Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
873962
2
Nilearn
515599
3
ITK-SNAP
416509
4
FCP/INDI PRIVATE SITE
293031
5
1000 Functional Connectomes Project
172698
6
IIT Human Brain Atlas (v.5.0)
156827
7
MRIcroGL
155098
8
CONN : functional connectivity toolbox
151653
9
fMRI-CPCA
95730
10
DTI-TK
88971
11
BrainNet Viewer
87567
12
IBSR
72223
13
BIDScoin
63149
14
Multi-Modal MRI Reproducibility Resource
61573
15
WFU_PickAtlas
60250
16
BioImage Suite
59390
17
age-ility
50216
18
BXH/XCEDE Tools
46144
19
PANDA: a pipeline tool for diffusion MRI
42413
20
Solar Eclipse Imaging Genetics tools
41473
21
Waxholm Space Atlas of the Sprague Dawley Rat Brain
41319
22
JIST: Java Image Science Toolkit
40072
23
EEGLAB
39754
24
The Neuro Bureau
39715
25
FreeSurfer
37849
26
GIFTI
36647
27
TOADS-CRUISE Brain Segmentation Tools
36363
28
fNIRS Data Analysis Environment
34131
29
Functional Imaging BIRN
34007
30
Generalized PPI Toolbox
31411
31
3T DWI test-retest reliability dataset
30327
32
NITRC Computational Environment (NITRC-CE)
30122
33
NIDB - Neuroinformatics Database
29669
34
BrainMap Database
26330
35
Homer2
23899
36
NeuroDebian
22267
37
Network-Based Statistic (NBS)
22214
38
Anima
21907
39
BrainVisa Morphologist extensions
21320
40
NYU CSC TestRetest
20454
41
UNC 0-1-2 Infant Atlases
19392
42
XNAT Extras
18249
43
Mango
17718
44
MITK Diffusion
17381
45
Brain Biomechanics Imaging Resources
16520
46
QuickNII - Serial section aligner to volumetric atlases
16484
47
Neuroimaging Made Easy Blog
16331
48
Automatic Registration Toolbox
16031
49
GRETNA
15542
50
Data Format Tools
15257
51
Surf Ice
14990
52
3D Slicer
14766
53
Talairach Daemon
14312
54
Melbourne Subcortex Atlas
14279
55
Diffusion Toolkit / TrackVis
14251
56
Vaa3D and Vaa3D-Neuron
14227
57
Spatially Constrained Parcellation
14137
58
Freesurfer fsaverage
13924
59
Brainstorm
13594
60
CBS High-Res Brain Processing Tools
13579
61
DCP：Diffusion Connectome Pipeline
13353
62
SRI24 Atlas: Normal Adult Brain Anatomy
13278
63
Group ICA Toolbox (GIFT and EEGIFT)
13015
64
dcm2nii
12670
65
libminc - Medical Image NetCDF library
12588
66
BrainMask Volume Processing Tool
12509
67
MRtrix
12431
68
Computational Morphometry Toolkit (CMTK)
12400
69
3DSlicerLupusLesionModule
11940
70
FSL
11811
71
CANDI Neuroimaging Access Point
11799
72
BrainSuite
11630
73
Artifact Detection Tools (ART)
11506
74
Human Imaging Database (HID)
11466
75
DWI/DTI Quality Control Tool: DTIPrep
11444
76
Subject Order-Independent Group ICA
11287
77
Multimodal Visual Consciousness Study Dataset
11255
78
TumorSim
11179
79
BrainFlow
11003
80
BrainVISA
10971
81
Hammer And WML Modules for 3D Slicer
10909
82
2008 MICCAI MS Lesion Segmentation Challenge
10866
83
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
10608
84
NeuroImaging Analysis Kit (NIAK)
10512
85
4D UNC Neonatal and Infant Cortical Surface Atlases
10410
86
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
10064
87
NODDI Matlab Toolbox
10027
88
SPM for fNIRS toolbox
9950
89
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
9855
90
Source Information Flow Toolbox
9772
91
Diffusional Kurtosis Estimator
9766
92
ENIGMA-DTI pipeline
9554
93
NIfTI
9522
94
NIRS-KIT: A MATLAB toolbox for both task and resting-state fNIRS data analysis
9477
95
Task Independent Fluctuations Discussion
9258
96
Awake Rat rsfMRI Database
9169
97
CBICA: Cancer Imaging Phenomics Toolkit (CaPTk)
9113
98
MARS (Multi-Atlas Robust Segmentation)
8948
99
SPHARM-PDM Toolbox
8731
100
Robust Brain Extraction (ROBEX)
8522