NITRC: CoCoMac Brain Connectivity Database: PubMed Mentions: Display Document

PubMed Mentions

The links below are to publications on PubMed referring to CoCoMac Brain Connectivity Database. This list is gathered weekly from PubMed automatically and was last updated on February 21, 2026.

Publication/References
The brain atlas concordance problem: quantitative comparison of anatomical parcellations. Description: Bohland, Jason W, et al. The brain atlas concordance problem: quantitative comparison of anatomical parcellations. ''PLoS One''. 2009 Sep 29; '''4''' (9):e7200
Optimal hierarchical modular topologies for producing limited sustained activation of neural networks. Description: Kaiser, Marcus, et al. Optimal hierarchical modular topologies for producing limited sustained activation of neural networks. ''Front Neuroinform''. 2010; '''4''': 8
Visualizing neuronal network connectivity with connectivity pattern tables. Description: Nordlie, Eilen, et al. Visualizing neuronal network connectivity with connectivity pattern tables. ''Front Neuroinform''. 2010; '''3''': 39
Metaanalytic connectivity modeling: delineating the functional connectivity of the human amygdala. Description: Robinson, Jennifer L, et al. Metaanalytic connectivity modeling: delineating the functional connectivity of the human amygdala. ''Hum Brain Mapp''. 2010 Feb; '''31''' (2):173-84
Exploring brain function from anatomical connectivity. Description: Zamora-Lopez, Gorka, et al. Exploring brain function from anatomical connectivity. ''Front Neurosci''. 2011; '''5''': 83
Weight consistency specifies regularities of macaque cortical networks. Description: Markov, N T, et al. Weight consistency specifies regularities of macaque cortical networks. ''Cereb Cortex''. 2011 Jun; '''21''' (6):1254-72
A hybrid human and machine resource curation pipeline for the Neuroscience Information Framework. Description: Bandrowski, A E, et al. A hybrid human and machine resource curation pipeline for the Neuroscience Information Framework. ''Database (Oxford)''. 2012; '''2012''': bas005
Combining collation and annotation efforts toward completion of the rat and mouse connectomes in BAMS. Description: Bota, Mihail, et al. Combining collation and annotation efforts toward completion of the rat and mouse connectomes in BAMS. ''Front Neuroinform''. 2012; '''6''': 2
Communication and wiring in the cortical connectome. Description: Budd, Julian M L, et al. Communication and wiring in the cortical connectome. ''Front Neuroanat''. 2012; '''6''': 42
Mapping the connectome: multi-level analysis of brain connectivity. Description: Leergaard, Trygve B, et al. Mapping the connectome: multi-level analysis of brain connectivity. ''Front Neuroinform''. 2012; '''6''': 14
Rich club organization of macaque cerebral cortex and its role in network communication. Description: Harriger, Logan, et al. Rich club organization of macaque cerebral cortex and its role in network communication. ''PLoS One''. 2012; '''7''' (9):e46497
Virk: an active learning-based system for bootstrapping knowledge base development in the neurosciences. Description: Ambert, Kyle H, et al. Virk: an active learning-based system for bootstrapping knowledge base development in the neurosciences. ''Front Neuroinform''. 2013; '''7''': 38
Interactions between the neuromodulatory systems and the amygdala: exploratory survey using the Allen Mouse Brain Atlas. Description: Zaldivar, Andrew, et al. Interactions between the neuromodulatory systems and the amygdala: exploratory survey using the Allen Mouse Brain Atlas. ''Brain Struct Funct''. 2013 Nov; '''218''' (6):1513-30
Primate comparative neuroscience using magnetic resonance imaging: promises and challenges. Description: Mars, Rogier B, et al. Primate comparative neuroscience using magnetic resonance imaging: promises and challenges. ''Front Neurosci''. 2014; '''8''': 298
Linking macroscale graph analytical organization to microscale neuroarchitectonics in the macaque connectome. Description: Scholtens, Lianne H, et al. Linking macroscale graph analytical organization to microscale neuroarchitectonics in the macaque connectome. ''J Neurosci''. 2014 Sep 3; '''34''' (36):12192-205
BAMS2 workspace: a comprehensive and versatile neuroinformatic platform for collating and processing neuroanatomical connections. Description: Bota, Mihail, et al. BAMS2 workspace: a comprehensive and versatile neuroinformatic platform for collating and processing neuroanatomical connections. ''J Comp Neurol''. 2014 Oct 1; '''522''' (14):3160-76
A network convergence zone in the hippocampus. Description: Misic, Bratislav, et al. A network convergence zone in the hippocampus. ''PLoS Comput Biol''. 2014 Dec; '''10''' (12):e1003982
GRETNA: a graph theoretical network analysis toolbox for imaging connectomics. Description: Wang, Jinhui, et al. GRETNA: a graph theoretical network analysis toolbox for imaging connectomics. ''Front Hum Neurosci''. 2015; '''9''': 386
