The links below are to publications on PubMed referring to Laboratory of Neuro Imaging (LONI). This list is gathered weekly from PubMed automatically and was last updated on February 14, 2026.

Publication/References
Multimodality data integration in epilepsy.
Description: Muzik, Otto, et al. Multimodality data integration in epilepsy. ''Int J Biomed Imaging''. 2007; '''2007''': 13963
Macroscopic brain architecture changes and white matter pathology in acromegaly: a clinicoradiological study.
Description: Sievers, C, et al. Macroscopic brain architecture changes and white matter pathology in acromegaly: a clinicoradiological study. ''Pituitary''. 2009; '''12''' (3):177-85
Baseline MRI predictors of conversion from MCI to probable AD in the ADNI cohort.
Description: Risacher, Shannon L, et al. Baseline MRI predictors of conversion from MCI to probable AD in the ADNI cohort. ''Curr Alzheimer Res''. 2009 Aug; '''6''' (4):347-61
A robust method to estimate the intracranial volume across MRI field strengths (1.5T and 3T).
Description: Keihaninejad, Shiva, et al. A robust method to estimate the intracranial volume across MRI field strengths (1.5T and 3T). ''Neuroimage''. 2010 May 1; '''50''' (4):1427-37
The construction of a Chinese MRI brain atlas: a morphometric comparison study between Chinese and Caucasian cohorts.
Description: Tang, Yuchun, et al. The construction of a Chinese MRI brain atlas: a morphometric comparison study between Chinese and Caucasian cohorts. ''Neuroimage''. 2010 May 15; '''51''' (1):33-41
An in vivo MRI Template Set for Morphometry, Tissue Segmentation, and fMRI Localization in Rats.
Description: Valdes-Hernandez, Pedro Antonio, et al. An in vivo MRI Template Set for Morphometry, Tissue Segmentation, and fMRI Localization in Rats. ''Front Neuroinform''. 2011; '''5''': 26
Specificity of esthetic experience for artworks: an FMRI study.
Description: Di Dio, Cinzia, et al. Specificity of esthetic experience for artworks: an FMRI study. ''Front Hum Neurosci''. 2011; '''5''': 139
Sparse learning and stability selection for predicting MCI to AD conversion using baseline ADNI data.
Description: Ye, Jieping, et al. Sparse learning and stability selection for predicting MCI to AD conversion using baseline ADNI data. ''BMC Neurol''. 2012 Jun 25; '''12''': 46
Association between an Alzheimer's Disease-Related Index and APOE epsilon4 Gene Dose.
Description: Schraml, Frank, et al. Association between an Alzheimer's Disease-Related Index and APOE epsilon4 Gene Dose. ''PLoS One''. 2013; '''8''' (6):e67163
Early indications of future cognitive decline: stable versus declining controls.
Description: Rizk-Jackson, Angela, et al. Early indications of future cognitive decline: stable versus declining controls. ''PLoS One''. 2013; '''8''' (9):e74062
The PSEN1, p.E318G variant increases the risk of Alzheimer's disease in APOE-epsilon4 carriers.
Description: Benitez, Bruno A, et al. The PSEN1, p.E318G variant increases the risk of Alzheimer's disease in APOE-epsilon4 carriers. ''PLoS Genet''. 2013; '''9''' (8):e1003685
Brain structures associated with executive functions during everyday events in a non-clinical sample.
Description: Takeuchi, Hikaru, et al. Brain structures associated with executive functions during everyday events in a non-clinical sample. ''Brain Struct Funct''. 2013 Jul; '''218''' (4):1017-32
Irritable bowel syndrome in female patients is associated with alterations in structural brain networks.
Description: Labus, Jennifer S, et al. Irritable bowel syndrome in female patients is associated with alterations in structural brain networks. ''Pain''. 2014 Jan; '''155''' (1):137-49
MR-less surface-based amyloid assessment based on 11C PiB PET.
Description: Zhou, Luping, et al. MR-less surface-based amyloid assessment based on 11C PiB PET. ''PLoS One''. 2014; '''9''' (1):e84777
The MAPP research network: design, patient characterization and operations.
Description: Landis, J Richard, et al. The MAPP research network: design, patient characterization and operations. ''BMC Urol''. 2014 Aug 1; '''14''': 58
Genome-wide association study of CSF levels of 59 alzheimer's disease candidate proteins: significant associations with proteins involved in amyloid processing and inflammation.
Description: Kauwe, John S K, et al. Genome-wide association study of CSF levels of 59 alzheimer's disease candidate proteins: significant associations with proteins involved in amyloid processing and inflammation. ''PLoS Genet''. 2014 Oct; '''10''' (10):e1004758
Lack of parvalbumin in mice leads to behavioral deficits relevant to all human autism core symptoms and related neural morphofunctional abnormalities.
