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help > Error at step 5/7: Importing ROI data
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Mar 20, 2017 07:03 PM | Lavinia Carmen Uscatescu
Error at step 5/7: Importing ROI data
Dear all,
The error message I receive while trying to run the connectivity analysis in conn toolbox occurs at step 5/7, while importing the ROIs. It reads as follows:
ERROR DESCRIPTION:
Error using nifti/subsasgn>assigndat (line 384)
Unknown filename extension (.nii,1).
Error in nifti/subsasgn>fun (line 76)
obj = assigndat(obj,val);
Error in nifti/subsasgn (line 20)
obji = fun(obji,subs,val);
Error in spm_create_vol>create_vol (line 79)
N.dat = dat;
Error in spm_create_vol (line 13)
v = create_vol(V(i));
Error in spm_write_vol (line 83)
V = spm_create_vol(V);
Error in conn_process (line 619)
V0.fname=conn_prepend('e',CONN_x.Setup.rois.files{nsub}{nroi}{nses}{1});spm_write_vol(V0,X1);
Error in conn_process (line 15)
case 'setup', disp(['CONN: RUNNING SETUP STEP']); conn_process([0:4,4.5,5]);
Error in conn (line 1122)
else conn_process(psteps);
Error in conn_menumanager (line 120)
feval(CONN_MM.MENU{n0}.callback{n1}{1},CONN_MM.MENU{n0}.callback{n1}{2:end});
CONN v.17.b
SPM12 + ArtRepair DEM Diffusion FieldMap LI MEEGtools TFCE Variability Volumes aal bspmview cat12 marsbar mfp rwls tsdiffana
Matlab v.2013a
storage: 342.6Gb available
Warning: Contents.m overloaded by version in folder /opt/software/spm/spm12_toolboxes/cat12
Warning: spm_check_version.m overloaded by version in folder /opt/software/spm/spm8/toolbox/PPPI
I hope someone can provide some useful advice.
Best,
Lavinia Uscatescu
The error message I receive while trying to run the connectivity analysis in conn toolbox occurs at step 5/7, while importing the ROIs. It reads as follows:
ERROR DESCRIPTION:
Error using nifti/subsasgn>assigndat (line 384)
Unknown filename extension (.nii,1).
Error in nifti/subsasgn>fun (line 76)
obj = assigndat(obj,val);
Error in nifti/subsasgn (line 20)
obji = fun(obji,subs,val);
Error in spm_create_vol>create_vol (line 79)
N.dat = dat;
Error in spm_create_vol (line 13)
v = create_vol(V(i));
Error in spm_write_vol (line 83)
V = spm_create_vol(V);
Error in conn_process (line 619)
V0.fname=conn_prepend('e',CONN_x.Setup.rois.files{nsub}{nroi}{nses}{1});spm_write_vol(V0,X1);
Error in conn_process (line 15)
case 'setup', disp(['CONN: RUNNING SETUP STEP']); conn_process([0:4,4.5,5]);
Error in conn (line 1122)
else conn_process(psteps);
Error in conn_menumanager (line 120)
feval(CONN_MM.MENU{n0}.callback{n1}{1},CONN_MM.MENU{n0}.callback{n1}{2:end});
CONN v.17.b
SPM12 + ArtRepair DEM Diffusion FieldMap LI MEEGtools TFCE Variability Volumes aal bspmview cat12 marsbar mfp rwls tsdiffana
Matlab v.2013a
storage: 342.6Gb available
Warning: Contents.m overloaded by version in folder /opt/software/spm/spm12_toolboxes/cat12
Warning: spm_check_version.m overloaded by version in folder /opt/software/spm/spm8/toolbox/PPPI
I hope someone can provide some useful advice.
Best,
Lavinia Uscatescu
Mar 20, 2017 08:03 PM | Shady El Damaty - Georgetown University
RE: Error at step 5/7: Importing ROI data
I think this is because you have files added to your matlab path
that are conflicting with each other (i.e. known in the computer
science world as overloading). You need to remove cat12 from the
MATLAB path (use the path tool) then restart matlab.
