK_pp_para.vtk /home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/fL_027DK_pp_surf.vtk
 run: 'GenParaMeshCLP' ''--EulerFile --outEulerName '/home/dara/CS/spharm/FEP_Caud_Left_test/output/EulerFiles/fL_027DK_euler.txt' --iter '1000' --label '1' '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/PostProcess/fL_027DK_pp.gipl.gz' '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/fL_027DK_pp_para.vtk' '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/fL_027DK_pp_surf.vtk'''
Status: Finish: Execution time 51617ms

Doing ParaToSPHARMMesh

regTemplate: cL_003MC_pp_surfSPHARM.vtk
flipTemplate: cL_003MC_pp_surfSPHARM.coef

Status: Start ParaToSPHARMMeshCLP /home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/fL_027DK_pp_para.vtk /home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/fL_027DK_pp_surf.vtk /home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/fL_027DK_pp_surf --regTemplateFileOn --regTemplate /home/dara/CS/spharm/FEP_Caud_Left_test/output/Template/cL_003MC_pp_surfSPHARM.vtk --flipTemplateOn --flipTemplate /home/dara/CS/spharm/FEP_Caud_Left_test/output/Template/cL_003MC_pp_surfSPHARM.coef --subdivLevel 10 --spharmDegree 15 --FinalFlip 0 --paraOut
 run: 'ParaToSPHARMMeshCLP' '''/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/fL_027DK_pp_para.vtk' '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/fL_027DK_pp_surf.vtk' '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/fL_027DK_pp_surf' --regTemplateFileOn --regTemplate '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Template/cL_003MC_pp_surfSPHARM.vtk' --flipTemplateOn --flipTemplate '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Template/cL_003MC_pp_surfSPHARM.coef' --subdivLevel '10' --spharmDegree '15' --FinalFlip '0' --paraOut''
Status: Finish: Execution time 4502ms
/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/fL_027DK_pp_surf_paraPhiHalf.txt

Case:/home/dara/CS/spharm/FEP_Caud_Left_test/orig/fL_035MH.gipl

Doing Post Processing
Status: Start SegPostProcessCLP /home/dara/CS/spharm/FEP_Caud_Left_test/orig/fL_035MH.gipl /home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/PostProcess/fL_035MH_pp.gipl.gz --space 0.5,0.5,0.5
 run: 'SegPostProcessCLP' '''/home/dara/CS/spharm/FEP_Caud_Left_test/orig/fL_035MH.gipl' '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/PostProcess/fL_035MH_pp.gipl.gz' --space '0.5,0.5,0.5'''
Status: Finish: Execution time 4507ms

Doing GenParaMesh
Status: Start GenParaMeshCLP --EulerFile --outEulerName /home/dara/CS/spharm/FEP_Caud_Left_test/output/EulerFiles/fL_035MH_euler.txt --iter 1000 --label 1 /home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/PostProcess/fL_035MH_pp.gipl.gz /home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/fL_035MH_pp_para.vtk /home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/fL_035MH_pp_surf.vtk
 run: 'GenParaMeshCLP' ''--EulerFile --outEulerName '/home/dara/CS/spharm/FEP_Caud_Left_test/output/EulerFiles/fL_035MH_euler.txt' --iter '1000' --label '1' '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/PostProcess/fL_035MH_pp.gipl.gz' '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/fL_035MH_pp_para.vtk' '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/fL_035MH_pp_surf.vtk'''
Status: Finish: Execution time 51616ms

Doing ParaToSPHARMMesh

regTemplate: cL_003MC_pp_surfSPHARM.vtk
flipTemplate: cL_003MC_pp_surfSPHARM.coef

