Hi,
I'm not sure if I'm experiencing expected problems with the new
version of dcm2niix (previously I've only used dcm2nii):
I have several sets of data acquired on a Siemens Prisma with a
variety of different acquisitions: whole head EPI, ZoomIT EPI
(restricted/non-square FoV), and ZoomiT EP2D_diff (same deal just
diffusion data). When I run the conversion I point dcm2niix to the
DICOM download folder (foo), which has 3 subfolders:
I.e.
foo/001
foo/002
foo/003
Command I ran was:
dcm2niix -f %p_%s -z y -o "/Users/jon/converted" foo
Lots of warnings and errors, including the mysterious "Oh Dear!!!!"
and the output never ends up in the folder "converted" it always
gets written to the source folder.
One thing that seemed to cause problems was the existence of a
.dcm2nii config file in my home folder, renaming this seemed to
solve the problem with the program creating 4 outputs per series.
FYI there were approximately 3 separate localizers, and 2 fieldmaps
during the course of scan. OsiriX was able to make sense of it all.
Please let me know if you need more information.
Best wishes,
Jon
Chris Rorden's dcm2niiX version 5May2016o (64-bit)
Version 5May2016o (64-bit)
Found 2005 DICOM image(s)
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050000/17409995
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050000/17417753
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050000/17417796
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050000/17417839
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050000/17417882
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050000/17417925
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050000/17417968
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050000/17418011
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050000/17418054
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050000/17418097
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050000/17418140
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050000/17418183
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050000/17418226
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050000/17418269
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050000/17418312
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050000/17418355
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050000/17418398
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050000/17418441
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050000/17418527
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050000/17418570
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050000/17418613
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050000/17418656
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050000/17418699
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050000/17418742
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050000/17418785
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050000/17418828
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050000/17418871
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050000/17418914
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050000/17418957
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050000/17419000
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050000/17419043
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050000/17419086
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050000/17419129
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050000/17419172
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050000/17419215
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17354347
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17354390
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17354433
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17354476
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17371013
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17371056
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17371099
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17371142
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17371185
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17371228
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17371271
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17371314
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17371357
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17371400
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17371443
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17371486
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17371529
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17371572
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17371615
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17371658
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17371701
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17371787
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17371830
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17371873
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17371916
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17371959
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17372002
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17372045
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17372088
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17372131
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17372174
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17372217
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17372260
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17372303
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17372346
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17372470
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17372513
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17372556
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17372599
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17372642
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17372685
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17372728
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17372771
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17372814
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17372857
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17372900
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17372943
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17372986
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17373029
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17373072
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17373115
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17373158
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17373201
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17373244
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17373287
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17373330
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17373373
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17373416
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17373459
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17373502
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17373545
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17373588
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17373631
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17373671
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17381389
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17381432
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17381475
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17381518
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17381561
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17381604
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17381647
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17381690
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17382555
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17382598
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17382641
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17382684
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17382727
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17382770
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17382813
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17382856
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17382899
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17382942
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17382985
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17383028
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17383071
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17383114
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17383157
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17383200
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17383243
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17383286
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17383329
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17383372
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17383415
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17383458
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17383501
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17383544
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17383587
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17383630
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17383673
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17383716
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17383759
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17383802
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17383845
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17383888
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17383931
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17383974
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17384017
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17384060
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17384100
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17397279
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17397322
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17397365
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17397408
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17397451
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17397494
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17397537
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17397580
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17397623
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17397666
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17397709
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17397752
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17397795
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17397838
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17397881
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17397924
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17397967
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17398010
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17398053
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17398096
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17398139
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17398182
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17398225
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17398268
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17398311
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17398354
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17398397
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17398440
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17398483
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17398526
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17398569
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17398612
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17398655
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17398698
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17398741
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17398784
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17398824
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17407140
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17407183
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17407226
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17407269
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17407312
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17407355
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17407398
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17407441
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17407484
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17407527
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17407570
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17407613
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17407656
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17407699
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17407742
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17407785
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17407828
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17407871
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17407914
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17407957
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17408000
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17408043
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17408086
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17408129
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17408172
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17408215
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17408258
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17408301
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17408344
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17408387
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17408430
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17408473
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17408516
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17408559
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17408602
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17408645
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17408685
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17410035
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050001/17418484
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050002/17354516
Serious error: spatial orientation ambiguous (tag 0020,0037 not
found): 20160623/17050002/17371744
Unable to determine spatial orientation: old Siemens RGB header
does not report slice orient (DICOM 0020,0037)!
WARNING: Unable to determine slice direction: please check whether
slices are flipped
Warning: bogus spatial matrix (perhaps non-spatial image): inspect
spatial orientation
Convert 36 DICOM as 20160623/ep2d_diff_30dir_1av_ZoomIt_AP_23
(108x34x36x1)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/ep2d_diff_30dir_1av_ZoomIt_AP_23.nii"
Oh dear!!!!
Convert 36 DICOM as 20160623/ep2d_diff_30dir_1av_ZoomIt_AP_21
(108x34x36x1)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/ep2d_diff_30dir_1av_ZoomIt_AP_21.nii"
Oh dear!!!!
