JIST: Java Image Science Toolkit

Java Image Science Toolkit (JIST) provides a native Java-based imaging processing environment similar to the ITK/VTK paradigm. Initially developed as an extension to MIPAV (CIT, NIH, Bethesda, MD), the JIST processing infrastructure provides automated GUI generation for application plug-ins, graphical layout tools, and command line interfaces.

This repository maintains the current multi-institutional JIST development tree and is recommended for public use and extension. To participate in this consortium or seek assistance in integrating JIST modules in your application, please contact us at jist-admin@www.nitrc.org.

JIST was originally developed at IACL and MedIC (Johns Hopkins University) and is now also supported by MASI (Vanderbilt University).

Please use the download nightly build link below to retrieve a currently supported version of JIST. The previous versions are available for archival access.
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Specifications

Category:Experimental Control, Modeling, Quantification, Segmentation, Shape Analysis, Spatial Transformation, Workflow
License:GNU Lesser General Public License (LGPL)
Development Status:4 - Beta
Domain:MR
Environment:Console (Text Based), Other Environment, Win32 (MS Windows), X11 Applications
Intended Audience:Developers, End Users
Natural Language:English
Operating System:MacOS, Windows, OS Independent, BSD, Linux, SunOS/Solaris
Programming Language:Java
Supported Data Format:AFNI BRIK, ANALYZE, COR, DICOM, GIfTI, MGH/MGZ, MINC, MINC2, NIfTI-1, Nrrd, Other Format, Philips PAR/REC

Recent Activity

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help forum

JIST installation problem posted by Seongjin Choi on Feb 1

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RE: SPECTRE2010 posted by Aaron Carass on Dec 4, 2015

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RE: Set default atlas in JIST Layout Tool posted by Aaron Carass on Dec 4, 2015

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help forum

parameter panel does not interact with layout posted by Emma Sprooten on Aug 21, 2015

Tracker Activity

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JIST download link from main summary page seems to be down posted by Bennett Landman on Aug 9, 2015

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JIST process manager does not recognize and execute more than 1 experiment posted by Bennett Landman on Aug 9, 2015

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How to commit new JIST plugins to source codebase? posted by Bennett Landman on Aug 9, 2015

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running Lesion-TOADS posted by Bennett Landman on Aug 9, 2015

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running Lesion-TOADS posted by Adam Kalina on Aug 9, 2015

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Bugs tracker

Command line does not allow parameters of -1 posted by Andrew Plassard on May 6, 2015