CONN : functional connectivity toolbox

CONN is a Matlab-based cross-platform software for the computation, display, and analysis of functional connectivity in fMRI (fcMRI).

CONN includes a rich set of connectivity analyses (seed-based correlations, ROI-to-ROI graph analyses, group ICA, masked ICA, generalized PPI, ALFF, ICC, GCOR, LCOR, etc.) in a simple-to-use and powerful software package

CONN is available for resting state data (rsfMRI) as well as task-related designs. It covers the entire pipeline from raw fMRI data to hypothesis testing.

Highlights:
Comprehensive quality assurance methods/measures/displays (scrubbing/ART, CompCor/ICA/GSR denoising, GCOR/FD QC covariates)
Connectome-wide analyses (ICA, MVPA)
Dynamic connectivity analyses (dyn-ICA)
FWE-control of connectivity matrices (NBS)
Non-parametric cluster-level statistics (permutation tests)
ANOVA, regression, longitudinal, and mixed designs

GUI and batch processing
Parallelization options (SGE/Grid Engine, PBS/Torque, LSF, Slurm)
Mac/Windows/Linux/HPC
SPM8/SPM12
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Specifications

Category:Connectivity Analysis, Modeling, Multivariate Analysis, Principal Component Analysis, Regression, Correlation, Visualization
License:MIT/X Consortium License
Development Status:4 - Beta
Domain:MR
Intended Audience:Developers, End Users
Natural Language:English
Operating System:OS Independent
Programming Language:MATLAB
Supported Data Format:ANALYZE, MGH/MGZ, NIfTI-1

Recent Activity

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RE: ART thresholds posted by Douglas Sturim 4 hours ago

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error during Dyn-ICA circuits  posted by sang soo cho 19 hours ago

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RE: Semipartial correlation and circularity posted by Shady El Damaty 19 hours ago

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RE: No ROI-to-ROI / not more than 6 ICA? posted by Heidi Jacobs on Feb 23

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Any effect vs. Simple main effect posted by Jenna Traynor on Feb 22

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RE: separate group covariates vs one covariate posted by Alice Yo on Feb 22

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RE: Error in Denoising, no conn_process_9 posted by Leonie Duehlmeyer on Feb 22

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RE: error in setup posted by cao yankun on Feb 21

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RE: error in setup posted by Pravesh Parekh on Feb 21

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error in setup posted by cao yankun on Feb 21