Computational Morphometry Toolkit (CMTK)

A software toolkit for computational morphometry of biomedical images, CMTK comprises a set of command line tools and a back-end general-purpose library for processing and I/O.

The command line tools primarily provide the following functionality: registration (affine and nonrigid; single and multi-channel; pairwise and groupwise), image correction (MR bias field estimation; interleaved image artifact correction; EPI unwarping), processing (filters; combination of segmentations via voting and STAPLE; shape-based averaging), statistics (t-tests; general linear model).

CMTK is implemented in C++ with parallel processing using POSIX Threads (SMP), OpenMP (SMP), Grand Central Dispatch (SMP), and CUDA (GPU).

Supported file formats include Analyze (r/w), NIFTI (r/w), Nrrd (r/w), DICOM (read), BioRad (read). Data exchange with other toolkits, such as ITK, FSL, AFNI, SPM, etc. is thus easily accomplished.
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Specifications

Category:Algorithm or Reusable Library, Atlas Application, Format Conversion, Image Reconstruction, Anatomic, Artifact Removal, Image-to-Image, Resampling, Warping, Principal Component Analysis, Linear, Two Dimensional Display, Workflow
License:GNU General Public License (GPL)
Development Status:5 - Production/Stable/Mature
Domain:Domain Independent, MR
Environment:Console (Text Based), Win32 (MS Windows), X11 Applications
Intended Audience:Developers, End Users
Natural Language:English
Operating System:MacOS, Windows, Other OS, Cygwin, Linux, SunOS/Solaris
Programming Language:C, C++, sh/bash
Supported Data Format:ANALYZE, DICOM, NIfTI-1, Nrrd, Other Format

Associations

is part of:NeuroDebian

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RE: Compilation with CUDA support posted by Torsten Rohlfing on Aug 31

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Compilation with CUDA support posted by Vilim Stih on Aug 30

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RE: CMTK Registration GUI on Fiji posted by Sneha Mokashi on Jul 27

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CMTK Registration GUI on Fiji posted by Greg Jefferis on Jul 26

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CMTK Registration GUI on Fiji posted by Sneha Mokashi on Jul 26

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RE: CMTK on windows posted by Torsten Rohlfing on May 12

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RE: CMTK on windows posted by Greg Jefferis on May 11

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RE: Reformat script crashing posted by Torsten Rohlfing on May 11

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Reformat script crashing posted by Greg Jefferis on May 10

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Reformat script crashing posted by Gabriella Sterne on May 10