Mar 23, 2017 07:03 PM | Alfonso Nieto-Castanon - Boston University
RE: Error at step 5/7: Importing ROI data
Dear Lavinia,
Thanks for reporting this, I have included a patch for this issue in the latest release (17c) just uploaded (if I am interpreting correctly this error arises because in previous releases you could not define any of the gray/white/csf mask files from a 4d nifti file, as you could with other ROIs; this has been fixed in the latest release). Let me know if you still run into any issues
Best
Alfonso
Originally posted by Lavinia Carmen Uscatescu:
Thanks for reporting this, I have included a patch for this issue in the latest release (17c) just uploaded (if I am interpreting correctly this error arises because in previous releases you could not define any of the gray/white/csf mask files from a 4d nifti file, as you could with other ROIs; this has been fixed in the latest release). Let me know if you still run into any issues
Best
Alfonso
Originally posted by Lavinia Carmen Uscatescu:
Dear all,
The error message I receive while trying to run the connectivity analysis in conn toolbox occurs at step 5/7, while importing the ROIs. It reads as follows:
ERROR DESCRIPTION:
Error using nifti/subsasgn>assigndat (line 384)
Unknown filename extension (.nii,1).
Error in nifti/subsasgn>fun (line 76)
obj = assigndat(obj,val);
Error in nifti/subsasgn (line 20)
obji = fun(obji,subs,val);
Error in spm_create_vol>create_vol (line 79)
N.dat = dat;
Error in spm_create_vol (line 13)
v = create_vol(V(i));
Error in spm_write_vol (line 83)
V = spm_create_vol(V);
Error in conn_process (line 619)
V0.fname=conn_prepend('e',CONN_x.Setup.rois.files{nsub}{nroi}{nses}{1});spm_write_vol(V0,X1);
Error in conn_process (line 15)
case 'setup', disp(['CONN: RUNNING SETUP STEP']); conn_process([0:4,4.5,5]);
Error in conn (line 1122)
else conn_process(psteps);
Error in conn_menumanager (line 120)
feval(CONN_MM.MENU{n0}.callback{n1}{1},CONN_MM.MENU{n0}.callback{n1}{2:end});
CONN v.17.b
SPM12 + ArtRepair DEM Diffusion FieldMap LI MEEGtools TFCE Variability Volumes aal bspmview cat12 marsbar mfp rwls tsdiffana
Matlab v.2013a
storage: 342.6Gb available
Warning: Contents.m overloaded by version in folder /opt/software/spm/spm12_toolboxes/cat12
Warning: spm_check_version.m overloaded by version in folder /opt/software/spm/spm8/toolbox/PPPI
I hope someone can provide some useful advice.
Best,
Lavinia Uscatescu
The error message I receive while trying to run the connectivity analysis in conn toolbox occurs at step 5/7, while importing the ROIs. It reads as follows:
ERROR DESCRIPTION:
Error using nifti/subsasgn>assigndat (line 384)
Unknown filename extension (.nii,1).
Error in nifti/subsasgn>fun (line 76)
obj = assigndat(obj,val);
Error in nifti/subsasgn (line 20)
obji = fun(obji,subs,val);
Error in spm_create_vol>create_vol (line 79)
N.dat = dat;
Error in spm_create_vol (line 13)
v = create_vol(V(i));
Error in spm_write_vol (line 83)
V = spm_create_vol(V);
Error in conn_process (line 619)
V0.fname=conn_prepend('e',CONN_x.Setup.rois.files{nsub}{nroi}{nses}{1});spm_write_vol(V0,X1);
Error in conn_process (line 15)
case 'setup', disp(['CONN: RUNNING SETUP STEP']); conn_process([0:4,4.5,5]);
Error in conn (line 1122)
else conn_process(psteps);
Error in conn_menumanager (line 120)
feval(CONN_MM.MENU{n0}.callback{n1}{1},CONN_MM.MENU{n0}.callback{n1}{2:end});
CONN v.17.b
SPM12 + ArtRepair DEM Diffusion FieldMap LI MEEGtools TFCE Variability Volumes aal bspmview cat12 marsbar mfp rwls tsdiffana
Matlab v.2013a
storage: 342.6Gb available
Warning: Contents.m overloaded by version in folder /opt/software/spm/spm12_toolboxes/cat12
Warning: spm_check_version.m overloaded by version in folder /opt/software/spm/spm8/toolbox/PPPI
I hope someone can provide some useful advice.
Best,
Lavinia Uscatescu