CONN : functional connectivity toolbox

CONN is a Matlab-based cross-platform software for the computation, display, and analysis of functional connectivity in fMRI (fcMRI).

CONN includes a rich set of connectivity analyses (seed-based correlations, ROI-to-ROI graph analyses, group ICA, masked ICA, generalized PPI, ALFF, ICC, GCOR, LCOR, etc.) in a simple-to-use and powerful software package

CONN is available for resting state data (rsfMRI) as well as task-related designs. It covers the entire pipeline from raw fMRI data to hypothesis testing.

Highlights:
Comprehensive quality assurance methods/measures/displays (scrubbing/ART, CompCor/ICA/GSR denoising, GCOR/FD QC covariates)
Connectome-wide analyses (ICA, MVPA)
Dynamic connectivity analyses (dyn-ICA)
FWE-control of connectivity matrices (NBS)
Non-parametric cluster-level statistics (permutation tests)
ANOVA, regression, longitudinal, and mixed designs

GUI and batch processing
Parallelization options (SGE/Grid Engine, PBS/Torque, LSF, Slurm)
Mac/Windows/Linux/HPC
SPM8/SPM12
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Specifications

Category:Connectivity Analysis, Modeling, Multivariate Analysis, Principal Component Analysis, Regression, Correlation, Visualization
License:MIT/X Consortium License
Development Status:4 - Beta
Domain:MR
Intended Audience:Developers, End Users
Natural Language:English
Operating System:OS Independent
Programming Language:MATLAB
Supported Data Format:ANALYZE, MGH/MGZ, NIfTI-1

Recent Activity

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RE: Error at segmentation step posted by Alfonso Nieto-Castanon on Apr 19

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Error at segmentation step posted by Tatyana Mukhina on Apr 19

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white matter result posted by Jennifer Siegel  on Apr 19

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Exploring the results of CONN second level  posted by Hussam Metwali on Apr 19

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RE: Principal component decomposition question posted by Jenna Traynor on Apr 19

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error in conn when selecting all ROIs  posted by Lavinia Carmen Uscatescu on Apr 19

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RE: Update to Standalone CONN? posted by Alfonso Nieto-Castanon on Apr 18

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RE: Update to Standalone CONN? posted by Damon Lamb on Apr 18

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Distance - correlation plot posted by Alain Imaging on Apr 18

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Update to Standalone CONN? posted by eric Porges on Apr 18