AutoSeg

AutoSeg is a novel C++ based application developped at UNC-Chapel Hill that performs automatic brain tissue classification and structural segmentation.

AutoSeg is designed for use with human and non-human primate pediatric, adolescent and adult data.

AutoSeg uses a BatchMake pipeline script that includes the main steps of the framework entailing N4 bias field correction, rigid registration to a common coordinate image, tissue segmentation, skull-stripping, intensity rescaling, atlas-based registration, subcortical segmentation and lobar parcellation, regional cortical thickness and intensity statistics. AutoSeg allows efficient batch processing and grid computing to process large datasets and provides quality control visualizations via Slicer3 MRML scenes.
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Specifications

Category:Expectation Minimization, Labeling, Volumetric Analysis, Image-to-Image, Image-to-Template, Spline Interpolation, Nonlinear Warp, Workflow
License:Apache License 2.0
Development Status:5 - Production/Stable/Mature
Domain:MR
Environment:Win32 (MS Windows), X11 Applications
Intended Audience:Developers, End Users
Natural Language:English
Operating System:MacOS, Windows, Linux
Programming Language:C++
Supported Data Format:ANALYZE, Nrrd, Other Format

Recent Activity

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Forum Activity

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RE: Autoseg running problem! posted by lei shi on Jan 22

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RE: Autoseg running problem! posted by Martin Styner on Jan 21

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help forum

Autoseg running problem! posted by lei shi on Jan 20

File Activity

autoseg: AutoSeg_3.3.2_linux64 release

AutoSeg_3.3.2_Linux64.tar.gz posted by Francois Budin on Jul 10, 2015

File Activity

autoseg: AutoSeg_3.3.1_MacOS release

AutoSeg_3.3.1_MacOS.tar.gz posted by Francois Budin on Jun 18, 2015

File Activity

autoseg: AutoSeg_3.3.1_linux64 release

AutoSeg_3.3.1_linux64.tar.gz posted by Francois Budin on Jun 18, 2015

File Activity

autoseg: AutoSeg_3.3.0_MacOS release

AutoSeg_3.3.0_MacOS.tar.gz posted by Francois Budin on Jun 9, 2015

File Activity

autoseg: AutoSeg_3.2.1_linux64 release

AutoSeg_3.2.1_linux64.tar.gz posted by Francois Budin on Jun 4, 2015

File Activity

autoseg: AutoSeg_3.2.1_MacOS release

AutoSeg_3.2.1_MacOS.tar.gz posted by Francois Budin on Jun 4, 2015

Forum Activity

help forum

RE: Slicer4 / Ubuntu 15.04 posted by Francois Budin on Jun 1, 2015