AutoSeg

AutoSeg is a novel C++ based application developped at UNC-Chapel Hill that performs automatic brain tissue classification and structural segmentation.

AutoSeg is designed for use with human and non-human primate pediatric, adolescent and adult data.

AutoSeg uses a BatchMake pipeline script that includes the main steps of the framework entailing N4 bias field correction, rigid registration to a common coordinate image, tissue segmentation, skull-stripping, intensity rescaling, atlas-based registration, subcortical segmentation and lobar parcellation, regional cortical thickness and intensity statistics. AutoSeg allows efficient batch processing and grid computing to process large datasets and provides quality control visualizations via Slicer3 MRML scenes.
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Specifications

Category:Expectation Minimization, Labeling, Volumetric Analysis, Image-to-Image, Image-to-Template, Spline Interpolation, Nonlinear Warp, Workflow
License:Apache License 2.0
Development Status:6 - Mature
Domain:MR
Environment:Win32 (MS Windows), X11 Applications
Intended Audience:Developers, End Users
Natural Language:English
Operating System:MacOS, Windows, Linux
Programming Language:C++
Supported Data Format:ANALYZE, Nrrd, Other Format

Recent Activity

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Forum Activity

help forum

RE: Slicer4 / Ubuntu 15.04 posted by Francois Budin 13 hours ago

Forum Activity

help forum

RE: itkEMS no longer supported posted by Francois Budin 13 hours ago

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help forum

itkEMS no longer supported posted by Andi B on May 20

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help forum

Slicer4 / Ubuntu 15.04 posted by Andi B on May 20

File Activity

autoseg: AutoSeg 3.0.1 release

AutoSeg_3.0.1.zip posted by Martin Styner on Sep 12, 2014

Document Activity

Main Folder documentation

Sample Computation and Parameters files posted by Jiahui Wang on Dec 28, 2013

Document Activity

Main Folder documentation

Sample Segmentation Results  posted by Jiahui Wang on Oct 31, 2013

File Activity

autoseg: AutoSeg_2.9 release

AutoSeg_2.9_linux64.zip posted by Clement Vachet on Jul 5, 2012

Forum Activity

help forum

Building AutoSeg 2.8 fails posted by Antonios Thanellas on Jun 7, 2012

File Activity

autoseg: AutoSeg_2.8 release

AutoSeg_2.8_linux64.zip posted by Clement Vachet on May 24, 2012