CONN : functional connectivity toolbox

CONN is a Matlab-based cross-platform software for the computation, display, and analysis of functional connectivity in fMRI (fcMRI).

Connectivity measures include Seed-to-Voxel connectivity maps, ROI-to-ROI connectivity matrices, graph properties of connectivity networks, and Voxel-to-Voxel measures (intrinsic connectivity, local correlation maps, and others).

CONN is available for resting state data (rsfMRI) as well as task-related designs. It covers the entire pipeline from raw fMRI data to hypothesis testing.

Highlights:
Control of physiological/movement effects (CompCor)
Artifact detection&scrubbing (ART)
Weighted correlation & PPI models for task-related designs
Dynamic connectivity analyses
FWE-control of connectivity matrices (NBS)
Connectome-wide analyses (MVPA)
Surface- and Volume-based analyses
Repeated measures and mixed within- between-subjects designs
Gui and automated batch options

http://web.mit.edu/swg/software.htm
SPM8/SPM12 compatible
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Specifications

Category:Connectivity Analysis, Modeling, Multivariate Analysis, Principal Component Analysis, Regression, Correlation, Visualization
License:MIT/X Consortium License
Development Status:4 - Beta
Domain:MR
Intended Audience:Developers, End Users
Natural Language:English
Operating System:OS Independent
Programming Language:MATLAB
Supported Data Format:ANALYZE, MGH/MGZ, NIfTI-1

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RE: Effect of condition included in list of ROIs? posted by Alfonso Nieto-Castanon 5 hours ago

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RE: Effect of condition included in list of ROIs? posted by Nicola Toschi 8 hours ago

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RE: Effect of condition included in list of ROIs? posted by Alfonso Nieto-Castanon 9 hours ago

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RE: r or z value for post-hoc tests´╝č posted by Yang Yang 18 hours ago

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Effect of condition included in list of ROIs? posted by Nicola Toschi 19 hours ago

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Seed-to-voxel analysis error posted by Karolina Finc on May 26

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ROI-to-ROI with covariate, blocked design posted by Claudia Lazarides on May 26

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Save Denoised Dataset posted by charlotte p on May 26

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RE: Dynamic Functional Connectivity Error posted by Kaitlin Cassady on May 25

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extract data of second level ROI-to-ROI posted by Olaia Lucas on May 25