JIST: Java Image Science Toolkit

Java Image Science Toolkit (JIST) provides a native Java-based imaging processing environment similar to the ITK/VTK paradigm. Initially developed as an extension to MIPAV (CIT, NIH, Bethesda, MD), the JIST processing infrastructure provides automated GUI generation for application plug-ins, graphical layout tools, and command line interfaces.

This repository maintains the current multi-institutional JIST development tree and is recommended for public use and extension. To participate in this consortium or seek assistance in integrating JIST modules in your application, please contact us at jist-admin@www.nitrc.org.

JIST was originally developed at IACL and MedIC (Johns Hopkins University) and is now also supported by MASI (Vanderbilt University).

Please use the download nightly build link below to retrieve a currently supported version of JIST. The previous versions are available for archival access.
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Specifications

Category:Experimental Control, Modeling, Quantification, Segmentation, Shape Analysis, Spatial Transformation, Workflow
License:GNU Lesser General Public License (LGPL)
Development Status:4 - Beta
Domain:MR
Environment:Console (Text Based), Other Environment, Win32 (MS Windows), X11 Applications
Intended Audience:Developers, End Users
Natural Language:English
Operating System:MacOS, Windows, OS Independent, BSD, Linux, SunOS/Solaris
Programming Language:Java
Supported Data Format:AFNI BRIK, ANALYZE, COR, DICOM, GIfTI, MGH/MGZ, MINC, MINC2, NIfTI-1, Nrrd, Other Format, Philips PAR/REC

Recent Activity

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Running JIST Layouts on command line posted by Emma Sprooten 13 hours ago

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Running JIST Layouts on command line posted by Andrew Plassard 14 hours ago

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Running JIST Layouts on command line posted by Stephen Damon on Apr 14

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Running JIST Layouts on command line posted by Bennett Landman on Apr 14

Wiki Activity

JIST: Java Image Science Toolkit wiki

CommandLineInterface posted by Bennett Landman on Apr 13

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JIST process manager does not recognize and execute more than 1 experiment posted by Bennett Landman on Apr 13

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How to embed surface thickness from CRUISE output? posted by Bennett Landman on Apr 13

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How to commit new JIST plugins to source codebase? posted by Bennett Landman on Apr 13

News Activity

Tool & Resource news

Access Private Amazon Clouds with JIST – Powered by NITRC-CE posted by Bennett Landman on Feb 26

Forum Activity

open-discussion forum

The layout file does not work. posted by Seongjin Choi on Feb 25