Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
Nilearn
1161099
2
BIDScoin
1090515
3
MRIcron
1031647
4
ITK-SNAP
481975
5
FCP/INDI PRIVATE SITE
405195
6
IIT Human Brain Atlas (v.5.0)
246657
7
CONN : functional connectivity toolbox
233986
8
MRIcroGL
215444
9
fMRI-CPCA
211314
10
1000 Functional Connectomes Project
186425
11
BrainNet Viewer
135124
12
BXH/XCEDE Tools
119084
13
NIDB - Neuroinformatics Database
110400
14
DTI-TK
100326
15
age-ility
94596
16
BioImage Suite
86815
17
IBSR
85385
18
Solar Eclipse Imaging Genetics tools
84952
19
Waxholm Space Atlas of the Sprague Dawley Rat Brain
81962
20
BrainFlow
80868
21
Multi-Modal MRI Reproducibility Resource
80353
22
JIST: Java Image Science Toolkit
79728
23
WFU_PickAtlas
67522
24
GIFTI
62757
25
NITRC Computational Environment (NITRC-CE)
60469
26
PANDA: a pipeline tool for diffusion MRI
57337
27
The Neuro Bureau
54095
28
3T DWI test-retest reliability dataset
52571
29
Functional Imaging BIRN
51537
30
Multimodal Visual Consciousness Study Dataset
50339
31
Standard Amygdalar fMRI Probe Tasks
49747
32
TOADS-CRUISE Brain Segmentation Tools
45913
33
Generalized PPI Toolbox
45852
34
QuickNII - Serial section aligner to volumetric atlases
44139
35
fNIRS Data Analysis Environment
43869
36
MIITRA atlas
40385
37
Network-Based Statistic (NBS)
40272
38
EEGLAB
40116
39
BrainMap Database
39749
40
FreeSurfer
38003
41
NeuroImaging Analysis Kit (NIAK)
37578
42
Brain Biomechanics Imaging Resources
36556
43
UNC 0-1-2 Infant Atlases
36030
44
Graph Theory GLM (GTG) MATLAB Toolbox
35091
45
DWI/DTI Quality Control Tool: DTIPrep
33400
46
Melbourne Subcortex Atlas
32681
47
TumorSim
32256
48
CBS High-Res Brain Processing Tools
32013
49
Homer2
31945
50
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
30535
51
NYU CSC TestRetest
29103
52
NeuroDebian
28875
53
Anima
28481
54
BrainVisa Morphologist extensions
28419
55
4D UNC Neonatal and Infant Cortical Surface Atlases
27728
56
XNAT Extras
27038
57
SPHARM-PDM Toolbox
25037
58
Neuroimaging Made Easy Blog
24193
59
SRI24 Atlas: Normal Adult Brain Anatomy
23632
60
BrainMask Volume Processing Tool
23474
61
CANDI Neuroimaging Access Point
22982
62
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
22834
63
ANDA
22420
64
3DSlicerLupusLesionModule
21577
65
ShapePopulationViewer
21374
66
Fast Nonlocal Means for MRI denoising
21149
67
Data Format Tools
21142
68
Vaa3D and Vaa3D-Neuron
20876
69
MRtrix
20595
70
Surf Ice
19873
71
Mango
19828
72
Group ICA Toolbox (GIFT and EEGIFT)
19779
73
Awake Rat rsfMRI Database
19550
74
Automatic Registration Toolbox
19322
75
Hammer And WML Modules for 3D Slicer
19154
76
Multi-site Frequency Drift MR Spectroscopy
18996
77
AutoSeg
18751
78
MITK Diffusion
18630
79
Subject Order-Independent Group ICA
18248
80
NeuroDOT
18084
81
GRETNA
18023
82
Talairach Daemon
17972
83
Human Imaging Database (HID)
17918
84
DCP：Diffusion Connectome Pipeline
17681
85
ENIGMA-DTI pipeline
17504
86
Freesurfer fsaverage
17366
87
Diffusion Toolkit / TrackVis
17363
88
BrainSuite
17272
89
resting-state fMRI of patients with pre-eclampsia and healthy pregnant women
17086
90
3D Slicer
17080
91
Spatially Constrained Parcellation
17062
92
Computational Morphometry Toolkit (CMTK)
16988
93
MARS (Multi-Atlas Robust Segmentation)
16150
94
ReproNim: A Center for Reproducible Neuroimaging Computation
16078
95
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
15914
96
FSL
14964
97
3DMeshMetric
14910
98
Maps4Mipav (Exploratory JIST)
14869
99
Nutil - Neuroimaging utilities
14432
100
Artifact Detection Tools (ART)
14337