Description: Wohr, M, et al. Lack of parvalbumin in mice leads to behavioral deficits relevant to all human autism core symptoms and related neural morphofunctional abnormalities. ''Transl Psychiatry''. 2015 Mar 10; '''5''': e525
Engineering the next generation of brain scientists.
Description: Litt, Brian. Engineering the next generation of brain scientists. ''Neuron''. 2015 Apr 8; '''86''' (1):16-20
Acceleration of hippocampal atrophy rates in asymptomatic amyloidosis.
Description: Andrews, K Abigail, et al. Acceleration of hippocampal atrophy rates in asymptomatic amyloidosis. ''Neurobiol Aging''. 2016 Mar; '''39''': 99-107
Automatic labeling of MR brain images by hierarchical learning of atlas forests.
Description: Zhang, Lichi, et al. Automatic labeling of MR brain images by hierarchical learning of atlas forests. ''Med Phys''. 2016 Mar; '''43''' (3):1175-86
Impact of videogame play on the brain's microstructural properties: cross-sectional and longitudinal analyses.
Description: Takeuchi, H, et al. Impact of videogame play on the brain's microstructural properties: cross-sectional and longitudinal analyses. ''Mol Psychiatry''. 2016 Dec; '''21''' (12):1781-1789
Cerebral Blood Flow and Amyloid-beta Interact to Affect Memory Performance in Cognitively Normal Older Adults.
Description: Bangen, Katherine J, et al. Cerebral Blood Flow and Amyloid-beta Interact to Affect Memory Performance in Cognitively Normal Older Adults. ''Front Aging Neurosci''. 2017; '''9''': 181
Hippocampal to basal forebrain transport of Mn(2+) is impaired by deletion of KLC1, a subunit of the conventional kinesin microtubule-based motor.
Description: Medina, Christopher S, et al. Hippocampal to basal forebrain transport of Mn(2+) is impaired by deletion of KLC1, a subunit of the conventional kinesin microtubule-based motor. ''Neuroimage''. 2017 Jan 15; '''145''' (Pt A):44-57
White matter hyperintensities are associated with disproportionate progressive hippocampal atrophy.
Description: Fiford, Cassidy M, et al. White matter hyperintensities are associated with disproportionate progressive hippocampal atrophy. ''Hippocampus''. 2017 Mar; '''27''' (3):249-262
Improved Diagnostic Accuracy of Alzheimer's Disease by Combining Regional Cortical Thickness and Default Mode Network Functional Connectivity: Validated in the Alzheimer's Disease Neuroimaging Initiative Set.
Description: Park, Ji Eun, et al. Improved Diagnostic Accuracy of Alzheimer's Disease by Combining Regional Cortical Thickness and Default Mode Network Functional Connectivity: Validated in the Alzheimer's Disease Neuroimaging Initiative Set. ''Korean J Radiol''. 2017 Nov-Dec; '''18''' (6):983-991
Comparison of Standardized Uptake Value Ratio Calculations in Amyloid Positron Emission Tomography Brain Imaging.
Description: Knesaurek, Karin, et al. Comparison of Standardized Uptake Value Ratio Calculations in Amyloid Positron Emission Tomography Brain Imaging. ''World J Nucl Med''. 2018 Jan-Mar; '''17''' (1):21-26
A Candidate Regulatory Variant at the TREM Gene Cluster Confer Alzheimer's Disease Risk by Modulating Both Amyloid-beta Pathology and Neuronal Degeneration.
Description: Tian, Mei-Ling, et al. A Candidate Regulatory Variant at the TREM Gene Cluster Confer Alzheimer's Disease Risk by Modulating Both Amyloid-beta Pathology and Neuronal Degeneration. ''Front Neurosci''. 2019; '''13''': 742
Early increase of CSF sTREM2 in Alzheimer's disease is associated with tau related-neurodegeneration but not with amyloid-beta pathology.
Description: Suarez-Calvet, Marc, et al. Early increase of CSF sTREM2 in Alzheimer's disease is associated with tau related-neurodegeneration but not with amyloid-beta pathology. ''Mol Neurodegener''. 2019 Jan 10; '''14''' (1):1
Lifespan Changes of the Human Brain In Alzheimer's Disease.
Description: Coupe, Pierrick, et al. Lifespan Changes of the Human Brain In Alzheimer's Disease. ''Sci Rep''. 2019 Mar 8; '''9''' (1):3998
Lactate topography of the human brain using hyperpolarized (13)C-MRI.
