CONN : functional connectivity toolbox

CONN is a Matlab-based cross-platform software for the computation, display, and analysis of functional connectivity in fMRI (fcMRI).

Connectivity measures include Seed-to-Voxel connectivity maps, ROI-to-ROI connectivity matrices, graph properties of connectivity networks, and Voxel-to-Voxel measures (intrinsic connectivity, local correlation maps, and others).

CONN is available for resting state data (rsfMRI) as well as task-related designs. It covers the entire pipeline from raw fMRI data to hypothesis testing.

Highlights:
Control of physiological/movement effects (CompCor)
Artifact detection&scrubbing (ART)
Weighted correlation, PPI, and gPPI models for task-related designs
Dynamic connectivity analyses
FWE-control of connectivity matrices (NBS)
Connectome-wide analyses (MVPA)
Surface- and Volume-based analyses
Parallel batch computing (SGE, PCT)
ANOVA, regression, and mixed within- between-subjects designs

http://web.mit.edu/swg/software.htm
SPM8/SPM12 compatible
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Specifications

Category:Connectivity Analysis, Modeling, Multivariate Analysis, Principal Component Analysis, Regression, Correlation, Visualization
License:MIT/X Consortium License
Development Status:4 - Beta
Domain:MR
Intended Audience:Developers, End Users
Natural Language:English
Operating System:OS Independent
Programming Language:MATLAB
Supported Data Format:ANALYZE, MGH/MGZ, NIfTI-1

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Task-based error posted by John Hutton 4 hours ago

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Funtional Normalization - Batch first volume posted by Roger Mateu 11 hours ago

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RE: Possibly different connectivty values posted by Pravesh Parekh 12 hours ago

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Possibly different connectivty values posted by Pravesh Parekh 12 hours ago

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RE: Graph Theory correlation measures posted by Ben Crittenden 14 hours ago

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RE: Voxel-to-Voxel analysis posted by Annie Möller 16 hours ago

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RE: second-level analysis in Conn posted by Diana Parvinchi on Aug 31

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RE: Strange voxel-to-voxel results posted by Adam Geiger on Aug 31

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second-level analysis in Conn posted by Diana Parvinchi on Aug 31

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RE: second-level analysis in Conn posted by Diana Parvinchi on Aug 31