JIP fMRI Analysis Toolkit

Refer to http://www.nmr.mgh.harvard.edu/~jbm/jip for web documentation (in progress). The JIP Toolkit was developed primarily for analysis of rodent and non-human primate fMRI data. The toolkit consists of binary executables, highly portable open-source c code, and image resources that enable 1) Automated registration based upon mutual information (affine, non-linear warps), with flexible control and visualization of each step; 2) visualization of 4-dimensional data using either mosaic or tri-planar display of the z/slice dimension, and integration of a general linear model for graphical display of time series analysis; 3) A simple and flexible 1st-order GLM for fMRI time series analysis, a 1st-order GLM analysis for PET data within the SRTM framework, plus a 2nd-order GLM analysis following the Worsley 2002 scheme, and 4) MRI templates to place your rodent and non-human primate data into standardized spaces.
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Specifications

Category:Atlas Data, Atlas Application, Image-to-Image, Resampling, Affine Warp, Nonlinear Warp, Time Domain Analysis, Image Display
License:MGH CSRL License
Development Status:4 - Beta
Domain:MR, PET/SPECT
Environment:Console (Text Based), X11 Applications
Intended Audience:Developers, End Users
Natural Language:English
Operating System:MacOS, Linux
Programming Language:C
Supported Data Format:NIfTI-1, Other Format

Recent Activity

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Cygwin-executables: Cygwin executables release

jip-Cygwin.tar.gz posted by Joseph Mandeville on Jan 15, 2013

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jip-source: v3.0 release

jip-source.tar.gz posted by Joseph Mandeville on Dec 20, 2012

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jip-executables: v3.0 release

jip-executables.tar.gz posted by Joseph Mandeville on Dec 20, 2012

Forum Activity

open-discussion forum

RE: JIP installation on windows posted by Joseph Mandeville on Jul 19, 2011

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open-discussion forum

JIP installation on windows posted by Alessandra Paladini on Jul 8, 2011

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open-discussion forum

RE: Welcome to Open-Discussion posted by Joseph Mandeville on Feb 23, 2011

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open-discussion forum

RE: Welcome to Open-Discussion posted by Katelin Engerer on Feb 23, 2011

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open-discussion forum

RE: bash shell definition script posted by Joseph Mandeville on Jan 23, 2011

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open-discussion forum

bash shell definition script posted by Joseph Mandeville on Jan 19, 2011

File Activity

jip-overview: v2.1 release

jip-overview.pdf posted by Joseph Mandeville on Jan 16, 2011