Convert 36 DICOM as 20160623/ep2d_diff_30dir_1av_ZoomIt_AP_22
(108x34x36x1)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/ep2d_diff_30dir_1av_ZoomIt_AP_22.nii"
Oh dear!!!!
Convert 100 DICOM as 20160623/ep2d_REST_ZOOMit_1.3x1.3x4.0_18
(96x36x36x100)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/ep2d_REST_ZOOMit_1.3x1.3x4.0_18.nii"
Oh dear!!!!
WARNING: DTI gradient directions only tested for axial (transverse)
acquisitions. Please validate bvec files.
Convert 31 DICOM as 20160623/ep2d_diff_30dir_1av_ZoomIt_AP_19
(108x34x36x31)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/ep2d_diff_30dir_1av_ZoomIt_AP_19.nii"
Oh dear!!!!
Convert 36 DICOM as 20160623/ep2d_diff_30dir_1av_ZoomIt_AP_20
(108x34x36x1)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/ep2d_diff_30dir_1av_ZoomIt_AP_20.nii"
Oh dear!!!!
slices not stacked: orientation varies (localizer?) [0 1 0 0 0 -1]
!= [1 0 0 0 1 0]
slices not stacked: orientation varies (localizer?) [0 1 0 0 0 -1]
!= [1 0 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [0 1 0 0 0 -1]
!= [1 0 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [0 1 0 0 0 -1]
!= [1 0 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [0 1 0 0 0 -1]
!= [1 0 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [0 1 0 0 0 -1]
!= [1 0 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [0 1 0 0 0 -1]
!= [1 0 0 0 1 0]
slices not stacked: orientation varies (localizer?) [0 1 0 0 0 -1]
!= [1 0 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [0 1 0 0 0 -1]
!= [1 0 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [0 1 0 0 0 -1]
!= [1 0 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [0 1 0 0 0 -1]
!= [1 0 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [0 1 0 0 0 -1]
!= [1 0 0 0 0 -1]
Convert 3 DICOM as 20160623/localizer_15 (512x512x3x1)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/localizer_15.nii"
Oh dear!!!!
slices not stacked: orientation varies (localizer?) [1 0 0 0 1 0]
!= [1 0 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 1 0]
!= [1 0 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 1 0]
!= [1 0 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 1 0]
!= [1 0 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 1 0]
!= [1 0 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 1 0]
!= [0 1 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 1 0]
!= [0 1 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 1 0]
!= [0 1 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 1 0]
!= [1 0 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 1 0]
!= [1 0 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 1 0]
!= [1 0 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 1 0]
!= [1 0 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 1 0]
!= [1 0 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 1 0]
!= [0 1 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 1 0]
!= [0 1 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 1 0]
!= [0 1 0 0 0 -1]
Convert 1 DICOM as 20160623/localizer_16 (512x512x1x1)
WARNING: check that 2D images are not mirrored.
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/localizer_16.nii"
Oh dear!!!!
slices not stacked: orientation varies (localizer?) [1 0 0 0 0 -1]
!= [0 1 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 0 -1]
!= [0 1 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 0 -1]
!= [0 1 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 0 -1]
!= [0 1 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 0 -1]
!= [0 1 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 0 -1]
!= [0 1 0 0 0 -1]
Convert 5 DICOM as 20160623/localizer_16a (512x512x5x1)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/localizer_16a.nii"
Oh dear!!!!
Convert 3 DICOM as 20160623/localizer_16b (512x512x3x1)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/localizer_16b.nii"
Oh dear!!!!
Convert 12 DICOM as 20160623/cerv_t1_tse_sag_17 (256x256x12x1)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/cerv_t1_tse_sag_17.nii"
Oh dear!!!!
slices not stacked: orientation varies (localizer?) [1 0 0 -0 1 0]
!= [1 0 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 -0 1 0]
!= [1 0 0 0 0 -1]
Convert 1 DICOM as 20160623/1.3.12.2.1107.5.2.43.66075.201_5001
(512x512x1x1)
WARNING: check that 2D images are not mirrored.
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/1.3.12.2.1107.5.2.43.66075.201_5001.nii"
Oh dear!!!!
Convert 1 DICOM as 20160623/1.3.12.2.1107.5.2.43.66075.201_5001a
(512x512x1x1)
WARNING: check that 2D images are not mirrored.
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/1.3.12.2.1107.5.2.43.66075.201_5001a.nii"
Oh dear!!!!
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
Convert 36 DICOM as 20160623/gre_field_mapping_3mm_13 (64x64x36x1)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/gre_field_mapping_3mm_13.nii"
Oh dear!!!!
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
Convert 36 DICOM as 20160623/gre_field_mapping_3mm_13_e2
(64x64x36x1)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/gre_field_mapping_3mm_13_e2.nii"
Oh dear!!!!
