CONN : functional connectivity toolbox
CONN includes a rich set of connectivity analyses (seed-based correlations, ROI-to-ROI graph analyses, ICA, masked ICA, fc-MVPA, generalized PPI, ALFF, ICC, GCOR, LCOR, etc.) in a simple-to-use and powerful software package
CONN is available for resting state data (rsfMRI) as well as task-related designs. It covers the entire pipeline from raw fMRI data to hypothesis testing.
Highlights:
Comprehensive quality assurance methods/measures/displays (scrubbing/ART, CompCor/ICA/GSR denoising, GCOR/FD QC covariates)
Connectome-wide analyses (ICA, fc-MVPA)
Dynamic connectivity analyses (dyn-ICA)
FWE-control of connectivity matrices (NBS)
Non-parametric cluster-level statistics (permutation tests)
ANOVA, regression, longitudinal, and mixed designs
Parallelization options (SGE/Grid Engine, PBS/Torque, LSF, Slurm)
Mac/Windows/Linux/HPC
SPM8/SPM12
https://www.conn-toolbox.org
Execution Options
Specifications
Associations
Recent Activity - Forums
Issue Deleting/Adding ROIs posted by Katie Gibbs 14 hours ago
RE: HPC Help posted by Collin Wilson 17 hours ago
Between-network graph theory posted by max345 19 hours ago
Two different sliding window analyses in the same CONN project posted by jasminstein 19 hours ago
Seed based but using R2R analysis type of plot? posted by Renzo Torrecuso on Apr 26
2x2 repeated measures ANCOVA possible in CONN? posted by Peter Skov-Andersen on Apr 25
RE: Flat ROI values for surface-based analysis posted by tposside on Apr 25
RE: conn_batch distributed preprocessing posted by Alfonso Nieto-Castanon on Apr 25
RE: subgroup analysis posted by Alfonso Nieto-Castanon on Apr 25
RE: CONN Matrix display posted by Alfonso Nieto-Castanon on Apr 25
Recent Activity - News
Online CONN 2023 workshop starting soon posted by Alfonso Nieto-Castanon on Nov 9, 2023
CONN new release posted by Alfonso Nieto-Castanon on Mar 15, 2023
CONN new release posted by Alfonso Nieto-Castanon on Feb 18, 2020
New CONN release and tutorials posted by Alfonso Nieto-Castanon on Jun 27, 2017
CONN New Year News posted by Alfonso Nieto-Castanon on Jan 12, 2017
CONN new release (15f) posted by Alfonso Nieto-Castanon on Sep 25, 2015
Announcing Cincinnati CONN course (MGH/HST) posted by Alfonso Nieto-Castanon on Jun 9, 2015
CONN v.13n Released posted by Alfonso Nieto-Castanon on Jul 8, 2013
conn toolbox version 13 released posted by Alfonso Nieto-Castanon on Oct 31, 2011
Recent Activity - Files
conn22a.zip posted by Alfonso Nieto-Castanon on Mar 10, 2023
conn: older releases: conn v.21.a (last 2021 release) release
conn21a.zip posted by Alfonso Nieto-Castanon on Dec 31, 2021
conn: older releases: conn v.20.b (last 2020 release) release
conn20b.zip posted by Alfonso Nieto-Castanon on Dec 1, 2020
conn: older releases: conn v.19.c (last 2019 release) release
conn19c.zip posted by Alfonso Nieto-Castanon on Mar 14, 2020