CBS High-Res Brain Processing Tools

With 7 Tesla MRI, neuroscientists can investigate the structure of the human brain with enhanced resolution, currently up to 350µm isotropic in vivo. Quantitative MR contrasts and increased level of detail within tissues reveal many fine anatomical structures, but require efficient computational methods that handle various contrasts and scale well with data complexity.

The CBS High-Res Brain Processing Tools provide a fully automated processing pipeline for cortical analysis of structural MR images at a resolution of up to 400µm, including skull stripping, whole brain segmentation, cortical extraction, surface inflation and mapping, as well as dedicated tools for profile estimation across the cortical thickness.

The tools are released as a set of plug-ins for the MIPAV software package and the JIST pipeline environment. They are therefore cross-platform and compatible with a wide variety of file formats.
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Specifications

License:Freeware
Domain:MR

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cbstools in python: CBS Tools in Python 3.1.0 release

cbstoolsjcc-python-3.1.0d170410.tar.gz posted by Pierre-Louis Bazin on Apr 10

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cbs-tools: CBS Tools 3.1.0 release

cbstools-rel3.1.0-170410.jar posted by Pierre-Louis Bazin on Apr 10

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RE: CBS tools help on mac 10.10.3 posted by Thomas Ernst on Jan 27

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RE: Installation Problems posted by Ian Greenhouse on Jan 19

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validation data: QSM venography delineations release

validation data posted by Pierre-Louis Bazin on Jul 21, 2016

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cbs-tools: CBS Tools 3.0.9 release

CBSTools-release-3.0.9-160708.jar posted by Pierre-Louis Bazin on Jul 8, 2016

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RE: Installation Problems posted by Maggie Mae Mell on Mar 22, 2016

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RE: Installation Problems posted by Maggie Mae Mell on Mar 22, 2016

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RE: Installation Problems posted by Pierre-Louis Bazin on Mar 22, 2016

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Installation Problems posted by Maggie Mae Mell on Mar 9, 2016