Convert 36 DICOM as 20160623/gre_field_mapping_3mm_14_e2_ph
(64x64x36x1)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/gre_field_mapping_3mm_14_e2_ph.nii"
Oh dear!!!!
slices not stacked: orientation varies (localizer?) [1 0 0 0 1 0]
!= [1 0 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 1 0]
!= [1 0 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 1 0]
!= [1 0 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 1 0]
!= [1 0 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 1 0]
!= [1 0 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 1 0]
!= [1 0 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 1 0]
!= [1 0 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 1 0]
!= [1 0 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 1 0]
!= [1 0 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 1 0]
!= [1 0 0 0 0 -1]
Convert 1 DICOM as 20160623/localizer_15a (512x512x1x1)
WARNING: check that 2D images are not mirrored.
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/localizer_15a.nii"
Oh dear!!!!
Convert 5 DICOM as 20160623/localizer_15b (512x512x5x1)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/localizer_15b.nii"
Oh dear!!!!
Convert 100 DICOM as 20160623/ep2d_bold_p2_FoV160_12
(112x112x41x100)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/ep2d_bold_p2_FoV160_12.nii"
Oh dear!!!!
Convert 128 DICOM as 20160623/AAHead_Scout_32ch-head-coil_8
(160x160x128x1)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/AAHead_Scout_32ch-head-coil_8.nii"
slices not stacked: orientation varies (localizer?) [-0.0018392
0.980703 0.195497 0.00444285 0.195504 -0.980693] != [0.568673
0.794868 0.211648 9.34477e-05 0.25724 -0.966348]
slices not stacked: orientation varies (localizer?) [-0.0018392
0.980703 0.195497 0.00444285 0.195504 -0.980693] != [-0.00126261
0.997552 0.0699118 0.00463976 0.069917 -0.997542]
slices not stacked: orientation varies (localizer?) [-0.0018392
0.980703 0.195497 0.00444285 0.195504 -0.980693] != [-0.551399
0.806181 0.214551 9.34477e-05 0.25724 -0.966348]
slices not stacked: orientation varies (localizer?) [-0.0018392
0.980703 0.195497 0.00444285 0.195504 -0.980693] != [0.568673
0.794868 0.211648 9.34477e-05 0.25724 -0.966348]
slices not stacked: orientation varies (localizer?) [-0.0018392
0.980703 0.195497 0.00444285 0.195504 -0.980693] != [-0.00126261
0.997552 0.0699118 0.00463976 0.069917 -0.997542]
slices not stacked: orientation varies (localizer?) [-0.0018392
0.980703 0.195497 0.00444285 0.195504 -0.980693] != [-0.551399
0.806181 0.214551 9.34477e-05 0.25724 -0.966348]
Convert 2 DICOM as 20160623/AAHead_Scout_32ch-head-coil_9
(162x162x2x1)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/AAHead_Scout_32ch-head-coil_9.nii"
slices not stacked: orientation varies (localizer?) [0.568673
0.794868 0.211648 9.34477e-05 0.25724 -0.966348] != [-0.00126261
0.997552 0.0699118 0.00463976 0.069917 -0.997542]
slices not stacked: orientation varies (localizer?) [0.568673
0.794868 0.211648 9.34477e-05 0.25724 -0.966348] != [-0.551399
0.806181 0.214551 9.34477e-05 0.25724 -0.966348]
slices not stacked: orientation varies (localizer?) [0.568673
0.794868 0.211648 9.34477e-05 0.25724 -0.966348] != [-0.0018392
0.980703 0.195497 0.00444285 0.195504 -0.980693]
slices not stacked: orientation varies (localizer?) [0.568673
0.794868 0.211648 9.34477e-05 0.25724 -0.966348] != [-0.00126261
0.997552 0.0699118 0.00463976 0.069917 -0.997542]
slices not stacked: orientation varies (localizer?) [0.568673
0.794868 0.211648 9.34477e-05 0.25724 -0.966348] != [-0.551399
0.806181 0.214551 9.34477e-05 0.25724 -0.966348]
slices not stacked: orientation varies (localizer?) [0.568673
0.794868 0.211648 9.34477e-05 0.25724 -0.966348] != [-0.0018392
0.980703 0.195497 0.00444285 0.195504 -0.980693]
Convert 1 DICOM as 20160623/AAHead_Scout_32ch-head-coil_9a
(162x162x1x1)
WARNING: check that 2D images are not mirrored.
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/AAHead_Scout_32ch-head-coil_9a.nii"
slices not stacked: orientation varies (localizer?) [-0.00126261
0.997552 0.0699118 0.00463976 0.069917 -0.997542] != [-0.551399
0.806181 0.214551 9.34477e-05 0.25724 -0.966348]
slices not stacked: orientation varies (localizer?) [-0.00126261
0.997552 0.0699118 0.00463976 0.069917 -0.997542] != [-0.0018392
0.980703 0.195497 0.00444285 0.195504 -0.980693]
slices not stacked: orientation varies (localizer?) [-0.00126261
0.997552 0.0699118 0.00463976 0.069917 -0.997542] != [-0.551399
0.806181 0.214551 9.34477e-05 0.25724 -0.966348]
slices not stacked: orientation varies (localizer?) [-0.00126261
0.997552 0.0699118 0.00463976 0.069917 -0.997542] != [-0.0018392
0.980703 0.195497 0.00444285 0.195504 -0.980693]
Convert 1 DICOM as 20160623/AAHead_Scout_32ch-head-coil_9b
(162x162x1x1)
WARNING: check that 2D images are not mirrored.
