CONN : functional connectivity toolbox

CONN is a Matlab-based cross-platform software for the computation, display, and analysis of functional connectivity in fMRI (fcMRI).

CONN includes a rich set of connectivity analyses (seed-based correlations, ROI-to-ROI graph analyses, group ICA, masked ICA, generalized PPI, ALFF, ICC, GCOR, LCOR, etc.) in a simple-to-use and powerful software package

CONN is available for resting state data (rsfMRI) as well as task-related designs. It covers the entire pipeline from raw fMRI data to hypothesis testing.

Highlights:
Comprehensive quality assurance methods/measures/displays (scrubbing/ART, CompCor/ICA/GSR denoising, GCOR/FD QC covariates)
Connectome-wide analyses (ICA, MVPA)
Dynamic connectivity analyses (dyn-ICA)
FWE-control of connectivity matrices (NBS)
Non-parametric cluster-level statistics (permutation tests)
ANOVA, regression, longitudinal, and mixed designs

GUI and batch processing
Parallelization options (SGE/Grid Engine, PBS/Torque, LSF, Slurm)
Mac/Windows/Linux/HPC
SPM8/SPM12
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Specifications

Category:Connectivity Analysis, Modeling, Multivariate Analysis, Principal Component Analysis, Regression, Correlation, Visualization
License:MIT/X Consortium License
Development Status:4 - Beta
Domain:MR
Intended Audience:Developers, End Users
Natural Language:English
Operating System:OS Independent
Programming Language:MATLAB
Supported Data Format:ANALYZE, MGH/MGZ, NIfTI-1

Recent Activity

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Batch scripting for results visualisation? posted by Malgorzata Wierzba 9 hours ago

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Negative Correlation analysis with Age posted by Vasudev Devulapally 18 hours ago

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RE: Using CONN data on SPM first level analysis posted by Lanxin Ji 22 hours ago

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seed-to-voxel Seed Question posted by Margaret O'Connell 23 hours ago

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RE: Interpreting seed to Voxel results posted by Vasudev Devulapally on May 24

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RE: Loading multiple ROIs posted by Kaitlin Cassady on May 24

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RE: Loading multiple ROIs posted by Kaitlin Cassady on May 24

File Activity

conn: files for HPC / distributed cluster installation release

conn17e_glnxa64.zip posted by Alfonso Nieto-Castanon on May 24

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RE: Extreme first-level connectivity preview valu posted by Alfonso Nieto-Castanon on May 23

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RE: principal component decomposition question posted by Alfonso Nieto-Castanon on May 23