CONN : functional connectivity toolbox

CONN is a Matlab-based cross-platform software for the computation, display, and analysis of functional connectivity in fMRI (fcMRI).

Connectivity measures include seed-to-voxel connectivity maps, ROI-to-ROI connectivity matrices, graph properties of connectivity networks, and voxel-to-voxel measures (intrinsic connectivity, local correlation maps, and others).

CONN is available for resting state data (rsfMRI) as well as task-related designs. It covers the entire pipeline from raw fMRI data to hypothesis testing.

Method highlights:
Gui and automated batch options
Control of physiological/movement confounds (CompCor)
Artifact detection/scrubbing (ART)
Surface- and Volume- based connectivity maps
Weighted correlation & PPI models for task-related designs
Dynamic connectivity analyses
FWE-control of connectivity matrices (NBS)
Analyses of voxel-to-voxel connectivity maps (MVPA)
Repeated measures and mixed within- between-subjects designs

http://web.mit.edu/swg/software.htm
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Specifications

Category:Connectivity Analysis, Modeling, Multivariate Analysis, Principal Component Analysis, Regression, Correlation, Visualization
License:MIT/X Consortium License
Development Status:4 - Beta
Domain:MR
Intended Audience:Developers, End Users
Natural Language:English
Operating System:OS Independent
Programming Language:MATLAB
Supported Data Format:ANALYZE, NIfTI-1

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RE: Different TRs in version 13.l posted by Mary Newsome 2 hours ago

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Error in Segmentation  posted by Margaret O'Connell 2 hours ago

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T-Value colour legend posted by Julia Landsiedel 11 hours ago

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Crashing with Large Data-set during Denoising posted by Tom Mole on Aug 26

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RE: preprocessed images  posted by Mahsa Shokouhi on Aug 25

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RE: preprocessed images  posted by Eugenio Abela on Aug 25

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preprocessed images  posted by Mahsa Shokouhi on Aug 25

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ROI-to-ROI color coding posted by Jacqueline Krajnik on Aug 20

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Parallel Processing with Sun Grid Engine posted by Seqian Wang on Aug 19

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ILC Maps posted by Eileen Persichetti on Aug 19