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/AAHead_Scout_32ch-head-coil_9b.nii"
slices not stacked: orientation varies (localizer?) [-0.551399
0.806181 0.214551 9.34477e-05 0.25724 -0.966348] != [-0.0018392
0.980703 0.195497 0.00444285 0.195504 -0.980693]
slices not stacked: orientation varies (localizer?) [-0.551399
0.806181 0.214551 9.34477e-05 0.25724 -0.966348] != [-0.0018392
0.980703 0.195497 0.00444285 0.195504 -0.980693]
Convert 1 DICOM as 20160623/AAHead_Scout_32ch-head-coil_9c
(162x162x1x1)
WARNING: check that 2D images are not mirrored.
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/AAHead_Scout_32ch-head-coil_9c.nii"
slices not stacked: orientation varies (localizer?) [0.99876
0.0105047 0.0486544 0.0477972 0.0704361 -0.99637] != [0.999988
0.000935129 0.00471668 0.00463976 0.069917 -0.997542]
slices not stacked: orientation varies (localizer?) [0.99876
0.0105047 0.0486544 0.0477972 0.0704361 -0.99637] != [0.999995
0.00139715 0.0029523 0.00286575 0.0583541 -0.998292]
slices not stacked: orientation varies (localizer?) [0.99876
0.0105047 0.0486544 0.0477972 0.0704361 -0.99637] != [0.999988
0.000935129 0.00471668 0.00463976 0.069917 -0.997542]
slices not stacked: orientation varies (localizer?) [0.99876
0.0105047 0.0486544 0.0477972 0.0704361 -0.99637] != [0.999995
0.00139715 0.0029523 0.00286575 0.0583541 -0.998292]
Convert 1 DICOM as 20160623/AAHead_Scout_32ch-head-coil_10
(162x162x1x1)
WARNING: check that 2D images are not mirrored.
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/AAHead_Scout_32ch-head-coil_10.nii"
slices not stacked: orientation varies (localizer?) [0.999988
0.000935129 0.00471668 0.00463976 0.069917 -0.997542] != [0.999995
0.00139715 0.0029523 0.00286575 0.0583541 -0.998292]
slices not stacked: orientation varies (localizer?) [0.999988
0.000935129 0.00471668 0.00463976 0.069917 -0.997542] != [0.999995
0.00139715 0.0029523 0.00286575 0.0583541 -0.998292]
Convert 1 DICOM as 20160623/AAHead_Scout_32ch-head-coil_10a
(162x162x1x1)
WARNING: check that 2D images are not mirrored.
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/AAHead_Scout_32ch-head-coil_10a.nii"
Convert 1 DICOM as 20160623/AAHead_Scout_32ch-head-coil_10b
(162x162x1x1)
WARNING: check that 2D images are not mirrored.
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/AAHead_Scout_32ch-head-coil_10b.nii"
slices not stacked: orientation varies (localizer?) [0.999988
0.000935129 0.00471668 -0.000306927 0.99132 -0.131467] != [0.999998
0.00202172 0.000634879 -0.002117 0.966345 0.257239]
slices not stacked: orientation varies (localizer?) [0.999988
0.000935129 0.00471668 -0.000306927 0.99132 -0.131467] != [0.99876
0.0105047 0.0486544 -0.0138936 0.997461 0.0698467]
slices not stacked: orientation varies (localizer?) [0.999988
0.000935129 0.00471668 -0.000306927 0.99132 -0.131467] != [0.999998
0.00202172 0.000634879 -0.002117 0.966345 0.257239]
slices not stacked: orientation varies (localizer?) [0.999988
0.000935129 0.00471668 -0.000306927 0.99132 -0.131467] != [0.99876
0.0105047 0.0486544 -0.0138936 0.997461 0.0698467]
Convert 1 DICOM as 20160623/AAHead_Scout_32ch-head-coil_11
(162x162x1x1)
WARNING: check that 2D images are not mirrored.
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/AAHead_Scout_32ch-head-coil_11.nii"
slices not stacked: orientation varies (localizer?) [0.999998
0.00202172 0.000634879 -0.002117 0.966345 0.257239] != [0.99876
0.0105047 0.0486544 -0.0138936 0.997461 0.0698467]
slices not stacked: orientation varies (localizer?) [0.999998
0.00202172 0.000634879 -0.002117 0.966345 0.257239] != [0.99876
0.0105047 0.0486544 -0.0138936 0.997461 0.0698467]
Convert 1 DICOM as 20160623/AAHead_Scout_32ch-head-coil_11a
(162x162x1x1)
WARNING: check that 2D images are not mirrored.
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/AAHead_Scout_32ch-head-coil_11a.nii"
Convert 1 DICOM as 20160623/AAHead_Scout_32ch-head-coil_11b
(162x162x1x1)
WARNING: check that 2D images are not mirrored.
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/AAHead_Scout_32ch-head-coil_11b.nii"
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1)
Convert 36 DICOM as 20160623/gre_field_mapping_3mm_6_e2
(64x64x36x1)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/gre_field_mapping_3mm_6_e2.nii"
Oh dear!!!!