The Scalable Brain Atlas: Instant Web-Based Access to Public Brain Atlases and Related Content. Description: Bakker, Rembrandt, et al. The Scalable Brain Atlas: Instant Web-Based Access to Public Brain Atlases and Related Content. ''Neuroinformatics''. 2015 Jul; '''13''' (3):353-66
Comparison of diffusion tractography and tract-tracing measures of connectivity strength in rhesus macaque connectome. Description: van den Heuvel, Martijn P, et al. Comparison of diffusion tractography and tract-tracing measures of connectivity strength in rhesus macaque connectome. ''Hum Brain Mapp''. 2015 Aug; '''36''' (8):3064-75
Controllability of structural brain networks. Description: Gu, Shi, et al. Controllability of structural brain networks. ''Nat Commun''. 2015 Oct 1; '''6''': 8414
Building the Ferretome. Description: Sukhinin, Dmitrii I, et al. Building the Ferretome. ''Front Neuroinform''. 2016; '''10''': 16
Statistical Analysis of Tract-Tracing Experiments Demonstrates a Dense, Complex Cortical Network in the Mouse. Description: Ypma, Rolf J F, et al. Statistical Analysis of Tract-Tracing Experiments Demonstrates a Dense, Complex Cortical Network in the Mouse. ''PLoS Comput Biol''. 2016 Sep; '''12''' (9):e1005104
Functional complexity emerging from anatomical constraints in the brain: the significance of network modularity and rich-clubs. Description: Zamora-Lopez, Gorka, et al. Functional complexity emerging from anatomical constraints in the brain: the significance of network modularity and rich-clubs. ''Sci Rep''. 2016 Dec 5; '''6''': 38424
Predictive Model of Spread of Progressive Supranuclear Palsy Using Directional Network Diffusion. Description: Pandya, Sneha, et al. Predictive Model of Spread of Progressive Supranuclear Palsy Using Directional Network Diffusion. ''Front Neurol''. 2017; '''8''': 692
Features of spatial and functional segregation and integration of the primate connectome revealed by trade-off between wiring cost and efficiency. Description: Chen, Yuhan, et al. Features of spatial and functional segregation and integration of the primate connectome revealed by trade-off between wiring cost and efficiency. ''PLoS Comput Biol''. 2017 Sep; '''13''' (9):e1005776
Estimating the impact of structural directionality: How reliable are undirected connectomes? Description: Kale, Penelope, et al. Estimating the impact of structural directionality: How reliable are undirected connectomes? ''Netw Neurosci''. 2018; '''2''' (2):259-284
The hippocampal network model: A transdiagnostic metaconnectomic approach. Description: Kotkowski, Eithan, et al. The hippocampal network model: A transdiagnostic metaconnectomic approach. ''Neuroimage Clin''. 2018; '''18''': 115-129
The modulation of neural gain facilitates a transition between functional segregation and integration in the brain. Description: Shine, James M, et al. The modulation of neural gain facilitates a transition between functional segregation and integration in the brain. ''Elife''. 2018 Jan 29; '''7''':
Efficient communication dynamics on macro-connectome, and the propagation speed. Description: Shimono, Masanori, et al. Efficient communication dynamics on macro-connectome, and the propagation speed. ''Sci Rep''. 2018 Feb 6; '''8''' (1):2510
Multi-scale account of the network structure of macaque visual cortex. Description: Schmidt, Maximilian, et al. Multi-scale account of the network structure of macaque visual cortex. ''Brain Struct Funct''. 2018 Apr; '''223''' (3):1409-1435
Connectivity Fingerprints: From Areal Descriptions to Abstract Spaces. Description: Mars, Rogier B, et al. Connectivity Fingerprints: From Areal Descriptions to Abstract Spaces. ''Trends Cogn Sci''. 2018 Nov; '''22''' (11):1026-1037
Macro-connectomics and microstructure predict dynamic plasticity patterns in the non-human primate brain. Description: Froudist-Walsh, Sean, et al. Macro-connectomics and microstructure predict dynamic plasticity patterns in the non-human primate brain. ''Elife''. 2018 Nov 21; '''7''':
BOLD signal variability and complexity in children and adolescents with and without autism spectrum disorder. Description: Easson, Amanda K, et al. BOLD signal variability and complexity in children and adolescents with and without autism spectrum disorder. ''Dev Cogn Neurosci''. 2019 Apr; '''36''': 100630
A macaque connectome for large-scale network simulations in TheVirtualBrain. Description: Shen, Kelly, et al. A macaque connectome for large-scale network simulations in TheVirtualBrain. ''Sci Data''. 2019 Jul 17; '''6''' (1):123
Transitions in information processing dynamics at the whole-brain network level are driven by alterations in neural gain. Description: Li, Mike, et al. Transitions in information processing dynamics at the whole-brain network level are driven by alterations in neural gain. ''PLoS Comput Biol''. 2019 Oct; '''15''' (10):e1006957
