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Jan 26, 2012 10:01 PM | Yaroslav Halchenko
dilate into the void
I wonder if any tool is already capable to dilate a volume carrying
atlas labels, where unmarked voxels within X mm receive label
matching the label of the nearest "non-void" voxel?
my motivation: some volumes were skull stripped tiny bit too aggressively by FSL's bet on highres anatomical -- as a result some border voxels after nearestneighbor reslicing of the sri24 atlas into the BOLD space lack labeling. Obvious somewhat non-scientific approach I thought of is to dilate label map but so that labels information propagates to the closest unoccupied voxels if multiple labels start to compete.
P.S. meanwhile I will just research on better parameters for bet to make it less aggressive ;-)
my motivation: some volumes were skull stripped tiny bit too aggressively by FSL's bet on highres anatomical -- as a result some border voxels after nearestneighbor reslicing of the sri24 atlas into the BOLD space lack labeling. Obvious somewhat non-scientific approach I thought of is to dilate label map but so that labels information propagates to the closest unoccupied voxels if multiple labels start to compete.
P.S. meanwhile I will just research on better parameters for bet to make it less aggressive ;-)
Threaded View
| Title | Author | Date |
|---|---|---|
| Yaroslav Halchenko | Jan 26, 2012 | |
| Torsten Rohlfing | Jan 26, 2012 | |
| Yaroslav Halchenko | Jan 26, 2012 | |