Description: Lee, Casey Y, et al. Lactate topography of the human brain using hyperpolarized (13)C-MRI. ''Neuroimage''. 2020 Jan 1; '''204''': 116202
Differential modulation of NREM sleep regulation and EEG topography by chronic sleep restriction in mice.
Description: Kim, Bowon, et al. Differential modulation of NREM sleep regulation and EEG topography by chronic sleep restriction in mice. ''Sci Rep''. 2020 Jan 10; '''10''' (1):18
Pattern of regional white matter hyperintensity volume in mild cognitive impairment subtypes and associations with decline in daily functioning.
Description: Bangen, Katherine J, et al. Pattern of regional white matter hyperintensity volume in mild cognitive impairment subtypes and associations with decline in daily functioning. ''Neurobiol Aging''. 2020 Feb; '''86''': 134-142
Automated White Matter Hyperintensity Segmentation Using Bayesian Model Selection: Assessment and Correlations with Cognitive Change.
Description: Fiford, Cassidy M, et al. Automated White Matter Hyperintensity Segmentation Using Bayesian Model Selection: Assessment and Correlations with Cognitive Change. ''Neuroinformatics''. 2020 Jun; '''18''' (3):429-449
Harnessing peripheral DNA methylation differences in the Alzheimer's Disease Neuroimaging Initiative (ADNI) to reveal novel biomarkers of disease.
Description: Vasanthakumar, Aparna, et al. Harnessing peripheral DNA methylation differences in the Alzheimer's Disease Neuroimaging Initiative (ADNI) to reveal novel biomarkers of disease. ''Clin Epigenetics''. 2020 Jun 15; '''12''' (1):84
AssemblyNet: A large ensemble of CNNs for 3D whole brain MRI segmentation.
Description: Coupe, Pierrick, et al. AssemblyNet: A large ensemble of CNNs for 3D whole brain MRI segmentation. ''Neuroimage''. 2020 Oct 1; '''219''': 117026
Identifying Imaging Genetics Biomarkers of Alzheimer's Disease by Multi-Task Sparse Canonical Correlation Analysis and Regression.
Description: Ke, Fengchun, et al. Identifying Imaging Genetics Biomarkers of Alzheimer's Disease by Multi-Task Sparse Canonical Correlation Analysis and Regression. ''Front Genet''. 2021; '''12''': 706986
Hippocampal transcriptome-wide association study and neurobiological pathway analysis for Alzheimer's disease.
Description: Liu, Nana, et al. Hippocampal transcriptome-wide association study and neurobiological pathway analysis for Alzheimer's disease. ''PLoS Genet''. 2021 Feb; '''17''' (2):e1009363
Toward a unified analysis of cerebellum maturation and aging across the entire lifespan: A MRI analysis.
Description: Romero, Jose E, et al. Toward a unified analysis of cerebellum maturation and aging across the entire lifespan: A MRI analysis. ''Hum Brain Mapp''. 2021 Apr 1; '''42''' (5):1287-1303
Hippocampal glucose uptake as a surrogate of metabolic change of microglia in Alzheimer's disease.
Description: Choi, Hongyoon, et al. Hippocampal glucose uptake as a surrogate of metabolic change of microglia in Alzheimer's disease. ''J Neuroinflammation''. 2021 Aug 31; '''18''' (1):190
Temporo-cerebellar connectivity underlies timing constraints in audition.
Description: Stockert, Anika, et al. Temporo-cerebellar connectivity underlies timing constraints in audition. ''Elife''. 2021 Sep 20; '''10''':
Quantitative Trait Loci Identification by Estimating the Genetic Model based on the Extremal Samples.
Description: Yang, Zining, et al. Quantitative Trait Loci Identification by Estimating the Genetic Model based on the Extremal Samples. ''Curr Genomics''. 2021 Dec 30; '''22''' (5):363-372
ATRI EDC: a novel cloud-native remote data capture system for large multicenter Alzheimer's disease and Alzheimer's disease-related dementias clinical trails.
Description: Jimenez-Maggiora, Gustavo A, et al. ATRI EDC: a novel cloud-native remote data capture system for large multicenter Alzheimer's disease and Alzheimer's disease-related dementias clinical trails. ''JAMIA Open''. 2022 Apr; '''5''' (1):ooab119
Increased regional white matter hyperintensity volume in objectively-defined subtle cognitive decline and mild cognitive impairment.
Description: Calcetas, Amanda T, et al. Increased regional white matter hyperintensity volume in objectively-defined subtle cognitive decline and mild cognitive impairment. ''Neurobiol Aging''. 2022 Oct; '''118''': 1-8
Multi-Omic analyses characterize the ceramide/sphingomyelin pathway as a therapeutic target in Alzheimer's disease.
