CONN : functional connectivity toolbox

CONN is a Matlab-based cross-platform software for the computation, display, and analysis of functional connectivity in fMRI (fcMRI).

Connectivity measures include Seed-to-Voxel connectivity maps, ROI-to-ROI connectivity matrices, graph metrics, ICA networks, and other Voxel-to-Voxel measures.

CONN is available for resting state data (rsfMRI) as well as task-related designs. It covers the entire pipeline from raw fMRI data to hypothesis testing.

Highlights:
Control of physiological/movement effects (CompCor)
Artifact detection&scrubbing (ART)
Weighted correlation, PPI, and gPPI models for task-related designs
Connectome-wide analyses (group-ICA, MVPA)
Dynamic connectivity analyses
Surface- and Volume-based analyses
FWE-control of connectivity matrices (NBS)
Parametric and non-parametric statistics (RFT, permutation tests)
ANOVA, regression, longitudinal, and mixed designs

GUI and batch processing
Parallelization options (Grid Engine, PBS/Torque, LSF)
Mac/Windows/Linux
SPM8/SPM12
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Specifications

Category:Connectivity Analysis, Modeling, Multivariate Analysis, Principal Component Analysis, Regression, Correlation, Visualization
License:MIT/X Consortium License
Development Status:4 - Beta
Domain:MR
Intended Audience:Developers, End Users
Natural Language:English
Operating System:OS Independent
Programming Language:MATLAB
Supported Data Format:ANALYZE, MGH/MGZ, NIfTI-1

Recent Activity

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positive/negative connectivity analysis? posted by Fran  5 hours ago

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RE: A couple if issues: confounds, ART, MVPA stat posted by Lucas Moro 9 hours ago

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z= inf meaning? posted by Fran  on May 5

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RE: Your advice on laterality analysis (Alfonso?) posted by Fran  on May 5

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RE: second-level analysis in Conn posted by Diana Parvinchi on May 5

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RE: Average within / between network connectivity posted by Alfonso Nieto-Castanon on May 5

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RE: Error in CONN after Denoising posted by Alfonso Nieto-Castanon on May 5

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RE: Error with file mask_swu posted by Alfonso Nieto-Castanon on May 5

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RE: Your advice on laterality analysis (Alfonso?) posted by Alfonso Nieto-Castanon on May 5

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Your advice on laterality analysis (Alfonso?) posted by Fran  on May 5