CONN : functional connectivity toolbox

CONN is a Matlab-based cross-platform software for the computation, display, and analysis of functional connectivity in fMRI (fcMRI).

Measures include Seed-to-Voxel connectivity maps, ROI-to-ROI connectivity and graph metrics, Independent Components (ICA networks), local homogeneity, intrinsic connectivity, etc.

CONN is available for resting state data (rsfMRI) as well as task-related designs. It covers the entire pipeline from raw fMRI data to hypothesis testing.

Highlights:
Comprehensive quality assurance (scrubbing/ART, CompCor/ICA/GSR denoising, GCOR/FD QC covariates)
Weighted GLM and gPPI models for task-related designs
Connectome-wide analyses (group-ICA, MVPA)
Dynamic connectivity analyses (dyn-ICA)
Parametric and non-parametric statistics (RFT, permutation tests)
FWE-control of connectivity matrices (NBS)
ANOVA, regression, longitudinal, and mixed designs

GUI and batch processing
Parallelization options (SGE/Grid Engine, PBS/Torque, LSF, Slurm)
Mac/Windows/Linux/HPC
SPM8/SPM12
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Specifications

Category:Connectivity Analysis, Modeling, Multivariate Analysis, Principal Component Analysis, Regression, Correlation, Visualization
License:MIT/X Consortium License
Development Status:4 - Beta
Domain:MR
Intended Audience:Developers, End Users
Natural Language:English
Operating System:OS Independent
Programming Language:MATLAB
Supported Data Format:ANALYZE, MGH/MGZ, NIfTI-1

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RE: Error in preprocessing (realign) posted by Alfonso Nieto-Castanon 1 minute ago

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RE: Updating reference posted by Alfonso Nieto-Castanon 12 minutes ago

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RE: connectivity in CSF posted by Alfonso Nieto-Castanon 20 minutes ago

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RE: error messages throughout pipeline posted by Alfonso Nieto-Castanon 31 minutes ago

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time courses from cut-off areas posted by Yacila Isabela Deza Araujo 1 hour ago

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error messages throughout pipeline posted by Eran Dayan 3 hours ago

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RE: Combining Seeds posted by Pravesh Parekh 3 hours ago

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RE: Combining Seeds posted by Humza Ahmed 4 hours ago

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RE: Combining Seeds posted by Pravesh Parekh 5 hours ago

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Combining Seeds posted by Humza Ahmed 5 hours ago