Description: Baloni, Priyanka, et al. Multi-Omic analyses characterize the ceramide/sphingomyelin pathway as a therapeutic target in Alzheimer's disease. ''Commun Biol''. 2022 Oct 8; '''5''' (1):1074
eICAB: A novel deep learning pipeline for Circle of Willis multiclass segmentation and analysis.
Description: Dumais, Felix, et al. eICAB: A novel deep learning pipeline for Circle of Willis multiclass segmentation and analysis. ''Neuroimage''. 2022 Oct 15; '''260''': 119425
Altered functional connectivity pattern of hippocampal subfields in individuals with objectively-defined subtle cognitive decline and its association with cognition and cerebrospinal fluid biomarkers.
Description: Qiu, Tiantian, et al. Altered functional connectivity pattern of hippocampal subfields in individuals with objectively-defined subtle cognitive decline and its association with cognition and cerebrospinal fluid biomarkers. ''Eur J Neurosci''. 2022 Dec; '''56''' (12):6227-6238
Brain Derived Neurotrophic Factor Interacts with White Matter Hyperintensities to Influence Processing Speed and Hippocampal Volume in Older Adults.
Description: Brenner, Einat K, et al. Brain Derived Neurotrophic Factor Interacts with White Matter Hyperintensities to Influence Processing Speed and Hippocampal Volume in Older Adults. ''J Alzheimers Dis''. 2023; '''93''' (1):141-149
Hypoperfusion Precedes Tau Deposition in the Entorhinal Cortex: A Retrospective Evaluation of ADNI-2 Data.
Description: Kapadia, Anish, et al. Hypoperfusion Precedes Tau Deposition in the Entorhinal Cortex: A Retrospective Evaluation of ADNI-2 Data. ''J Clin Neurol''. 2023 Mar; '''19''' (2):131-137
Evidence against a temporal association between cerebrovascular disease and Alzheimer's disease imaging biomarkers.
Description: Cogswell, Petrice M, et al. Evidence against a temporal association between cerebrovascular disease and Alzheimer's disease imaging biomarkers. ''Nat Commun''. 2023 May 29; '''14''' (1):3097
Pulse pressure and APOE epsilon4 dose interact to affect cerebral blood flow in older adults without dementia.
Description: Edwards, Lauren, et al. Pulse pressure and APOE epsilon4 dose interact to affect cerebral blood flow in older adults without dementia. ''Cereb Circ Cogn Behav''. 2024; '''6''': 100206
Elevated plasma neurofilament light was associated with multi-modal neuroimaging features in Alzheimer's Disease signature regions and predicted future tau deposition.
Description: Hu, Qili, et al. Elevated plasma neurofilament light was associated with multi-modal neuroimaging features in Alzheimer's Disease signature regions and predicted future tau deposition. ''Res Sq''. 2024 Feb 19;
Effect of cerebral small vessel disease on the integrity of cholinergic system in mild cognitive impairment patients: a longitudinal study.
Description: Qiu, Tiantian, et al. Effect of cerebral small vessel disease on the integrity of cholinergic system in mild cognitive impairment patients: a longitudinal study. ''J Neurol''. 2024 May; '''271''' (5):2704-2715
CYP1B1-RMDN2 Alzheimer's disease endophenotype locus identified for cerebral tau PET.
Description: Nho, Kwangsik, et al. CYP1B1-RMDN2 Alzheimer's disease endophenotype locus identified for cerebral tau PET. ''Nat Commun''. 2024 Sep 20; '''15''' (1):8251
Reversibility of cognitive worsening observed with BACE inhibitor umibecestat in the Alzheimer's Prevention Initiative (API) Generation Studies.
Description: Tariot, Pierre N, et al. Reversibility of cognitive worsening observed with BACE inhibitor umibecestat in the Alzheimer's Prevention Initiative (API) Generation Studies. ''Alzheimers Dement''. 2024 Nov; '''20''' (11):7745-7761
Perivascular and parenchymal fluid characteristics are related to age and cognitive performance across the lifespan.
Description: Lynch, Kirsten M, et al. Perivascular and parenchymal fluid characteristics are related to age and cognitive performance across the lifespan. ''bioRxiv''. 2025 Feb 27;
Perivascular space mediated the interaction between sleep, and brain functional connectivity in the healthy aging population.
Description: Shih, Nien-Chu, et al. Perivascular space mediated the interaction between sleep, and brain functional connectivity in the healthy aging population. ''bioRxiv''. 2025 May 21;
Estimation of reference curves for brain atrophy and analysis of robustness to machine effects.
Description: Piot, Elodie, et al. Estimation of reference curves for brain atrophy and analysis of robustness to machine effects. ''Sci Rep''. 2025 Oct 3; '''15''' (1):34585