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2)
Convert 36 DICOM as 20160623/gre_field_mapping_3mm_6 (64x64x36x1)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/gre_field_mapping_3mm_6.nii"
Oh dear!!!!
Convert 36 DICOM as 20160623/gre_field_mapping_3mm_7_e2_ph
(64x64x36x1)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/gre_field_mapping_3mm_7_e2_ph.nii"
Oh dear!!!!
Convert 100 DICOM as 20160623/ep2d_bold_p2_FoV160_5
(112x112x41x100)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/ep2d_bold_p2_FoV160_5.nii"
Oh dear!!!!
Convert 128 DICOM as 20160623/AAHead_Scout_32ch-head-coil_1
(160x160x128x1)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/AAHead_Scout_32ch-head-coil_1.nii"
slices not stacked: orientation varies (localizer?) [-0.0148874
0.989882 0.141107 0.0217255 0.141409 -0.989713] != [0.567597
0.802073 0.185774 0.0129807 0.216897 -0.976108]
slices not stacked: orientation varies (localizer?) [-0.0148874
0.989882 0.141107 0.0217255 0.141409 -0.989713] != [-0.0125415
0.99923 0.0371663 0.023159 0.0374496 -0.99903]
slices not stacked: orientation varies (localizer?) [-0.0148874
0.989882 0.141107 0.0217255 0.141409 -0.989713] != [-0.557663
0.811843 0.17298 0.0129807 0.216897 -0.976108]
slices not stacked: orientation varies (localizer?) [-0.0148874
0.989882 0.141107 0.0217255 0.141409 -0.989713] != [0.567597
0.802073 0.185774 0.0129807 0.216897 -0.976108]
slices not stacked: orientation varies (localizer?) [-0.0148874
0.989882 0.141107 0.0217255 0.141409 -0.989713] != [-0.0125415
0.99923 0.0371663 0.023159 0.0374496 -0.99903]
slices not stacked: orientation varies (localizer?) [-0.0148874
0.989882 0.141107 0.0217255 0.141409 -0.989713] != [-0.557663
0.811843 0.17298 0.0129807 0.216897 -0.976108]
Convert 2 DICOM as 20160623/AAHead_Scout_32ch-head-coil_2
(162x162x2x1)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/AAHead_Scout_32ch-head-coil_2.nii"
slices not stacked: orientation varies (localizer?) [0.567597
0.802073 0.185774 0.0129807 0.216897 -0.976108] != [-0.0125415
0.99923 0.0371663 0.023159 0.0374496 -0.99903]
slices not stacked: orientation varies (localizer?) [0.567597
0.802073 0.185774 0.0129807 0.216897 -0.976108] != [-0.557663
0.811843 0.17298 0.0129807 0.216897 -0.976108]
slices not stacked: orientation varies (localizer?) [0.567597
0.802073 0.185774 0.0129807 0.216897 -0.976108] != [-0.0148874
0.989882 0.141107 0.0217255 0.141409 -0.989713]
slices not stacked: orientation varies (localizer?) [0.567597
0.802073 0.185774 0.0129807 0.216897 -0.976108] != [-0.0125415
0.99923 0.0371663 0.023159 0.0374496 -0.99903]
slices not stacked: orientation varies (localizer?) [0.567597
0.802073 0.185774 0.0129807 0.216897 -0.976108] != [-0.557663
0.811843 0.17298 0.0129807 0.216897 -0.976108]
slices not stacked: orientation varies (localizer?) [0.567597
0.802073 0.185774 0.0129807 0.216897 -0.976108] != [-0.0148874
0.989882 0.141107 0.0217255 0.141409 -0.989713]
Convert 1 DICOM as 20160623/AAHead_Scout_32ch-head-coil_2a
(162x162x1x1)
WARNING: check that 2D images are not mirrored.
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/AAHead_Scout_32ch-head-coil_2a.nii"
slices not stacked: orientation varies (localizer?) [-0.0125415
0.99923 0.0371663 0.023159 0.0374496 -0.99903] != [-0.557663
0.811843 0.17298 0.0129807 0.216897 -0.976108]
slices not stacked: orientation varies (localizer?) [-0.0125415
0.99923 0.0371663 0.023159 0.0374496 -0.99903] != [-0.0148874
0.989882 0.141107 0.0217255 0.141409 -0.989713]
slices not stacked: orientation varies (localizer?) [-0.0125415
0.99923 0.0371663 0.023159 0.0374496 -0.99903] != [-0.557663
0.811843 0.17298 0.0129807 0.216897 -0.976108]
slices not stacked: orientation varies (localizer?) [-0.0125415
0.99923 0.0371663 0.023159 0.0374496 -0.99903] != [-0.0148874
0.989882 0.141107 0.0217255 0.141409 -0.989713]
Convert 1 DICOM as 20160623/AAHead_Scout_32ch-head-coil_2b
(162x162x1x1)
WARNING: check that 2D images are not mirrored.