Creative destruction: Sparse activity emerges on the mammal connectome under a simulated communication strategy with collisions and redundancy. Description: Hao, Yan, et al. Creative destruction: Sparse activity emerges on the mammal connectome under a simulated communication strategy with collisions and redundancy. ''Netw Neurosci''. 2020; '''4''' (4):1055-1071
Modeling the influence of the hippocampal memory system on the oculomotor system. Description: Ryan, Jennifer D, et al. Modeling the influence of the hippocampal memory system on the oculomotor system. ''Netw Neurosci''. 2020; '''4''' (1):217-233
A Large-Scale High-Density Weighted Structural Connectome of the Macaque Brain Acquired by Predicting Missing Links. Description: Chen, Yuhan, et al. A Large-Scale High-Density Weighted Structural Connectome of the Macaque Brain Acquired by Predicting Missing Links. ''Cereb Cortex''. 2020 Jul 30; '''30''' (9):4771-4789
Fine-Grained Topography and Modularity of the Macaque Frontal Pole Cortex Revealed by Anatomical Connectivity Profiles. Description: He, Bin, et al. Fine-Grained Topography and Modularity of the Macaque Frontal Pole Cortex Revealed by Anatomical Connectivity Profiles. ''Neurosci Bull''. 2020 Dec; '''36''' (12):1454-1473
Inferring network properties from time series using transfer entropy and mutual information: Validation of multivariate versus bivariate approaches. Description: Novelli, Leonardo, et al. Inferring network properties from time series using transfer entropy and mutual information: Validation of multivariate versus bivariate approaches. ''Netw Neurosci''. 2021; '''5''' (2):373-404
Meta-analytic connectivity modelling of deception-related brain regions. Description: Meier, Sarah K, et al. Meta-analytic connectivity modelling of deception-related brain regions. ''PLoS One''. 2021; '''16''' (8):e0248909
Hierarchical disruption in the cortex of anesthetized monkeys as a new signature of consciousness loss. Description: Signorelli, Camilo Miguel, et al. Hierarchical disruption in the cortex of anesthetized monkeys as a new signature of consciousness loss. ''Neuroimage''. 2021 Feb 15; '''227''': 117618
Organization of areal connectivity in the monkey frontoparietal network. Description: Conklin, Bryan D, et al. Organization of areal connectivity in the monkey frontoparietal network. ''Neuroimage''. 2021 Nov 1; '''241''': 118414
Deep brain stimulation of the thalamus restores signatures of consciousness in a nonhuman primate model. Description: Tasserie, Jordy, et al. Deep brain stimulation of the thalamus restores signatures of consciousness in a nonhuman primate model. ''Sci Adv''. 2022 Mar 18; '''8''' (11):eabl5547
Evolutionary shaping of human brain dynamics. Description: Pang, James C, et al. Evolutionary shaping of human brain dynamics. ''Elife''. 2022 Oct 26; '''11''':
Assortative mixing in micro-architecturally annotated brain connectomes. Description: Bazinet, Vincent, et al. Assortative mixing in micro-architecturally annotated brain connectomes. ''Nat Commun''. 2023 May 18; '''14''' (1):2850
Robust estimation of cortical similarity networks from brain MRI. Description: Sebenius, Isaac, et al. Robust estimation of cortical similarity networks from brain MRI. ''Nat Neurosci''. 2023 Aug; '''26''' (8):1461-1471
Brainwide mesoscale functional networks revealed by focal infrared neural stimulation of the amygdala. Description: Ping, An, et al. Brainwide mesoscale functional networks revealed by focal infrared neural stimulation of the amygdala. ''bioRxiv''. 2024 Feb 19;
Multi-scale spiking network model of human cerebral cortex. Description: Pronold, Jari, et al. Multi-scale spiking network model of human cerebral cortex. ''Cereb Cortex''. 2024 Oct 3; '''34''' (10):
Deep learning models reveal the link between dynamic brain connectivity patterns and states of consciousness. Description: Gomez, Chloe, et al. Deep learning models reveal the link between dynamic brain connectivity patterns and states of consciousness. ''Sci Rep''. 2024 Dec 30; '''14''' (1):31606
A simulated annealing algorithm for randomizing weighted networks. Description: Milisav, Filip, et al. A simulated annealing algorithm for randomizing weighted networks. ''Nat Comput Sci''. 2025 Jan; '''5''' (1):48-64
Benchmarking macaque brain gene expression for horizontal and vertical translation. Description: Luppi, Andrea I, et al. Benchmarking macaque brain gene expression for horizontal and vertical translation. ''Sci Adv''. 2025 Feb 28; '''11''' (9):eads6967
Transcranial direct current stimulation modulates primate brain dynamics across states of consciousness. Description: Hoffner, Guylaine, et al. Transcranial direct current stimulation modulates primate brain dynamics across states of consciousness. ''Elife''. 2025 Oct 13; '''13''':
Intrinsic ion dynamics underlies the temporal nature of resting-state functional connectivity. Description: Gonzalez, Oscar C, et al. Intrinsic ion dynamics underlies the temporal nature of resting-state functional connectivity. ''bioRxiv''. 2025 Nov 9;