The links below are to publications on PubMed referring to GAMBIT. This list is gathered weekly from PubMed automatically.

Publication/References
Three-dimensional fluorescence-enhanced optical tomography using a hand-held probe based imaging system.
Description: Ge, Jiajia, et al. Three-dimensional fluorescence-enhanced optical tomography using a hand-held probe based imaging system. ''Med Phys''. 2008 Jul; '''35''' (7):3354-63
Synergy of image analysis for animal and human neuroimaging supports translational research on drug abuse.
Description: Gerig, Guido, et al. Synergy of image analysis for animal and human neuroimaging supports translational research on drug abuse. ''Front Psychiatry''. 2011; '''2''': 53
Computer-Aided Patient-Specific Coronary Artery Graft Design Improvements Using CFD Coupled Shape Optimizer.
Description: Dur, Onur, et al. Computer-Aided Patient-Specific Coronary Artery Graft Design Improvements Using CFD Coupled Shape Optimizer. ''Cardiovasc Eng Technol''. 2011 Mar; '''2''' (1):35-47
Elevated uptake of plasma macromolecules by regions of arterial wall predisposed to plaque instability in a mouse model.
Description: Mohri, Zahra, et al. Elevated uptake of plasma macromolecules by regions of arterial wall predisposed to plaque instability in a mouse model. ''PLoS One''. 2014; '''9''' (12):e115728
Computational Fluid Dynamics Study of Bifurcation Aneurysms Treated with Pipeline Embolization Device: Side Branch Diameter Study.
Description: Tang, Abraham Yik-Sau, et al. Computational Fluid Dynamics Study of Bifurcation Aneurysms Treated with Pipeline Embolization Device: Side Branch Diameter Study. ''J Med Biol Eng''. 2015; '''35''' (3):293-304
Coronary computed tomography angiography based assessment of endothelial shear stress and its association with atherosclerotic plaque distribution in-vivo.
Description: Hetterich, Holger, et al. Coronary computed tomography angiography based assessment of endothelial shear stress and its association with atherosclerotic plaque distribution in-vivo. ''PLoS One''. 2015; '''10''' (1):e0115408
Numerical simulation on the effects of drug eluting stents at different Reynolds numbers on hemodynamic and drug concentration distribution.
Description: Chen, Yu, et al. Numerical simulation on the effects of drug eluting stents at different Reynolds numbers on hemodynamic and drug concentration distribution. ''Biomed Eng Online''. 2015; '''14 Suppl 1''': S16
Blood flow in intracranial aneurysms treated with Pipeline embolization devices: computational simulation and verification with Doppler ultrasonography on phantom models.
Description: Tsang, Anderson Chun On, et al. Blood flow in intracranial aneurysms treated with Pipeline embolization devices: computational simulation and verification with Doppler ultrasonography on phantom models. ''Ultrasonography''. 2015 Apr; '''34''' (2):98-108
Shear stress-induced atherosclerotic plaque composition in ApoE(-/-) mice is modulated by connexin37.
Description: Pfenniger, A, et al. Shear stress-induced atherosclerotic plaque composition in ApoE(-/-) mice is modulated by connexin37. ''Atherosclerosis''. 2015 Nov; '''243''' (1):1-10
A Novel Attempt to Standardize Results of CFD Simulations Basing on Spatial Configuration of Aortic Stent-Grafts.
Description: Polanczyk, Andrzej, et al. A Novel Attempt to Standardize Results of CFD Simulations Basing on Spatial Configuration of Aortic Stent-Grafts. ''PLoS One''. 2016; '''11''' (4):e0153332
Wall shear stress in portal vein of cirrhotic patients with portal hypertension.
Description: Wei, Wei, et al. Wall shear stress in portal vein of cirrhotic patients with portal hypertension. ''World J Gastroenterol''. 2017 May 14; '''23''' (18):3279-3286
Model-Based Therapy Planning Allows Prediction of Haemodynamic Outcome after Aortic Valve Replacement.
Description: Kelm, M, et al. Model-Based Therapy Planning Allows Prediction of Haemodynamic Outcome after Aortic Valve Replacement. ''Sci Rep''. 2017 Aug 29; '''7''' (1):9897
A perfusion incubator liver chip for 3D cell culture with application on chronic hepatotoxicity testing.
