Hello,

I am looking into second level ROI-to-ROI analyses and am hoping to calculate average within- and between- network correlations for each of the networks of ROIs in two separate RSFC runs.  

For example, if I had 3 networks, each with 5 ROIs, I would be trying to do two things:

1)  to obtain an average within-network correlation during run1 and during run2 for each of the three networks (specifically I am looking for a single average correlation among the 5 ROIs in network 1 at run1 and then their average correlation at run 3--and then I would do the same calculation for the other two networks separately).  

2)  to obtain between network average correlations for each network (specifically I am looking for a single average correlation for 5 ROIs in network 1 with the 10 ROIs comprising networks 2 and 3, calculating this at run1 and then again at run 3--and tthen I would do the same calculation for the other two networks separately).

Is this possible to do in CONN, and, if so, how might I go about obtaining these measures?

Thank you so much for such a great program and for any help on this question you can give me!

Best,

Ruth