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Below is a list of the tools and resources that have had files downloaded directly through NITRC Read-Only. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

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Rank Tool/Resource name Downloads
  1MRIcron490246      
  2ITK-SNAP169437      
  31000 Functional Connectomes Project105656      
  4DTI-TK71311      
  5CONN : functional connectivity toolbox48284      
  6EEGLAB38295      
  7FreeSurfer36920      
  8Nilearn31656      
  9WFU_PickAtlas30542      
  10TOADS-CRUISE Brain Segmentation Tools28186      
  11DSI Studio28114      
  12Multi-Modal MRI Reproducibility Resource25844      
  13IIT Human Brain Atlas (v.4.1)21760      
  14BrainNet Viewer16951      
  15MRIcroGL16494      
  16Functional Imaging BIRN16290      
  17JIST: Java Image Science Toolkit16012      
  18IBSR15716      
  19PANDA: a pipeline tool for diffusion MRI15335      
  20The Neuro Bureau14102      
  21Generalized PPI Toolbox12926      
  22MINC - Medical Image NetCDF11284      
  23Solar Eclipse Imaging Genetics tools11098      
  24NeuroDebian11033      
  25BrainVisa Morphologist extensions10820      
  26GIFTI10730      
  273D Slicer9888      
  28Mango9685      
  29MITK Diffusion9507      
  30BioImage Suite9293      
  31BrainMap Database9042      
  32Talairach Daemon8916      
  33MRtrix8890      
  34BrainVISA8074      
  35Automatic Registration Toolbox7896      
  36fMRI-CPCA7869      
  37Neuroimaging Made Easy Blog7721      
  38Subject Order-Independent Group ICA7436      
  39Diffusion Toolkit / TrackVis7415      
  40fNIRS Data Analysis Environment6637      
  41BrainMask Volume Processing Tool6568      
  42XNAT Extras6563      
  43Artifact Detection Tools (ART)6531      
  44NYU CSC TestRetest5941      
  45Data Format Tools5876      
  46FSL5780      
  47Spatially Constrained Parcellation5771      
  483DSlicerLupusLesionModule5733      
  49Hammer And WML Modules for 3D Slicer5641      
  50Group ICA Toolbox (GIFT and EEGIFT)5481      
  51BrainVoyager5349      
  52Computational Morphometry Toolkit (CMTK)5190      
  53LONI Pipeline Environment5053      
  54Network-Based Statistic (NBS)4904      
  55SRI24 Atlas: Normal Adult Brain Anatomy4809      
  56UNC 0-1-2 Infant Atlases4808      
  57NeuroImaging Analysis Kit (NIAK)4785      
  58BrainVoyager Brain Tutor4652      
  59Source Information Flow Toolbox4383      
  60Human Imaging Database (HID)4370      
  61Center for Functional Neuroimaging Tech4208      
  62GRETNA4061      
  63SPM3930      
  64ABSORB for groupwise registration3761      
  65dcm2nii3683      
  66TumorSim3620      
  67GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity3609      
  68MATLAB Tutorial on Diffusion Tensor MRI3580      
  69FBIRN Image Processing Scripts (FIPS)3557      
  70NIfTI3557      
  71Vaa3D and Vaa3D-Neuron3528      
  72SPHARM-PDM Toolbox3407      
  73HAMMER: Deformable Registration3402      
  74BrainSuite3390      
  75MRI Defacer3313      
  76ABC (Atlas Based Classification)3205      
  772008 MICCAI MS Lesion Segmentation Challenge3177      
  78Maps4Mipav (Exploratory JIST) 3171      
  79BXH/XCEDE Tools3113      
  803T DWI test-retest reliability dataset3092      
  81FMRIpower3086      
  82REX3005      
  83CBS High-Res Brain Processing Tools2980      
  84DWI/DTI Quality Control Tool: DTIPrep2936      
  85Optseq - fMRI Event Scheduler2923      
  86CANDI Neuroimaging Access Point2888      
  87Pipeline system for Octave and Matlab2870      
  88Task Independent Fluctuations Discussion2852      
  89LONI Debabeler2800      
  90GLIRT2763      
  91DicomBrowser2604      
  92MARS (Multi-Atlas Robust Segmentation)2599      
  93iBEAT2568      
  94Licensing2526      
  95JIP fMRI Analysis Toolkit2525      
  96MIPAV2487      
  97Robust Brain Extraction (ROBEX)2438      
  98age-ility2433      
  99Homer22402      
  100XNAT2393