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help > RE: Save Denoised Dataset
May 30, 2015 10:05 PM | Alfonso Nieto-Castanon - Boston University
RE: Save Denoised Dataset
Hi Charlotte,
In order to save the Denoised data in a format that can be directly ported to other packages please check in Setup.Options the checkbox that reads "create confound-corrected timeseries" and run your denoising step (or if you have already run denoising, you may type "conn_matc2nii", without the quotes, in Matlab command window to avoid having to repeat this step). That will create a series of files named niftiDATA_Subject*_Condition*.nii in your conn*/results/preprocessing/ folder containing the denoised functional timeseries.
Hope this helps
Alfonso
Originally posted by charlotte p:
In order to save the Denoised data in a format that can be directly ported to other packages please check in Setup.Options the checkbox that reads "create confound-corrected timeseries" and run your denoising step (or if you have already run denoising, you may type "conn_matc2nii", without the quotes, in Matlab command window to avoid having to repeat this step). That will create a series of files named niftiDATA_Subject*_Condition*.nii in your conn*/results/preprocessing/ folder containing the denoised functional timeseries.
Hope this helps
Alfonso
Originally posted by charlotte p:
Hello,
As I am new to data processing in this fantastic toolbox, I have what must be a rather basic questions - apologies in advance!
I am using conn to preprocess my structural and functional data.
After preprocessing, I could save the preprocessed dataset with these new modifications.
Now I have denoised my data with a set of the optional confounds, and would like to save this denoised dataset to proceed in another software, in order to conduct an Independent Component Analysis.
However, I can't find an option to save the dataset in its denoised state, and exiting conn will lose any unsaved progress.
Could you please tell me if there is a way to save the dataset in the state where it is denoised and the various confounds are regressed out?
Many thanks,
Kind regards,
Charlotte
As I am new to data processing in this fantastic toolbox, I have what must be a rather basic questions - apologies in advance!
I am using conn to preprocess my structural and functional data.
After preprocessing, I could save the preprocessed dataset with these new modifications.
Now I have denoised my data with a set of the optional confounds, and would like to save this denoised dataset to proceed in another software, in order to conduct an Independent Component Analysis.
However, I can't find an option to save the dataset in its denoised state, and exiting conn will lose any unsaved progress.
Could you please tell me if there is a way to save the dataset in the state where it is denoised and the various confounds are regressed out?
Many thanks,
Kind regards,
Charlotte
Threaded View
| Title | Author | Date |
|---|---|---|
| charlotte p | May 26, 2015 | |
| Alfonso Nieto-Castanon | May 30, 2015 | |
| charlotte p | Jul 9, 2015 | |