AutoSeg

AutoSeg is a novel C++ based application developped at UNC-Chapel Hill that performs automatic brain tissue classification and structural segmentation.

AutoSeg is designed for use with human and non-human primate pediatric, adolescent and adult data.

AutoSeg uses a BatchMake pipeline script that includes the main steps of the framework entailing N4 bias field correction, rigid registration to a common coordinate image, tissue segmentation, skull-stripping, intensity rescaling, atlas-based registration, subcortical segmentation and lobar parcellation, regional cortical thickness and intensity statistics. AutoSeg allows efficient batch processing and grid computing to process large datasets and provides quality control visualizations via Slicer3 MRML scenes.
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Specifications

Category:Expectation Minimization, Labeling, Volumetric Analysis, Image-to-Image, Image-to-Template, Spline Interpolation, Nonlinear Warp, Workflow
License:Apache License 2.0
Development Status:6 - Mature
Domain:MR
Environment:Win32 (MS Windows), X11 Applications
Intended Audience:Developers, End Users
Natural Language:English
Operating System:MacOS, Windows, Linux
Programming Language:C++
Supported Data Format:ANALYZE, Nrrd, Other Format

Recent Activity

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File Activity

autoseg: AutoSeg_3.3.2_linux64 release

AutoSeg_3.3.2_Linux64.tar.gz posted by Francois Budin on Jul 10

File Activity

autoseg: AutoSeg_3.3.1_MacOS release

AutoSeg_3.3.1_MacOS.tar.gz posted by Francois Budin on Jun 18

File Activity

autoseg: AutoSeg_3.3.1_linux64 release

AutoSeg_3.3.1_linux64.tar.gz posted by Francois Budin on Jun 18

File Activity

autoseg: AutoSeg_3.3.0_MacOS release

AutoSeg_3.3.0_MacOS.tar.gz posted by Francois Budin on Jun 9

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autoseg: AutoSeg_3.2.1_linux64 release

AutoSeg_3.2.1_linux64.tar.gz posted by Francois Budin on Jun 4

File Activity

autoseg: AutoSeg_3.2.1_MacOS release

AutoSeg_3.2.1_MacOS.tar.gz posted by Francois Budin on Jun 4

Forum Activity

help forum

RE: Slicer4 / Ubuntu 15.04 posted by Francois Budin on Jun 1

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RE: itkEMS no longer supported posted by Francois Budin on Jun 1

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help forum

RE: Slicer4 / Ubuntu 15.04 posted by Francois Budin on May 22

Forum Activity

help forum

RE: itkEMS no longer supported posted by Francois Budin on May 22