DWI/DTI Quality Control Tool: DTIPrep

DTIPrep performs a "Study-specific Protocol" based automatic pipeline for DWI/DTI quality control and preparation. This is both a GUI and command line tool. The configurable pipeline includes image/diffusion information check, padding/Cropping of data, slice-wise, interlace-wise and gradient-wise intensity and motion check, head motion and Eddy current artifact correction, and DTI computing.

Development of DTIPrep has been stopped, and DMRIPrep (within the DTI playground framework) is its successor (see https://github.com/NIRALUser/DTIPlaygrou...)

Execution Options

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Specifications

Category:

Application

License:

Apache License 2.0

Development Status:

3 - Alpha

Diagnosis:

Brain Injuries, Huntington Disease, Multiple Sclerosis, Parkinson Disease, Schizophrenia, Stroke

Domain:

Environment:

Console (Text Based), Win32 (MS Windows), X11 Applications

Intended Audience:

End Users

Natural Language:

English

Operating System:

MacOS, Windows XP, Linux

Programming Language:

C++

Supported Data Format:

Nrrd

Other Keywords:

control, dti, dwi, quality, tensor

Associations

is installed on:

NITRC Computational Environment (NITRC-CE)

is required to run:

UNC/Utah NAMIC DTI Fiber Analysis Framework

works well with:

DTIProcess ToolKit
NeuroStack

Recent Activity - Documents

Technical Publications documentation

Oguz et al: âDTIPrep: quality control of diffusion-weighted images,â Front Neuroinform, vol. 8, p. 4, 2014. posted by Martin Styner on Feb 5, 2016

Manuals documentation

DTI Quality Control Manual v3.1 (docx) posted by Francois Budin on Jan 14, 2014

Manuals documentation

DTI Quality Control Manual v3.1 (pdf) posted by Francois Budin on Jan 14, 2014

Technical Publications documentation

ENTROPY BASED DTI QUALITY CONTROL VIA REGIONAL ORIENTATION DISTRIBUTION ENTROPY BASED DTI QUALITY CONTROL VIA REGIONAL ORIENTATION DISTRIBUTION posted by Mahshid Farzinfar on Apr 19, 2013

SPIE Medical Imaging 2010 documentation

ENTROPY BASED DTI QUALITY CONTROL VIA REGIONAL ORIENTATION DISTRIBUTIONENTROPY BASED DTI QUALITY CONTROL VIA REGIONAL ORIENTATION DISTRIBUTION posted by Mahshid Farzinfar on Apr 19, 2013

Manuals documentation

DTI Quality Control Manual v0.5 (PDF) posted by Martin Styner on Feb 28, 2013

Manuals documentation

DTI Quality Control Manual v0.5 posted by Martin Styner on Feb 28, 2013

Manuals documentation

DTI Quality Control Manual v0.8 posted by Cheryl Dietrich on Feb 28, 2013

Manuals documentation

DTI Quality Control Manual v1.0 posted by Cheryl Dietrich on Feb 28, 2013

Manuals documentation

DTI Quality Control Manual v2.0 (pdf) posted by Cheryl Dietrich on Feb 28, 2013

Recent Activity - Forums

open-discussion forum

RE: Movement parameters extraction posted by Martin Styner on Jan 29

open-discussion forum

RE: Interlace Correlation values not saving in QCReport.txt posted by Martin Styner on Jan 29

open-discussion forum

Interlace Correlation values not saving in QCReport.txt posted by Daniel Berge on Jan 29

open-discussion forum

Movement parameters extraction posted by Daniel Berge on Jan 29

open-discussion forum

RE: Missing library when trying to launch DTIPrep 1.2.11 on Ubuntu 22.04 posted by Jon Haitz Legarreta GorroÃ±o on Jun 28, 2023

open-discussion forum

RE: Missing library when trying to launch DTIPrep 1.2.11 on Ubuntu 22.04 posted by Sang Kyoon Park on Jun 27, 2023

open-discussion forum

Missing library when trying to launch DTIPrep 1.2.11 on Ubuntu 22.04 posted by Jon Haitz Legarreta GorroÃ±o on Jun 26, 2023

open-discussion forum

RE: Using QC xml interlace and gradient angle/translation values in determining protocol thresholds posted by David Stephenson on Mar 22, 2023

open-discussion forum

RE: Using QC xml interlace and gradient angle/translation values in determining protocol thresholds posted by Martin Styner on Mar 13, 2023

open-discussion forum

Using QC xml interlace and gradient angle/translation values in determining protocol thresholds posted by David Stephenson on Mar 13, 2023

Recent Activity - Files

DWIConvert: DWIConvert_5.3._static (BRAINTools) release

BRAINSTools-Conversion.zip posted by Martin Styner on Nov 9, 2021

DTIPrep: DTIPrep1.2.11_linux64 release

DTIPrep-1.2.11.tar.gz posted by Sang Kyoon Park on Dec 1, 2020

DWIConvert: DWIConvert 5.3.0 release

DWIConver_5.3.0.zip posted by Martin Styner on Jul 3, 2020

DWIConvert: DWIConvert v4.6 release

DWIConvert_4.6.zip posted by Martin Styner on Jul 1, 2020

DTIPrep: DTIPrep1.2.9_rhel7 release

DTIPrep1.2.9_rhel7.tar.gz posted by Juan Prieto on Apr 27, 2020

DTIPrep: DTIPrep1.2.8_linux64 release

DTIPrepTools-1.2.8-Linux.tar.gz posted by Juan Prieto on Jun 16, 2017

DTIPrep: DTIPrep1.2.8_MacOSX release

DTIPrep1.2.8.tar.gz posted by Juan Prieto on May 31, 2017

DTIPrep: 1.2.8 release

DTIPrep1.2.8.tar.gz posted by Juan Prieto on May 31, 2017

DTIPrep: DTIPrep1.2.7_MacOSX release

DTIPrep1.2.7.tar.gz posted by Juan Prieto on Jun 2, 2016

DTIPrep: DTIPrep1.2.4_linux64 release

DTIPrep1.2.4_linux64.tar.gz posted by Francois Budin on Jun 6, 2014

Statistics more information

Home Page

RRID: SCR_009562

Funding: P30-HD003110-41, P50 MH064065-06, R01 HD055741-01, R01-HD059854-01, U54 EB005149 (NA-MIC), R01 NS060722, HD-003110, R01 MH091645, U54 HD079124

Documents: 16

PubMed Mentions: 0

Forums: 373 messages in 1 forum

News Items: 0

Total Downloads: 11047

Registered: Oct 14, 2009

Technical Publications: 5