CONN : functional connectivity toolbox

CONN is a Matlab-based cross-platform software for the computation, display, and analysis of functional connectivity in fMRI (fcMRI).

Measures include Seed-to-Voxel connectivity maps, ROI-to-ROI connectivity and graph metrics, Independent Components (ICA networks), local homogeneity, intrinsic connectivity, centrality, etc.

CONN is available for resting state data (rsfMRI) as well as task-related designs. It covers the entire pipeline from raw fMRI data to hypothesis testing.

Highlights:
Control of physiological/movement effects (CompCor)
Artifact detection&scrubbing (ART)
Weighted GLM, PPI, and gPPI models for task-related designs
Connectome-wide analyses (group-ICA, MVPA)
Dynamic connectivity analyses
FWE-control of connectivity matrices (NBS)
Parametric and non-parametric statistics (RFT, permutation tests)
ANOVA, regression, longitudinal, and mixed designs

GUI and batch processing
Parallelization options (SGE/Grid Engine, PBS/Torque, LSF, Slurm)
Mac/Windows/Linux
SPM8/SPM12
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Specifications

Category:Connectivity Analysis, Modeling, Multivariate Analysis, Principal Component Analysis, Regression, Correlation, Visualization
License:MIT/X Consortium License
Development Status:4 - Beta
Domain:MR
Intended Audience:Developers, End Users
Natural Language:English
Operating System:OS Independent
Programming Language:MATLAB
Supported Data Format:ANALYZE, MGH/MGZ, NIfTI-1

Recent Activity

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RE: No condition visible: no data --> error posted by Heidi Jacobs 14 hours ago

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RE: Setup taking a very long time posted by Caitlin Duncan 17 hours ago

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Locating individual subject Beta value posted by Nicole Nissim on Aug 26

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No condition visible: no data --> error posted by Heidi Jacobs on Aug 26

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atrophy correction and ROI-to-ROI individual  posted by Heidi Jacobs on Aug 25

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ROIs default posted by Andrew Martin on Aug 24

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RE: Batch -- Preprocessing Error posted by Alina inu on Aug 24

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T value interpretation in 2nd level analysis posted by Magno Guillen on Aug 23

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ART outlire detection function Instructions? posted by Fran  on Aug 23

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contrast help posted by Andrew Martin on Aug 22