Computational Morphometry Toolkit (CMTK)

A software toolkit for computational morphometry of biomedical images, CMTK comprises a set of command line tools and a back-end general-purpose library for processing and I/O.

The command line tools primarily provide the following functionality: registration (affine and nonrigid; single and multi-channel; pairwise and groupwise), image correction (MR bias field estimation; interleaved image artifact correction; EPI unwarping), processing (filters; combination of segmentations via voting and STAPLE; shape-based averaging), statistics (t-tests; general linear model).

CMTK is implemented in C++ with parallel processing using POSIX Threads (SMP), OpenMP (SMP), Grand Central Dispatch (SMP), and CUDA (GPU).

Supported file formats include Analyze (r/w), NIFTI (r/w), Nrrd (r/w), DICOM (read), BioRad (read). Data exchange with other toolkits, such as ITK, FSL, AFNI, SPM, etc. is thus easily accomplished.
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Specifications

Category:Algorithm or Reusable Library, Atlas Application, Format Conversion, Image Reconstruction, Anatomic, Artifact Removal, Image-to-Image, Resampling, Warping, Principal Component Analysis, Linear, Two Dimensional Display, Workflow
License:GNU General Public License (GPL)
Development Status:6 - Mature
Domain:Domain Independent, MR
Environment:Console (Text Based), Win32 (MS Windows), X11 Applications
Intended Audience:Developers, End Users
Natural Language:English
Operating System:MacOS, Windows, Other OS, Cygwin, Linux, SunOS/Solaris
Programming Language:C, C++, sh/bash
Supported Data Format:ANALYZE, DICOM, NIfTI-1, Nrrd, Other Format

Associations

is part of:NeuroDebian

Recent Activity

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RE: CMTK Registration on Mac OS 10.1 posted by Greg Jefferis on Apr 16

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users forum

RE: CMTK Registration on Mac OS 10.1 posted by Greg Jefferis on Apr 15

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users forum

RE: CMTK Registration on Mac OS 10.1 posted by Yasuko Isoe on Apr 15

Forum Activity

users forum

RE: CMTK Registration on Mac OS 10.1 posted by Yasuko Isoe on Apr 15

Forum Activity

users forum

RE: CMTK Registration on Mac OS 10.1 posted by Greg Jefferis on Apr 15

Forum Activity

users forum

RE: CMTK Registration on Mac OS 10.1 posted by Yasuko Isoe on Apr 15

Forum Activity

users forum

RE: CMTK Registration on Mac OS 10.1 posted by Greg Jefferis on Apr 14

Forum Activity

users forum

CMTK Registration on Mac OS 10.1 posted by Yasuko Isoe on Apr 14

File Activity

cmtk: 3.2.3 release

CMTK-3.2.3-MacOSX-10.6-x86_64.tar.gz posted by Torsten Rohlfing on Feb 5

File Activity

cmtk: 3.2.3 release

CMTK-3.2.3-MacOSX-10.6-MacPorts-x86_64.tar.gz posted by Torsten Rohlfing on Feb 5