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Workshop Reports
Description: INCF Workshops deal with selected problems, including technical issues of primary importance for neuroinformatics, or research topics related to neuroscience databasing, tool development, or modeling of nervous system function.
PubMed Mentions ( 47 )+
Digital atlases as a framework for data sharing.
Description: Boline, Jyl, et al. Digital atlases as a framework for data sharing. ''Front Neurosci''. 2008 Jul; '''2''' (1):100-6
Updated: Sep 21, 2019
Sharing with python.
Description: Einevoll, Gaute T. Sharing with python. ''Front Neurosci''. 2009; '''3''' (3):334-5
Updated: Sep 21, 2019
Shifting the paradigm: new approaches for characterizing and classifying neurons.
Description: Bernard, Amy, et al. Shifting the paradigm: new approaches for characterizing and classifying neurons. ''Curr Opin Neurobiol''. 2009 Oct; '''19''' (5):530-6
Updated: Sep 21, 2019
Application of neuroanatomical ontologies for neuroimaging data annotation.
Description: Turner, Jessica A, et al. Application of neuroanatomical ontologies for neuroimaging data annotation. ''Front Neuroinform''. 2010; '''4''':
Updated: Sep 21, 2019
NeuronBank: A Tool for Cataloging Neuronal Circuitry.
Description: Katz, Paul S, et al. NeuronBank: A Tool for Cataloging Neuronal Circuitry. ''Front Syst Neurosci''. 2010; '''4''': 9
Updated: Sep 21, 2019
Technical and organizational considerations for the long-term maintenance and development of digital brain atlases and web-based databases.
Description: Ito, Kei. Technical and organizational considerations for the long-term maintenance and development of digital brain atlases and web-based databases. ''Front Syst Neurosci''. 2010; '''4''': 26
Updated: Sep 21, 2019
Toward integration of biological and physiological functions at multiple levels.
Description: Nomura, Taishin. Toward integration of biological and physiological functions at multiple levels. ''Front Physiol''. 2010; '''1''': 164
Updated: Sep 21, 2019
Microscopic diffusion tensor imaging of the mouse brain.
Description: Jiang, Yi, et al. Microscopic diffusion tensor imaging of the mouse brain. ''Neuroimage''. 2010 Apr 1; '''50''' (2):465-71
Updated: Oct 12, 2019
Waxholm space: an image-based reference for coordinating mouse brain research.
Description: Johnson, G Allan, et al. Waxholm space: an image-based reference for coordinating mouse brain research. ''Neuroimage''. 2010 Nov 1; '''53''' (2):365-72
Updated: Sep 21, 2019
MR connectomics: Principles and challenges.
Description: Hagmann, Patric, et al. MR connectomics: Principles and challenges. ''J Neurosci Methods''. 2010 Dec 15; '''194''' (1):34-45
Updated: Oct 12, 2019
Would the field of cognitive neuroscience be advanced by sharing functional MRI data?
Description: Visscher, Kristina M, et al. Would the field of cognitive neuroscience be advanced by sharing functional MRI data? ''BMC Med''. 2011 Apr 8; '''9''': 34
Updated: Sep 21, 2019
Small brain, big science.
Description: Gross, Michael. Small brain, big science. ''Curr Biol''. 2011 Dec 6; '''21''' (23):R935-7
Updated: Oct 12, 2019
CoCoMac 2.0 and the future of tract-tracing databases.
Description: Bakker, Rembrandt, et al. CoCoMac 2.0 and the future of tract-tracing databases. ''Front Neuroinform''. 2012; '''6''': 30
Updated: Sep 21, 2019
Data sharing in neuroimaging research.
Description: Poline, Jean-Baptiste, et al. Data sharing in neuroimaging research. ''Front Neuroinform''. 2012; '''6''': 9
Updated: Sep 21, 2019
Development and use of Ontologies Inside the Neuroscience Information Framework: A Practical Approach.
Description: Imam, Fahim T, et al. Development and use of Ontologies Inside the Neuroscience Information Framework: A Practical Approach. ''Front Genet''. 2012; '''3''': 111
Updated: Sep 21, 2019
Towards reliable spike-train recordings from thousands of neurons with multielectrodes.
Description: Einevoll, Gaute T, et al. Towards reliable spike-train recordings from thousands of neurons with multielectrodes. ''Curr Opin Neurobiol''. 2012 Feb; '''22''' (1):11-7
Updated: Oct 12, 2019
Why shared data should not be acknowledged on the author byline.
Description: Rohlfing, T, et al. Why shared data should not be acknowledged on the author byline. ''Neuroimage''. 2012 Feb 15; '''59''' (4):4189-95
Updated: Sep 21, 2019
Web tools for large-scale 3D biological images and atlases.
