Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
BIDScoin
1362538
2
Nilearn
1258378
3
MRIcron
1050845
4
ITK-SNAP
489952
5
FCP/INDI PRIVATE SITE
415801
6
IIT Human Brain Atlas (v.5.0)
269661
7
CONN : functional connectivity toolbox
251915
8
MRIcroGL
220847
9
fMRI-CPCA
215933
10
1000 Functional Connectomes Project
187601
11
BrainNet Viewer
146053
12
BXH/XCEDE Tools
138813
13
NIDB - Neuroinformatics Database
126106
14
age-ility
116114
15
DTI-TK
101983
16
BioImage Suite
100237
17
Solar Eclipse Imaging Genetics tools
95116
18
BrainFlow
93148
19
JIST: Java Image Science Toolkit
93136
20
Waxholm Space Atlas of the Sprague Dawley Rat Brain
89069
21
IBSR
87003
22
Multi-Modal MRI Reproducibility Resource
83431
23
GIFTI
68618
24
NITRC Computational Environment (NITRC-CE)
68081
25
WFU_PickAtlas
67902
26
PANDA: a pipeline tool for diffusion MRI
59676
27
Multimodal Visual Consciousness Study Dataset
57516
28
3T DWI test-retest reliability dataset
55669
29
The Neuro Bureau
55613
30
Standard Amygdalar fMRI Probe Tasks
55319
31
Functional Imaging BIRN
54537
32
QuickNII - Serial section aligner to volumetric atlases
50545
33
TOADS-CRUISE Brain Segmentation Tools
49308
34
Generalized PPI Toolbox
48223
35
MIITRA atlas
46209
36
fNIRS Data Analysis Environment
45473
37
BrainMap Database
44620
38
Melbourne Subcortex Atlas
44344
39
Network-Based Statistic (NBS)
41644
40
NeuroImaging Analysis Kit (NIAK)
41374
41
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
41267
42
Brain Biomechanics Imaging Resources
40492
43
DWI/DTI Quality Control Tool: DTIPrep
40158
44
EEGLAB
40131
45
UNC 0-1-2 Infant Atlases
39023
46
Graph Theory GLM (GTG) MATLAB Toolbox
38801
47
CBS High-Res Brain Processing Tools
38219
48
FreeSurfer
38008
49
TumorSim
36153
50
Homer2
33285
51
4D UNC Neonatal and Infant Cortical Surface Atlases
32441
52
NYU CSC TestRetest
31373
53
NeuroDebian
29775
54
BrainVisa Morphologist extensions
29680
55
SPHARM-PDM Toolbox
29582
56
Anima
29374
57
XNAT Extras
28569
58
ANDA
27809
59
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
26004
60
SRI24 Atlas: Normal Adult Brain Anatomy
25981
61
BrainMask Volume Processing Tool
25967
62
CANDI Neuroimaging Access Point
25924
63
Neuroimaging Made Easy Blog
25691
64
Multi-site Frequency Drift MR Spectroscopy
25625
65
ShapePopulationViewer
25052
66
3DSlicerLupusLesionModule
24386
67
AutoSeg
23912
68
resting-state fMRI of patients with pre-eclampsia and healthy pregnant women
23344
69
MRtrix
22881
70
Fast Nonlocal Means for MRI denoising
22141
71
Data Format Tools
22067
72
Vaa3D and Vaa3D-Neuron
21976
73
Awake Rat rsfMRI Database
21860
74
NeuroDOT
21799
75
Group ICA Toolbox (GIFT and EEGIFT)
20786
76
Hammer And WML Modules for 3D Slicer
20733
77
Surf Ice
20232
78
Mango
20066
79
Automatic Registration Toolbox
19790
80
Human Imaging Database (HID)
19353
81
Talairach Daemon
19023
82
Subject Order-Independent Group ICA
18940
83
ENIGMA-DTI pipeline
18792
84
MITK Diffusion
18790
85
3D Slicer
18622
86
ReproNim: A Center for Reproducible Neuroimaging Computation
18461
87
Freesurfer fsaverage
18402
88
Computational Morphometry Toolkit (CMTK)
18351
89
3DMeshMetric
18328
90
GRETNA
18173
91
DCP：Diffusion Connectome Pipeline
18124
92
BrainSuite
18099
93
Diffusion Toolkit / TrackVis
17750
94
MARS (Multi-Atlas Robust Segmentation)
17692
95
Automatic Extra-Axial Cerebrospinal Fluid (Auto EACSF)
17662
96
Spatially Constrained Parcellation
17437
97
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
17101
98
Neurosynth Compose
16768
99
Maps4Mipav (Exploratory JIST)
16735
100
JIP fMRI Analysis Toolkit
16340