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/AAHead_Scout_32ch-head-coil_2b.nii"
slices not stacked: orientation varies (localizer?) [-0.557663
0.811843 0.17298 0.0129807 0.216897 -0.976108] != [-0.0148874
0.989882 0.141107 0.0217255 0.141409 -0.989713]
slices not stacked: orientation varies (localizer?) [-0.557663
0.811843 0.17298 0.0129807 0.216897 -0.976108] != [-0.0148874
0.989882 0.141107 0.0217255 0.141409 -0.989713]
Convert 1 DICOM as 20160623/AAHead_Scout_32ch-head-coil_2c
(162x162x1x1)
WARNING: check that 2D images are not mirrored.
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/AAHead_Scout_32ch-head-coil_2c.nii"
slices not stacked: orientation varies (localizer?) [0.997796
0.0220598 0.062575 0.0617001 0.0383292 -0.997359] != [0.999653
0.0116686 0.0236109 0.023159 0.0374496 -0.99903]
slices not stacked: orientation varies (localizer?) [0.997796
0.0220598 0.062575 0.0617001 0.0383292 -0.997359] != [0.999635
0.00506459 0.0265466 0.0264765 0.0134521 -0.999559]
slices not stacked: orientation varies (localizer?) [0.997796
0.0220598 0.062575 0.0617001 0.0383292 -0.997359] != [0.999653
0.0116686 0.0236109 0.023159 0.0374496 -0.99903]
slices not stacked: orientation varies (localizer?) [0.997796
0.0220598 0.062575 0.0617001 0.0383292 -0.997359] != [0.999635
0.00506459 0.0265466 0.0264765 0.0134521 -0.999559]
Convert 1 DICOM as 20160623/AAHead_Scout_32ch-head-coil_3
(162x162x1x1)
WARNING: check that 2D images are not mirrored.
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/AAHead_Scout_32ch-head-coil_3.nii"
slices not stacked: orientation varies (localizer?) [0.999653
0.0116686 0.0236109 0.023159 0.0374496 -0.99903] != [0.999635
0.00506459 0.0265466 0.0264765 0.0134521 -0.999559]
slices not stacked: orientation varies (localizer?) [0.999653
0.0116686 0.0236109 0.023159 0.0374496 -0.99903] != [0.999635
0.00506459 0.0265466 0.0264765 0.0134521 -0.999559]
Convert 1 DICOM as 20160623/AAHead_Scout_32ch-head-coil_3a
(162x162x1x1)
WARNING: check that 2D images are not mirrored.
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/AAHead_Scout_32ch-head-coil_3a.nii"
Convert 1 DICOM as 20160623/AAHead_Scout_32ch-head-coil_3b
(162x162x1x1)
WARNING: check that 2D images are not mirrored.
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/AAHead_Scout_32ch-head-coil_3b.nii"
slices not stacked: orientation varies (localizer?) [0.999653
0.0116686 0.0236109 -0.00732342 0.984295 -0.176379] != [0.999779
0.0133043 0.0162518 -0.0165114 0.976104 0.216676]
slices not stacked: orientation varies (localizer?) [0.999653
0.0116686 0.0236109 -0.00732342 0.984295 -0.176379] != [0.997796
0.0220598 0.062575 -0.0244 0.999022 0.0368837]
slices not stacked: orientation varies (localizer?) [0.999653
0.0116686 0.0236109 -0.00732342 0.984295 -0.176379] != [0.999779
0.0133043 0.0162518 -0.0165114 0.976104 0.216676]
slices not stacked: orientation varies (localizer?) [0.999653
0.0116686 0.0236109 -0.00732342 0.984295 -0.176379] != [0.997796
0.0220598 0.062575 -0.0244 0.999022 0.0368837]
Convert 1 DICOM as 20160623/AAHead_Scout_32ch-head-coil_4
(162x162x1x1)
WARNING: check that 2D images are not mirrored.
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/AAHead_Scout_32ch-head-coil_4.nii"
slices not stacked: orientation varies (localizer?) [0.999779
0.0133043 0.0162518 -0.0165114 0.976104 0.216676] != [0.997796
0.0220598 0.062575 -0.0244 0.999022 0.0368837]
slices not stacked: orientation varies (localizer?) [0.999779
0.0133043 0.0162518 -0.0165114 0.976104 0.216676] != [0.997796
0.0220598 0.062575 -0.0244 0.999022 0.0368837]
Convert 1 DICOM as 20160623/AAHead_Scout_32ch-head-coil_4a
(162x162x1x1)
WARNING: check that 2D images are not mirrored.
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/AAHead_Scout_32ch-head-coil_4a.nii"
Convert 1 DICOM as 20160623/AAHead_Scout_32ch-head-coil_4b
(162x162x1x1)
WARNING: check that 2D images are not mirrored.
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/AAHead_Scout_32ch-head-coil_4b.nii"
Unable to determine spatial orientation: old Siemens RGB header
does not report slice orient (DICOM 0020,0037)!
WARNING: Unable to determine slice direction: please check whether
slices are flipped
Warning: bogus spatial matrix (perhaps non-spatial image): inspect
spatial orientation
Convert 36 DICOM as 20160623/ep2d_diff_30dir_1av_ZoomIt_APT_56
(108x34x36x1)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/ep2d_diff_30dir_1av_ZoomIt_APT_56.nii"
Oh dear!!!!
