Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
880412
2
Nilearn
527735
3
ITK-SNAP
419536
4
FCP/INDI PRIVATE SITE
298386
5
1000 Functional Connectomes Project
173235
6
IIT Human Brain Atlas (v.5.0)
159045
7
MRIcroGL
158292
8
CONN : functional connectivity toolbox
153922
9
fMRI-CPCA
96231
10
DTI-TK
89345
11
BrainNet Viewer
89297
12
BIDScoin
77224
13
IBSR
72976
14
Multi-Modal MRI Reproducibility Resource
62373
15
BioImage Suite
62310
16
WFU_PickAtlas
60909
17
age-ility
51510
18
BXH/XCEDE Tools
46561
19
PANDA: a pipeline tool for diffusion MRI
42899
20
Waxholm Space Atlas of the Sprague Dawley Rat Brain
42711
21
Solar Eclipse Imaging Genetics tools
42144
22
JIST: Java Image Science Toolkit
40892
23
The Neuro Bureau
40482
24
EEGLAB
39775
25
FreeSurfer
37856
26
GIFTI
37259
27
TOADS-CRUISE Brain Segmentation Tools
36514
28
fNIRS Data Analysis Environment
34544
29
Functional Imaging BIRN
34433
30
Generalized PPI Toolbox
31710
31
NIDB - Neuroinformatics Database
31589
32
3T DWI test-retest reliability dataset
31253
33
NITRC Computational Environment (NITRC-CE)
30628
34
BrainMap Database
26749
35
Homer2
24208
36
Network-Based Statistic (NBS)
22709
37
NeuroDebian
22500
38
Anima
22341
39
BrainVisa Morphologist extensions
21557
40
NYU CSC TestRetest
20857
41
UNC 0-1-2 Infant Atlases
19785
42
XNAT Extras
18545
43
Mango
17844
44
Brain Biomechanics Imaging Resources
17521
45
QuickNII - Serial section aligner to volumetric atlases
17506
46
MITK Diffusion
17455
47
Neuroimaging Made Easy Blog
16487
48
Automatic Registration Toolbox
16239
49
GRETNA
15694
50
Data Format Tools
15462
51
Surf Ice
15286
52
Melbourne Subcortex Atlas
15077
53
3D Slicer
14862
54
Vaa3D and Vaa3D-Neuron
14475
55
Talairach Daemon
14428
56
Diffusion Toolkit / TrackVis
14422
57
Spatially Constrained Parcellation
14268
58
Freesurfer fsaverage
13944
59
CBS High-Res Brain Processing Tools
13880
60
BrainFlow
13808
61
Brainstorm
13629
62
DCP：Diffusion Connectome Pipeline
13542
63
SRI24 Atlas: Normal Adult Brain Anatomy
13429
64
Group ICA Toolbox (GIFT and EEGIFT)
13229
65
BrainMask Volume Processing Tool
12740
66
dcm2nii
12711
67
Computational Morphometry Toolkit (CMTK)
12699
68
libminc - Medical Image NetCDF library
12609
69
MRtrix
12501
70
Multimodal Visual Consciousness Study Dataset
12229
71
3DSlicerLupusLesionModule
12124
72
CANDI Neuroimaging Access Point
12119
73
FSL
11917
74
BrainSuite
11834
75
Human Imaging Database (HID)
11660
76
DWI/DTI Quality Control Tool: DTIPrep
11588
77
Artifact Detection Tools (ART)
11586
78
Subject Order-Independent Group ICA
11397
79
TumorSim
11336
80
Hammer And WML Modules for 3D Slicer
11037
81
BrainVISA
11029
82
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
10918
83
2008 MICCAI MS Lesion Segmentation Challenge
10876
84
4D UNC Neonatal and Infant Cortical Surface Atlases
10777
85
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
10653
86
NeuroImaging Analysis Kit (NIAK)
10641
87
NODDI Matlab Toolbox
10112
88
SPM for fNIRS toolbox
10009
89
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
10007
90
Diffusional Kurtosis Estimator
9935
91
Source Information Flow Toolbox
9822
92
ENIGMA-DTI pipeline
9780
93
NIfTI
9724
94
NIRS-KIT: A MATLAB toolbox for both task and resting-state fNIRS data analysis
9556
95
Awake Rat rsfMRI Database
9492
96
Task Independent Fluctuations Discussion
9407
97
CBICA: Cancer Imaging Phenomics Toolkit (CaPTk)
9180
98
MARS (Multi-Atlas Robust Segmentation)
9098
99
SPHARM-PDM Toolbox
8840
100
Robust Brain Extraction (ROBEX)
8659