I have only brainaligner on my Fedora machine and I don't have network connection on it. I would like to do as less as possible on this isolated computer.

So I think I will use ImageJ and write in python to deal with the DF. I have a small problem with the header. What I see on the saveStack2Raw_2byte function is :

long nwrite = fwrite(formatkey, 1, lenkey, fid);
nwrite = fwrite(&endianCodeMachine, 1, 1, fid);
nwrite=fwrite(&dcode, 2, 1, fid);
nwrite = fwrite(mysz, 2, 4, fid);

nwrite = fwrite(img, unitSize, totalUnit, fid);

So the sizes in the header are : 24, 1, 2, 2, 2, 2, 2. Total : 35.
For the loadRaw2Stack I read : 24, 1, 2, 4, 4, 4, 4 Total 43

On a post you mentionned 43 for the header also.

But I do this in python :

And I get :
Am I missing something ?

Then to read the sx values in the file, I suppose they are placed line after line, slice after slice. So that for a  5 x 5 x 2 image, we have the following correspondences :

(0,0,0) -> 0
(1,0,0) -> 1
(2,0,0) -> 2
(0,1,0) -> 5
(0,0,1) -> 25
(4,4,1) -> 49

Is it right ?

Thank you
Best Regards


Thomas