CONN : functional connectivity toolbox

CONN is a Matlab-based cross-platform software for the computation, display, and analysis of functional connectivity in fMRI (fcMRI).

Measures include Seed-to-Voxel connectivity maps, ROI-to-ROI connectivity and graph metrics, Independent Components (ICA networks), local homogeneity, intrinsic connectivity, etc.

CONN is available for resting state data (rsfMRI) as well as task-related designs. It covers the entire pipeline from raw fMRI data to hypothesis testing.

Highlights:
Comprehensive quality assurance (scrubbing/ART, CompCor/ICA/GSR denoising, GCOR/FD QC covariates)
Weighted GLM and gPPI models for task-related designs
Connectome-wide analyses (group-ICA, MVPA)
Dynamic connectivity analyses (dyn-ICA)
Parametric and non-parametric statistics (RFT, permutation tests)
FWE-control of connectivity matrices (NBS)
ANOVA, regression, longitudinal, and mixed designs

GUI and batch processing
Parallelization options (SGE/Grid Engine, PBS/Torque, LSF, Slurm)
Mac/Windows/Linux/HPC
SPM8/SPM12
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Specifications

Category:Connectivity Analysis, Modeling, Multivariate Analysis, Principal Component Analysis, Regression, Correlation, Visualization
License:MIT/X Consortium License
Development Status:4 - Beta
Domain:MR
Intended Audience:Developers, End Users
Natural Language:English
Operating System:OS Independent
Programming Language:MATLAB
Supported Data Format:ANALYZE, MGH/MGZ, NIfTI-1

Recent Activity

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2nd level group comparison contrast question posted by Erin Burke 2 hours ago

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RE: Importing ROI data posted by Hadeer Emam 2 hours ago

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conditions as first level covariates posted by Alain Imaging 10 hours ago

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Signal orthogonalisation posted by Fabienne Samson 22 hours ago

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REX results, a possible bug? posted by Vahab Youssofzadeh on Jan 17

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CONN analysis using Resting-State data posted by Vikram S on Jan 16

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outlier and movement files (.mat) for SPM posted by Andrew Martin on Jan 15

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Delete a session posted by Fereshteh saliminia on Jan 14

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Time-frequency decomposition posted by Peter McColgan on Jan 14

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RE: processing fMRI files posted by Douglas Sturim on Jan 13