masked ICA (mICA) Toolbox

mICA Toolbox is a user-friendly toolbox to perform masked independent component analysis, i.e. ICA within a spatially restricted subregion of the brain. It is based on command line tools from FSL suite to perform the ICA and related analyses (e.g. specific data preprocessing, atlas-based mask generation, mICA-based parcellation, dual-regression and direct back reconstruction). Various options provide flexible control of the analysis.

mICA Toolbox is a helpful utility for researchers in the field of neuroimaging. It facillitates the study of intrinsic connectivity of brain (sub-)regions and the reconstruction of their extrinsic connectivity (i.e. connectivity with regions outside of the mask).

The toolbox furthermore offers an easy way to calculate ICA reproducibility over a range of decomposition dimensions, which can be used to overcome the common problem of dimensionality estimation.
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Specifications

Category:Independent Component Analysis
License:GNU General Public License (GPL)
Development Status:5 - Production/Stable/Mature
Domain:Computational Neuroscience, MR
Intended Audience:End Users
Natural Language:English
Operating System:MacOS, Linux
Programming Language:Python, Tcl/Tk
Supported Data Format:NIfTI-1

Associations

execution requires:FSL

Recent Activity

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Forum Activity

open-discussion forum

RE: Guide for Command Line Use of mICA posted by Jorge Manuel Sánchez on Jul 26

Forum Activity

open-discussion forum

RE: About mICA can not choose mask posted by Florian Beissner on Jul 26

Forum Activity

open-discussion forum

RE: About mICA can not choose mask posted by Jorge Manuel Sánchez on Jul 25

Forum Activity

open-discussion forum

About mICA can not choose mask posted by liu lin on Jul 23

File Activity

mICA: V 1.16 release

mICA_Toolbox_v1.16.tar.gz posted by Jorge Manuel Sánchez on Jun 15

File Activity

mICA: V 1.15 release

mICA_Toolbox_v1.15.tar.gz posted by Tawfik Moher Alsady on May 19

Forum Activity

open-discussion forum

Manually Modifying Default Grid Queues posted by Shady El Damaty on May 7

Forum Activity

open-discussion forum

Guide for Command Line Use of mICA posted by Shady El Damaty on May 1

Forum Activity

open-discussion forum

reproducibility in v1.14 posted by Esther Blessing on Apr 5

File Activity

mICA: V 1.14 release

mICA_Toolbox_v1.14.tar.gz posted by Tawfik Moher Alsady on Nov 8, 2016