Description: Yu, Fang, et al. A perfusion incubator liver chip for 3D cell culture with application on chronic hepatotoxicity testing. ''Sci Rep''. 2017 Nov 6; '''7''' (1):14528
Clinical value of homodynamic numerical simulation applied in the treatment of cerebral aneurysm.
Description: Zhang, Hailin, et al. Clinical value of homodynamic numerical simulation applied in the treatment of cerebral aneurysm. ''Exp Ther Med''. 2017 Dec; '''14''' (6):5401-5404
Effect of delayed pMDI actuation on the lung deposition of a fixed-dose combination aerosol drug.
Description: Farkas, Arpad, et al. Effect of delayed pMDI actuation on the lung deposition of a fixed-dose combination aerosol drug. ''Int J Pharm''. 2018 Aug 25; '''547''' (1-2):480-488
Numerical Study of Double-Layered Microchannel Heat Sinks with Different Cross-Sectional Shapes.
Description: Deng, Daxiang, et al. Numerical Study of Double-Layered Microchannel Heat Sinks with Different Cross-Sectional Shapes. ''Entropy (Basel)''. 2018 Dec 25; '''21''' (1):
Interpreting Coronary Artery Disease Risk Through Gene-Environment Interactions in Gene Regulation.
Description: Findley, Anthony S, et al. Interpreting Coronary Artery Disease Risk Through Gene-Environment Interactions in Gene Regulation. ''Genetics''. 2019 Oct; '''213''' (2):651-663
Development of a Concussion Risk Function for a Youth Population Using Head Linear and Rotational Acceleration.
Description: Campolettano, Eamon T, et al. Development of a Concussion Risk Function for a Youth Population Using Head Linear and Rotational Acceleration. ''Ann Biomed Eng''. 2020 Jan; '''48''' (1):92-103
Microfluidic Biofabrication of 3D Multicellular Spheroids by Modulation of Non-geometrical Parameters.
Description: Lopa, Silvia, et al. Microfluidic Biofabrication of 3D Multicellular Spheroids by Modulation of Non-geometrical Parameters. ''Front Bioeng Biotechnol''. 2020; '''8''': 366
Numerical Analysis of Airway Mucus Clearance Effectiveness Using Assisted Coughing Techniques.
Description: Ren, Shuai, et al. Numerical Analysis of Airway Mucus Clearance Effectiveness Using Assisted Coughing Techniques. ''Sci Rep''. 2020 Feb 6; '''10''' (1):2030
The Formation Mechanism of the Double Gas Layer in Gas-Assisted Extrusion and Its Influence on Plastic Micro-Tube Formation.
Description: Liu, Tongke, et al. The Formation Mechanism of the Double Gas Layer in Gas-Assisted Extrusion and Its Influence on Plastic Micro-Tube Formation. ''Polymers (Basel)''. 2020 Feb 6; '''12''' (2):
Printability of External and Internal Structures Based on Digital Light Processing 3D Printing Technique.
Description: Yang, Yan, et al. Printability of External and Internal Structures Based on Digital Light Processing 3D Printing Technique. ''Pharmaceutics''. 2020 Feb 28; '''12''' (3):
Development and validation of the first consensus gene-expression signature of operational tolerance in kidney transplantation, incorporating adjustment for immunosuppressive drug therapy.
Description: Christakoudi, Sofia, et al. Development and validation of the first consensus gene-expression signature of operational tolerance in kidney transplantation, incorporating adjustment for immunosuppressive drug therapy. ''EBioMedicine''. 2020 Aug; '''58''': 102899
PTWAS: investigating tissue-relevant causal molecular mechanisms of complex traits using probabilistic TWAS analysis.
Description: Zhang, Yuhua, et al. PTWAS: investigating tissue-relevant causal molecular mechanisms of complex traits using probabilistic TWAS analysis. ''Genome Biol''. 2020 Sep 11; '''21''' (1):232
Investigations of Liquid Steel Viscosity and Its Impact as the Initial Parameter on Modeling of the Steel Flow through the Tundish.
Description: Slezak, Marta, et al. Investigations of Liquid Steel Viscosity and Its Impact as the Initial Parameter on Modeling of the Steel Flow through the Tundish. ''Materials (Basel)''. 2020 Nov 7; '''13''' (21):
Integrating comprehensive functional annotations to boost power and accuracy in gene-based association analysis.
