Spinal Cord Toolbox

The Spinal Cord Toolbox is a comprehensive and open-source library of analysis tools for multi-parametric MRI of the spinal cord. The toolbox includes a template and several atlases (white and gray matter, spinal tracts, spinal and vertebral levels, etc.), along with state-of-the-art methods to register any data to the template. It also includes useful scripts for data preprocessing: extraction of centerline, automatic segmentation, slice-wise motion correction, etc. Check this out!

Specifications

Category:Atlas Application, Segmentation, Workflow
License:MIT/X Consortium License
Development Status:5 - Production/Stable/Mature
Domain:MR
Environment:Console (Text Based)
Intended Audience:End Users
Natural Language:English
Operating System:MacOS, Linux
Programming Language:C++, Python, sh/bash
Supported Data Format:NIfTI-1
Other Keywords: atlas, dti, fmri, mri, spinalcord, spinal cord, spine, template, toolbox

Recent Activity

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New SCT release: 3.0.0 posted by NITRC ADMIN on Mar 16

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New release: 3.0.0 posted by NITRC ADMIN on Mar 15

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sct_segment_graymatter error posted by NITRC ADMIN on Aug 26, 2016

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registration of DTI to T1 or T2 posted by NITRC ADMIN on Aug 6, 2016

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Error when using sct_label_vertebrae: "The file tmp.curve2straight_rigid.txt does not exist. Exit program." posted by julien cohen-adad on Feb 2, 2016

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New release: 2.2 posted by julien cohen-adad on Jan 23, 2016

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New release: v2.1 posted by julien cohen-adad on Dec 1, 2015

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Job: Neuroimaging software engineer for open-source development in Montreal posted by julien cohen-adad on Nov 1, 2015

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Problem with pillow in sct_check_dependences posted by julien cohen-adad on Aug 24, 2015

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Spinal Cord MRI Workshop @ISMRM'15 in Toronto posted by julien cohen-adad on Jun 9, 2015