Description: Husz, Zsolt L, et al. Web tools for large-scale 3D biological images and atlases. ''BMC Bioinformatics''. 2012 Jun 7; '''13''': 122
Updated: Sep 21, 2019
Data sharing and publishing in the field of neuroimaging.
Description: Breeze, Janis L, et al. Data sharing and publishing in the field of neuroimaging. ''Gigascience''. 2012 Jul 12; '''1''' (1):9
Updated: Sep 21, 2019
A multidimensional magnetic resonance histology atlas of the Wistar rat brain.
Description: Johnson, G Allan, et al. A multidimensional magnetic resonance histology atlas of the Wistar rat brain. ''Neuroimage''. 2012 Sep; '''62''' (3):1848-56
Updated: Oct 12, 2019
ACQ4: an open-source software platform for data acquisition and analysis in neurophysiology research.
Description: Campagnola, Luke, et al. ACQ4: an open-source software platform for data acquisition and analysis in neurophysiology research. ''Front Neuroinform''. 2014; '''8''': 3
Updated: Sep 21, 2019
A multi-resource data integration approach: identification of candidate genes regulating cell proliferation during neocortical development.
Description: Vied, Cynthia M, et al. A multi-resource data integration approach: identification of candidate genes regulating cell proliferation during neocortical development. ''Front Neurosci''. 2014; '''8''': 257
Updated: Sep 21, 2019
A simple tool for neuroimaging data sharing.
Description: Haselgrove, Christian, et al. A simple tool for neuroimaging data sharing. ''Front Neuroinform''. 2014; '''8''': 52
Updated: Sep 21, 2019
Comparative analysis of knowledge representation and reasoning requirements across a range of life sciences textbooks.
Description: Chaudhri, Vinay K, et al. Comparative analysis of knowledge representation and reasoning requirements across a range of life sciences textbooks. ''J Biomed Semantics''. 2014; '''5''': 51
Updated: Sep 21, 2019
High-throughput neuroimaging-genetics computational infrastructure.
Description: Dinov, Ivo D, et al. High-throughput neuroimaging-genetics computational infrastructure. ''Front Neuroinform''. 2014; '''8''': 41
Updated: Sep 21, 2019
Integrated platform and API for electrophysiological data.
Description: Sobolev, Andrey, et al. Integrated platform and API for electrophysiological data. ''Front Neuroinform''. 2014; '''8''': 32
Updated: Sep 21, 2019
Neuroinformatic analyses of common and distinct genetic components associated with major neuropsychiatric disorders.
Description: Lotan, Amit, et al. Neuroinformatic analyses of common and distinct genetic components associated with major neuropsychiatric disorders. ''Front Neurosci''. 2014; '''8''': 331
Updated: Sep 21, 2019
QSpike tools: a generic framework for parallel batch preprocessing of extracellular neuronal signals recorded by substrate microelectrode arrays.
Description: Mahmud, Mufti, et al. QSpike tools: a generic framework for parallel batch preprocessing of extracellular neuronal signals recorded by substrate microelectrode arrays. ''Front Neuroinform''. 2014; '''8''': 26
Updated: Sep 21, 2019
Neuroanatomical domain of the foundational model of anatomy ontology.
Description: Nichols, B Nolan, et al. Neuroanatomical domain of the foundational model of anatomy ontology. ''J Biomed Semantics''. 2014 Jan 8; '''5''' (1):1
Updated: Sep 21, 2019
Automatic target validation based on neuroscientific literature mining for tractography.
Description: Vasques, Xavier, et al. Automatic target validation based on neuroscientific literature mining for tractography. ''Front Neuroanat''. 2015; '''9''': 66
Updated: Sep 21, 2019
Neuroart: picturing the neuroscience of intentional actions in art and science.
Description: Siler, Todd. Neuroart: picturing the neuroscience of intentional actions in art and science. ''Front Hum Neurosci''. 2015; '''9''': 410
Updated: Sep 21, 2019
The Resource Identification Initiative: A cultural shift in publishing.
Description: Bandrowski, Anita, et al. The Resource Identification Initiative: A cultural shift in publishing. ''F1000Res''. 2015; '''4''': 134
Updated: Sep 21, 2019
Multimodal neuroimaging computing: the workflows, methods, and platforms.
Description: Liu, Sidong, et al. Multimodal neuroimaging computing: the workflows, methods, and platforms. ''Brain Inform''. 2015 Sep; '''2''' (3):181-195
Updated: Sep 21, 2019
The preclinical data forum network: A new ECNP initiative to improve data quality and robustness for (preclinical) neuroscience.