Description: Quick, Corbin, et al. Integrating comprehensive functional annotations to boost power and accuracy in gene-based association analysis. ''PLoS Genet''. 2020 Dec; '''16''' (12):e1009060
An Overview of the Effectiveness of Bicycle Helmet Designs in Impact Testing.
Description: Abderezaei, Javid, et al. An Overview of the Effectiveness of Bicycle Helmet Designs in Impact Testing. ''Front Bioeng Biotechnol''. 2021; '''9''': 718407
Defining a Methylation Signature Associated With Operational Tolerance in Kidney Transplant Recipients.
Description: Rodriguez, Ramon M, et al. Defining a Methylation Signature Associated With Operational Tolerance in Kidney Transplant Recipients. ''Front Immunol''. 2021; '''12''': 709164
Evaluation of Head Injury Criteria for Injury Prediction Effectiveness: Computational Reconstruction of Real-World Vulnerable Road User Impact Accidents.
Description: Wang, Fang, et al. Evaluation of Head Injury Criteria for Injury Prediction Effectiveness: Computational Reconstruction of Real-World Vulnerable Road User Impact Accidents. ''Front Bioeng Biotechnol''. 2021; '''9''': 677982
Function of arteries and veins in conditions of simulated cardiac arrest.
Description: Kamali Shahri, Seyed Mehdi, et al. Function of arteries and veins in conditions of simulated cardiac arrest. ''Bioimpacts''. 2021; '''11''' (2):157-164
To compare the continuous and intermittent irrigation method on the removal of dentin debris from root canals and to evaluate the dynamics of irrigant flow using computational fluid dynamics.
Description: Raj, Shalya, et al. To compare the continuous and intermittent irrigation method on the removal of dentin debris from root canals and to evaluate the dynamics of irrigant flow using computational fluid dynamics. ''J Conserv Dent''. 2021 Jan-Feb; '''24''' (1):94-99
Fibre-Reinforced Geopolymer Concretes for Sensible Heat Thermal Energy Storage: Simulations and Environmental Impact.
Description: Frattini, Domenico, et al. Fibre-Reinforced Geopolymer Concretes for Sensible Heat Thermal Energy Storage: Simulations and Environmental Impact. ''Materials (Basel)''. 2021 Jan 15; '''14''' (2):
Chitosan/tripolyphosphate nanoparticles in active and passive microchannels.
Description: Akbari, Mona, et al. Chitosan/tripolyphosphate nanoparticles in active and passive microchannels. ''Res Pharm Sci''. 2021 Feb; '''16''' (1):79-93
Experimental tracking and numerical mapping of novel coronavirus micro-droplet deposition through nasal inhalation in the human respiratory system.
Description: Mortazavy Beni, Hamidreza, et al. Experimental tracking and numerical mapping of novel coronavirus micro-droplet deposition through nasal inhalation in the human respiratory system. ''Biomech Model Mechanobiol''. 2021 Mar 1;
Strategies and mechanisms to improve the printability of pharmaceutical polymers Eudragit(R) EPO and Soluplus(R).
Description: Yang, Yan, et al. Strategies and mechanisms to improve the printability of pharmaceutical polymers Eudragit(R) EPO and Soluplus(R). ''Int J Pharm''. 2021 Apr 15; '''599''': 120410
Water as a Blood Model for Determination of CO2 Removal Performance of Membrane Oxygenators.
Description: Lukitsch, Benjamin, et al. Water as a Blood Model for Determination of CO2 Removal Performance of Membrane Oxygenators. ''Membranes (Basel)''. 2021 May 12; '''11''' (5):
Analysis and Prediction of Methane Invasion Distance Considering Real Ground Boundary.
Description: Bu, Fanxi, et al. Analysis and Prediction of Methane Invasion Distance Considering Real Ground Boundary. ''ACS Omega''. 2021 Nov 2; '''6''' (43):29111-29125
Airflow, Fiber Dynamic Whipping, and Final Fiber Diameter in Flush Sharp-Die Melt Blowing with Different Air-Slot Widths.
Description: Jia, Jingjing, et al. Airflow, Fiber Dynamic Whipping, and Final Fiber Diameter in Flush Sharp-Die Melt Blowing with Different Air-Slot Widths. ''ACS Omega''. 2021 Nov 9; '''6''' (44):30012-30018
Study on flow distribution pattern and conductivity of porous media in bioretention cells.