Convert 36 DICOM as 20160623/ep2d_diff_30dir_1av_ZoomIt_APT_54
(108x34x36x1)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/ep2d_diff_30dir_1av_ZoomIt_APT_54.nii"
Oh dear!!!!
Convert 36 DICOM as 20160623/ep2d_diff_30dir_1av_ZoomIt_APT_55
(108x34x36x1)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/ep2d_diff_30dir_1av_ZoomIt_APT_55.nii"
Oh dear!!!!
Unable to determine spatial orientation: old Siemens RGB header
does not report slice orient (DICOM 0020,0037)!
WARNING: Unable to determine slice direction: please check whether
slices are flipped
Warning: bogus spatial matrix (perhaps non-spatial image): inspect
spatial orientation
Convert 36 DICOM as 20160623/ep2d_diff_30dir_1av_ZoomIt_PA_50
(108x34x36x1)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/ep2d_diff_30dir_1av_ZoomIt_PA_50.nii"
Oh dear!!!!
WARNING: DTI gradient directions only tested for axial (transverse)
acquisitions. Please validate bvec files.
Convert 31 DICOM as 20160623/ep2d_diff_30dir_1av_ZoomIt_APT_52
(108x34x36x31)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/ep2d_diff_30dir_1av_ZoomIt_APT_52.nii"
Oh dear!!!!
Convert 36 DICOM as 20160623/ep2d_diff_30dir_1av_ZoomIt_APT_53
(108x34x36x1)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/ep2d_diff_30dir_1av_ZoomIt_APT_53.nii"
Oh dear!!!!
Convert 36 DICOM as 20160623/ep2d_diff_30dir_1av_ZoomIt_PA_47
(108x34x36x1)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/ep2d_diff_30dir_1av_ZoomIt_PA_47.nii"
Oh dear!!!!
Convert 36 DICOM as 20160623/ep2d_diff_30dir_1av_ZoomIt_PA_48
(108x34x36x1)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/ep2d_diff_30dir_1av_ZoomIt_PA_48.nii"
Oh dear!!!!
Convert 36 DICOM as 20160623/ep2d_diff_30dir_1av_ZoomIt_PA_49
(108x34x36x1)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/ep2d_diff_30dir_1av_ZoomIt_PA_49.nii"
Oh dear!!!!
Convert 36 DICOM as 20160623/ep2d_diff_60dir_1av_ZoomIt_AP_43
(108x34x36x1)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/ep2d_diff_60dir_1av_ZoomIt_AP_43.nii"
Oh dear!!!!
Unable to determine spatial orientation: old Siemens RGB header
does not report slice orient (DICOM 0020,0037)!
WARNING: Unable to determine slice direction: please check whether
slices are flipped
Warning: bogus spatial matrix (perhaps non-spatial image): inspect
spatial orientation
Convert 36 DICOM as 20160623/ep2d_diff_60dir_1av_ZoomIt_AP_44
(108x34x36x1)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/ep2d_diff_60dir_1av_ZoomIt_AP_44.nii"
Oh dear!!!!
WARNING: DTI gradient directions only tested for axial (transverse)
acquisitions. Please validate bvec files.
Convert 31 DICOM as 20160623/ep2d_diff_30dir_1av_ZoomIt_PA_46
(108x34x36x31)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/ep2d_diff_30dir_1av_ZoomIt_PA_46.nii"
Oh dear!!!!
WARNING: DTI gradient directions only tested for axial (transverse)
acquisitions. Please validate bvec files.
Convert 31 DICOM as 20160623/ep2d_diff_60dir_1av_ZoomIt_AP_40
(108x34x36x31)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/ep2d_diff_60dir_1av_ZoomIt_AP_40.nii"
Oh dear!!!!
Convert 36 DICOM as 20160623/ep2d_diff_60dir_1av_ZoomIt_AP_41
(108x34x36x1)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/ep2d_diff_60dir_1av_ZoomIt_AP_41.nii"
Oh dear!!!!
Convert 36 DICOM as 20160623/ep2d_diff_60dir_1av_ZoomIt_AP_42
(108x34x36x1)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/ep2d_diff_60dir_1av_ZoomIt_AP_42.nii"
Oh dear!!!!
Convert 100 DICOM as 20160623/ep2d_REST_ZOOMit_1.3x1.3x4.0_39
(96x36x36x100)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/ep2d_REST_ZOOMit_1.3x1.3x4.0_39.nii"
Oh dear!!!!
Convert 36 DICOM as 20160623/ep2d_diff_30dir_1av_ZoomIt_APT_34
(108x34x36x1)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/ep2d_diff_30dir_1av_ZoomIt_APT_34.nii"
Oh dear!!!!
Unable to determine spatial orientation: old Siemens RGB header
does not report slice orient (DICOM 0020,0037)!