Description: Steckler, Thomas, et al. The preclinical data forum network: A new ECNP initiative to improve data quality and robustness for (preclinical) neuroscience. ''Eur Neuropsychopharmacol''. 2015 Oct; '''25''' (10):1803-7
Updated: Oct 12, 2019
Exploring fMRI Results Space: 31 Variants of an fMRI Analysis in AFNI, FSL, and SPM.
Description: Pauli, Ruth, et al. Exploring fMRI Results Space: 31 Variants of an fMRI Analysis in AFNI, FSL, and SPM. ''Front Neuroinform''. 2016; '''10''': 24
Updated: Sep 21, 2019
Processing and Analysis of Multichannel Extracellular Neuronal Signals: State-of-the-Art and Challenges.
Description: Mahmud, Mufti, et al. Processing and Analysis of Multichannel Extracellular Neuronal Signals: State-of-the-Art and Challenges. ''Front Neurosci''. 2016; '''10''': 248
Updated: Sep 21, 2019
SchizConnect: Mediating neuroimaging databases on schizophrenia and related disorders for large-scale integration.
Description: Wang, Lei, et al. SchizConnect: Mediating neuroimaging databases on schizophrenia and related disorders for large-scale integration. ''Neuroimage''. 2016 Jan 1; '''124''' (Pt B):1155-1167
Updated: Sep 21, 2019
The genetics and neurobiology of ESSENCE: The third Birgit Olsson lecture.
Description: Bourgeron, Thomas. The genetics and neurobiology of ESSENCE: The third Birgit Olsson lecture. ''Nord J Psychiatry''. 2016; '''70''' (1):1-9
Updated: Sep 21, 2019
The Resource Identification Initiative: a cultural shift in publishing.
Description: Bandrowski, Anita, et al. The Resource Identification Initiative: a cultural shift in publishing. ''Brain Behav''. 2016 Jan; '''6''' (1):e00417
Updated: Sep 21, 2019
The Resource Identification Initiative: A Cultural Shift in Publishing.
Description: Bandrowski, Anita, et al. The Resource Identification Initiative: A Cultural Shift in Publishing. ''J Comp Neurol''. 2016 Jan 1; '''524''' (1):8-22
Updated: Sep 21, 2019
The primate connectome in context: Principles of connections of the cortical visual system.
Description: Hilgetag, Claus C, et al. The primate connectome in context: Principles of connections of the cortical visual system. ''Neuroimage''. 2016 Jul 1; '''134''': 685-702
Updated: Oct 12, 2019
Connecting the Brain to Itself through an Emulation.
Description: Serruya, Mijail D. Connecting the Brain to Itself through an Emulation. ''Front Neurosci''. 2017; '''11''': 373
Updated: Sep 21, 2019
Functional outcome, in-hospital healthcare consumption and in-hospital costs for hospitalised traumatic brain injury patients: a Dutch prospective multicentre study.
Description: van Dijck, Jeroen T J M, et al. Functional outcome, in-hospital healthcare consumption and in-hospital costs for hospitalised traumatic brain injury patients: a Dutch prospective multicentre study. ''Acta Neurochir (Wien)''. 2020 Jul; '''162''' (7):1607-1618
Updated: Jul 18, 2020
A Standards Organization for Open and FAIR Neuroscience: the International Neuroinformatics Coordinating Facility.
Description: Abrams, Mathew Birdsall, et al. A Standards Organization for Open and FAIR Neuroscience: the International Neuroinformatics Coordinating Facility. ''Neuroinformatics''. 2021 Jan 27;
Updated: Aug 20, 2022
Brain Temperature Influences Intracranial Pressure and Cerebral Perfusion Pressure After Traumatic Brain Injury: A CENTER-TBI Study.
Description: Birg, Tatiana, et al. Brain Temperature Influences Intracranial Pressure and Cerebral Perfusion Pressure After Traumatic Brain Injury: A CENTER-TBI Study. ''Neurocrit Care''. 2021 Dec; '''35''' (3):651-661
Updated: Feb 12, 2022
Intracranial electrophysiological recordings from the human brain during memory tasks with pupillometry.
Description: Cimbalnik, Jan, et al. Intracranial electrophysiological recordings from the human brain during memory tasks with pupillometry. ''Sci Data''. 2022 Jan 13; '''9''' (1):6
Updated: Feb 12, 2022
Is Neuroscience FAIR? A Call for Collaborative Standardisation of Neuroscience Data.
Description: Poline, Jean-Baptiste, et al. Is Neuroscience FAIR? A Call for Collaborative Standardisation of Neuroscience Data. ''Neuroinformatics''. 2022 Apr; '''20''' (2):507-512
Updated: Oct 22, 2022