Description: Wang, Yajun, et al. Study on flow distribution pattern and conductivity of porous media in bioretention cells. ''Bioengineered''. 2021 Dec; '''12''' (2):12740-12754
Kinetic control of Phytic acid/Lixisenatide/Fe (III) ternary nanoparticles assembly process for sustained peptide release.
Description: Wang, Yanan, et al. Kinetic control of Phytic acid/Lixisenatide/Fe (III) ternary nanoparticles assembly process for sustained peptide release. ''Int J Pharm''. 2022 Jan 5; '''611''': 121317
Mn12 -Acetate Complexes Studied as Single Molecules.
Description: Tombers, Matthias, et al. Mn12 -Acetate Complexes Studied as Single Molecules. ''Chemistry''. 2022 Jan 10; '''28''' (2):e202102592
Temperature and salinity preferences of endangered Delta Smelt (Hypomesus transpacificus, Actinopterygii, Osmeridae).
Description: Hung, Tien-Chieh, et al. Temperature and salinity preferences of endangered Delta Smelt (Hypomesus transpacificus, Actinopterygii, Osmeridae). ''Sci Rep''. 2022 Oct 3; '''12''' (1):16558
Forecasts for the concentration of petroleum gas leakage diffusion under different liquid level heights of a sealing ring of sizeable floating roof tank.
Description: Wei, Yonghui, et al. Forecasts for the concentration of petroleum gas leakage diffusion under different liquid level heights of a sealing ring of sizeable floating roof tank. ''Sci Rep''. 2022 Nov 9; '''12''' (1):19124
Accelerated sequences of 4D flow MRI using GRAPPA and compressed sensing: A comparison against conventional MRI and computational fluid dynamics.
Description: Garreau, Morgane, et al. Accelerated sequences of 4D flow MRI using GRAPPA and compressed sensing: A comparison against conventional MRI and computational fluid dynamics. ''Magn Reson Med''. 2022 Dec; '''88''' (6):2432-2446
GAMBIT (Genomic Approximation Method for Bacterial Identification and Tracking): A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.
Description: Lumpe, Jared, et al. GAMBIT (Genomic Approximation Method for Bacterial Identification and Tracking): A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification. ''PLoS One''. 2023; '''18''' (2):e0277575
Effect of Electrode Induction Melting Gas Atomization on Powder Quality: Satellite Formation Mechanism and Pressure.
Description: Wu, Jialun, et al. Effect of Electrode Induction Melting Gas Atomization on Powder Quality: Satellite Formation Mechanism and Pressure. ''Materials (Basel)''. 2023 Mar 21; '''16''' (6):
Modeling pressure drop values across ultra-thin nanofiber filters with various ranges of filtration parameters under an aerodynamic slip effect.
Description: Lee, Songhui, et al. Modeling pressure drop values across ultra-thin nanofiber filters with various ranges of filtration parameters under an aerodynamic slip effect. ''Sci Rep''. 2023 Apr 3; '''13''' (1):5449
Aerodynamic performance of a ventilation system for droplet control by coughing in a hospital isolation ward.
Description: Song, Yunfei, et al. Aerodynamic performance of a ventilation system for droplet control by coughing in a hospital isolation ward. ''Environ Sci Pollut Res Int''. 2023 May 17; 1-13
To optimize gas flaring in Kirkuk refinery in various seasons via artificial intelligence techniques.
Description: Zoeir, A, et al. To optimize gas flaring in Kirkuk refinery in various seasons via artificial intelligence techniques. ''Sci Rep''. 2023 Aug 17; '''13''' (1):13406
Non-Isothermal Simulation and Safety Analysis of Twin-Screw Extrusion Process for Synthetizing Glycidyl Azide Polymer-Based Energetic Thermoplastic Elastomer.
Description: Yuan, Junming, et al. Non-Isothermal Simulation and Safety Analysis of Twin-Screw Extrusion Process for Synthetizing Glycidyl Azide Polymer-Based Energetic Thermoplastic Elastomer. ''Polymers (Basel)''. 2023 Sep 5; '''15''' (18):
Comparative Study of Membrane Fouling with Aeration Shear Stress in Filtration of Different Substances.
Description: Yao, Weihao, et al. Comparative Study of Membrane Fouling with Aeration Shear Stress in Filtration of Different Substances. ''Membranes (Basel)''. 2023 Nov 1; '''13''' (11):