CONN : functional connectivity toolbox

CONN is a Matlab-based cross-platform software for the computation, display, and analysis of functional connectivity in fMRI (fcMRI).

Measures include Seed-to-Voxel connectivity maps, ROI-to-ROI connectivity and graph metrics, Independent Components (ICA networks), local homogeneity, intrinsic connectivity, centrality, etc.

CONN is available for resting state data (rsfMRI) as well as task-related designs. It covers the entire pipeline from raw fMRI data to hypothesis testing.

Highlights:
Control of physiological/movement effects (CompCor)
Artifact detection&scrubbing (ART)
Weighted GLM, PPI, and gPPI models for task-related designs
Connectome-wide analyses (group-ICA, MVPA)
Dynamic connectivity analyses
FWE-control of connectivity matrices (NBS)
Parametric and non-parametric statistics (RFT, permutation tests)
ANOVA, regression, longitudinal, and mixed designs

GUI and batch processing
Parallelization options (SGE/Grid Engine, PBS/Torque, LSF, Slurm)
Mac/Windows/Linux
SPM8/SPM12
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Specifications

Category:Connectivity Analysis, Modeling, Multivariate Analysis, Principal Component Analysis, Regression, Correlation, Visualization
License:MIT/X Consortium License
Development Status:4 - Beta
Domain:MR
Intended Audience:Developers, End Users
Natural Language:English
Operating System:OS Independent
Programming Language:MATLAB
Supported Data Format:ANALYZE, MGH/MGZ, NIfTI-1

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head movement threshold issue (Alfonso?) posted by Fran  13 minutes ago

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RE: Surface Display bug? posted by Jeff Browndyke 1 hour ago

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extracting ROI timeseries at individual level posted by Arianna Gard 3 hours ago

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RE: ROIs MNI-->native space posted by Athena Demertzi 5 hours ago

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RE: questions about calculating task-related fc posted by Bingjiang Lyu 5 hours ago

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RE: CONN 2nd lvl contrasts posted by Jan Losak 11 hours ago

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RE: interaction effects conn posted by charlotte p 21 hours ago

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RE: Select scans for high number of subjects posted by Alfonso Nieto-Castanon 22 hours ago

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RE: Surface Display bug? posted by Alfonso Nieto-Castanon 23 hours ago

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RE: event-related functional connectivity posted by Alfonso Nieto-Castanon 23 hours ago