CONN : functional connectivity toolbox

CONN is a Matlab-based cross-platform software for the computation, display, and analysis of functional connectivity in fMRI (fcMRI).

Connectivity measures include Seed-to-Voxel connectivity maps, ROI-to-ROI connectivity matrices, graph properties of connectivity networks, and Voxel-to-Voxel measures (intrinsic connectivity, local correlation maps, and others).

CONN is available for resting state data (rsfMRI) as well as task-related designs. It covers the entire pipeline from raw fMRI data to hypothesis testing.

Highlights:
Control of physiological/movement effects (CompCor)
Artifact detection&scrubbing (ART)
Weighted correlation & PPI models for task-related designs
Dynamic connectivity analyses
FWE-control of connectivity matrices (NBS)
Connectome-wide analyses (MVPA)
Surface- and Volume-based analyses
Repeated measures and mixed within- between-subjects designs
Gui and automated batch options

http://web.mit.edu/swg/software.htm
SPM8/SPM12 compatible
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Specifications

Category:Connectivity Analysis, Modeling, Multivariate Analysis, Principal Component Analysis, Regression, Correlation, Visualization
License:MIT/X Consortium License
Development Status:4 - Beta
Domain:MR
Intended Audience:Developers, End Users
Natural Language:English
Operating System:OS Independent
Programming Language:MATLAB
Supported Data Format:ANALYZE, MGH/MGZ, NIfTI-1

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RE: Beta values from first level analysis posted by Kaitlin Cassady on Mar 2

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RE: Beta values from first level analysis posted by Fred Uquillas on Mar 1

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Beta values from first level analysis posted by Kaitlin Cassady on Feb 28

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RE: do number of ROIs affect FWE correction? posted by Fred Uquillas on Feb 26

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Graph Theory - size of nodes posted by Fred Uquillas on Feb 26

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Multivariate regression - second-level  posted by Jenna Traynor on Feb 26

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. posted by Fred Uquillas on Feb 26

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RE: Second level results? posted by Kaitlin Cassady on Feb 25

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RE: ART toolbox-parameter file explanation posted by Fred Uquillas on Feb 25

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RE: error message; conn batch 2nd level analyses posted by Julius Steding on Feb 25