WARNING: Unable to determine slice direction: please check whether
slices are flipped
Warning: bogus spatial matrix (perhaps non-spatial image): inspect
spatial orientation
Convert 36 DICOM as 20160623/ep2d_diff_30dir_1av_ZoomIt_APT_35
(108x34x36x1)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/ep2d_diff_30dir_1av_ZoomIt_APT_35.nii"
Oh dear!!!!
slices not stacked: orientation varies (localizer?) [1 0 0 0 1 0]
!= [1 0 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 1 0]
!= [1 0 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 1 0]
!= [1 0 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 1 0]
!= [1 0 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 1 0]
!= [1 0 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 1 0]
!= [0 1 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 1 0]
!= [0 1 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 1 0]
!= [0 1 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 1 0]
!= [1 0 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 1 0]
!= [1 0 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 1 0]
!= [1 0 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 1 0]
!= [1 0 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 1 0]
!= [1 0 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 1 0]
!= [0 1 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 1 0]
!= [0 1 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 1 0]
!= [0 1 0 0 0 -1]
Convert 1 DICOM as 20160623/localizer_37 (512x512x1x1)
WARNING: check that 2D images are not mirrored.
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/localizer_37.nii"
Oh dear!!!!
slices not stacked: orientation varies (localizer?) [1 0 0 0 0 -1]
!= [0 1 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 0 -1]
!= [0 1 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 0 -1]
!= [0 1 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 0 -1]
!= [0 1 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 0 -1]
!= [0 1 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 0 0 -1]
!= [0 1 0 0 0 -1]
Convert 5 DICOM as 20160623/localizer_37a (512x512x5x1)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/localizer_37a.nii"
Oh dear!!!!
Convert 3 DICOM as 20160623/localizer_37b (512x512x3x1)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/localizer_37b.nii"
Oh dear!!!!
Convert 12 DICOM as 20160623/cerv_t1_tse_sag_38 (256x256x12x1)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/cerv_t1_tse_sag_38.nii"
Oh dear!!!!
slices not stacked: orientation varies (localizer?) [1 0 0 -0 1 0]
!= [1 0 0 0 0 -1]
slices not stacked: orientation varies (localizer?) [1 0 0 -0 1 0]
!= [1 0 0 0 0 -1]
Convert 1 DICOM as 20160623/1.3.12.2.1107.5.2.43.66075.201_5002
(512x512x1x1)
WARNING: check that 2D images are not mirrored.
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/1.3.12.2.1107.5.2.43.66075.201_5002.nii"
Oh dear!!!!
Convert 1 DICOM as 20160623/1.3.12.2.1107.5.2.43.66075.201_5002a
(512x512x1x1)
WARNING: check that 2D images are not mirrored.
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/1.3.12.2.1107.5.2.43.66075.201_5002a.nii"
Oh dear!!!!
WARNING: DTI gradient directions only tested for axial (transverse)
acquisitions. Please validate bvec files.
Convert 31 DICOM as 20160623/ep2d_diff_30dir_1av_ZoomIt_APT_31
(108x34x36x31)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/ep2d_diff_30dir_1av_ZoomIt_APT_31.nii"
Oh dear!!!!
Convert 36 DICOM as 20160623/ep2d_diff_30dir_1av_ZoomIt_APT_32
(108x34x36x1)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/ep2d_diff_30dir_1av_ZoomIt_APT_32.nii"
Oh dear!!!!
Convert 36 DICOM as 20160623/ep2d_diff_30dir_1av_ZoomIt_APT_33
(108x34x36x1)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/ep2d_diff_30dir_1av_ZoomIt_APT_33.nii"
Oh dear!!!!
Convert 36 DICOM as 20160623/ep2d_diff_30dir_1av_ZoomIt_PA_27
(108x34x36x1)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/ep2d_diff_30dir_1av_ZoomIt_PA_27.nii"
Oh dear!!!!
Convert 36 DICOM as 20160623/ep2d_diff_30dir_1av_ZoomIt_PA_28
(108x34x36x1)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/ep2d_diff_30dir_1av_ZoomIt_PA_28.nii"
Oh dear!!!!
Unable to determine spatial orientation: old Siemens RGB header
does not report slice orient (DICOM 0020,0037)!
WARNING: Unable to determine slice direction: please check whether
slices are flipped
Warning: bogus spatial matrix (perhaps non-spatial image): inspect
spatial orientation
Convert 36 DICOM as 20160623/ep2d_diff_30dir_1av_ZoomIt_PA_29
(108x34x36x1)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/ep2d_diff_30dir_1av_ZoomIt_PA_29.nii"
Oh dear!!!!
WARNING: DTI gradient directions only tested for axial (transverse)
acquisitions. Please validate bvec files.
Convert 31 DICOM as 20160623/ep2d_diff_30dir_1av_ZoomIt_PA_25
(108x34x36x31)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/ep2d_diff_30dir_1av_ZoomIt_PA_25.nii"
Oh dear!!!!
Convert 36 DICOM as 20160623/ep2d_diff_30dir_1av_ZoomIt_PA_26
(108x34x36x1)
compress: "/usr/local/bin/pigz_mricron" -n -f
"20160623/ep2d_diff_30dir_1av_ZoomIt_PA_26.nii"
Oh dear!!!!
Conversion required 1.374470 seconds.
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