Status: Start ParaToSPHARMMeshCLP /home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/fL_035MH_pp_para.vtk /home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/fL_035MH_pp_surf.vtk /home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/fL_035MH_pp_surf --regTemplateFileOn --regTemplate /home/dara/CS/spharm/FEP_Caud_Left_test/output/Template/cL_003MC_pp_surfSPHARM.vtk --flipTemplateOn --flipTemplate /home/dara/CS/spharm/FEP_Caud_Left_test/output/Template/cL_003MC_pp_surfSPHARM.coef --subdivLevel 10 --spharmDegree 15 --FinalFlip 0 --paraOut
 run: 'ParaToSPHARMMeshCLP' '''/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/fL_035MH_pp_para.vtk' '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/fL_035MH_pp_surf.vtk' '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/fL_035MH_pp_surf' --regTemplateFileOn --regTemplate '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Template/cL_003MC_pp_surfSPHARM.vtk' --flipTemplateOn --flipTemplate '/home/dara/CS/spharm/FEP_Caud_Left_test/output/Template/cL_003MC_pp_surfSPHARM.coef' --subdivLevel '10' --spharmDegree '15' --FinalFlip '0' --paraOut''
Status: Finish: Execution time 4801ms
/home/dara/CS/spharm/FEP_Caud_Left_test/output/Mesh/SPHARM/fL_035MH_pp_surf_paraPhiHalf.txt

    Executing BatchMake: Done!

/home/dara/CS/spharm/FEP_Caud_Left_test/output/ShapeAnalysisModule.bms


Execute Meshmath...

meshmath template
mrml /home/dara/CS/spharm/FEP_Caud_Left_test/output/MRML/ShapeAnalysisModuleMRMLscene_allVTK_Phi.mrml

Error: Could not run CreateMRML:
No such file or directory
mrml /home/dara/CS/spharm/FEP_Caud_Left_test/output/MRML/ShapeAnalysisModuleMRMLscene_allVTK_Theta.mrml

Error: Could not run CreateMRML:
No such file or directory
mrml /home/dara/CS/spharm/FEP_Caud_Left_test/output/MRML/Ellalign/ShapeAnalysisModuleMRMLscene_allVTK_Phi.mrml

Error: Could not run CreateMRML:
No such file or directory
mrml /home/dara/CS/spharm/FEP_Caud_Left_test/output/MRML/Ellalign/ShapeAnalysisModuleMRMLscene_allVTK_Theta.mrml

Error: Could not run CreateMRML:
No such file or directory
mrml /home/dara/CS/spharm/FEP_Caud_Left_test/output/MRML/Procalign/ShapeAnalysisModuleMRMLscene_allVTK_Phi.mrml

Error: Could not run CreateMRML:
No such file or directory
mrml /home/dara/CS/spharm/FEP_Caud_Left_test/output/MRML/Procalign/ShapeAnalysisModuleMRMLscene_allVTK_Theta.mrml

Error: Could not run CreateMRML:
No such file or directory


Type: Information
Time: Mon Nov 21 14:20:01 2011
Description: Shape Analysis Module command line:

/usr/local/spharm/ShapeAnalysisModule --sx 0.5 --sy 0.5 --sz 0.5 --label 1 --NumberofIterations 1000 --SubdivLevelValue 10 --SPHARMDegreeValue 15 --columVolumeFile 0 --varX 10 --varY 10 --varZ 10 --regTemplate None --flipTemplate None --paraOutTemplate --noFlip --HorizontalGridPara 5 --VerticalGridPara 5 --UseProcalign --startRegularization 10 --endRegularization 0.01 --optimizationIt 200 --RelativeWeight 1 /home/dara/CS/spharm/FEP_Caud_Left_test/FEP_Left_Caud.csv /home/dara/CS/spharm/FEP_Caud_Left_test/output


Type: Information
Time: Mon Nov 21 14:20:01 2011
Description: CommandLineModule

Type: Information
Time: Mon Nov 21 14:20:01 2011
Description: /usr/local/spharm/ShapeAnalysisModule

Type: Information
Time: Mon Nov 21 14:20:01 2011
Description: Found CommandLine Module, target is