Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

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Rank
Tool/Resource name
Downloads
1
BIDScoin
1364532
2
Nilearn
1259578
3
MRIcron
1050986
4
ITK-SNAP
490079
5
FCP/INDI PRIVATE SITE
416005
6
IIT Human Brain Atlas (v.5.0)
269708
7
CONN : functional connectivity toolbox
252642
8
MRIcroGL
220885
9
fMRI-CPCA
215980
10
1000 Functional Connectomes Project
187615
11
BrainNet Viewer
146152
12
BXH/XCEDE Tools
138956
13
NIDB - Neuroinformatics Database
126265
14
age-ility
116256
15
DTI-TK
102003
16
BioImage Suite
100431
17
Solar Eclipse Imaging Genetics tools
95219
18
JIST: Java Image Science Toolkit
93406
19
BrainFlow
93241
20
Waxholm Space Atlas of the Sprague Dawley Rat Brain
89110
21
IBSR
87018
22
Multi-Modal MRI Reproducibility Resource
83479
23
GIFTI
68687
24
NITRC Computational Environment (NITRC-CE)
68177
25
WFU_PickAtlas
67909
26
PANDA: a pipeline tool for diffusion MRI
59712
27
Multimodal Visual Consciousness Study Dataset
57648
28
3T DWI test-retest reliability dataset
55734
29
The Neuro Bureau
55636
30
Standard Amygdalar fMRI Probe Tasks
55350
31
Functional Imaging BIRN
54571
32
QuickNII - Serial section aligner to volumetric atlases
50598
33
TOADS-CRUISE Brain Segmentation Tools
49373
34
Generalized PPI Toolbox
48256
35
MIITRA atlas
46236
36
fNIRS Data Analysis Environment
45494
37
BrainMap Database
44761
38
Melbourne Subcortex Atlas
44493
39
Network-Based Statistic (NBS)
41664
40
NeuroImaging Analysis Kit (NIAK)
41448
41
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
41337
42
Brain Biomechanics Imaging Resources
40511
43
DWI/DTI Quality Control Tool: DTIPrep
40206
44
EEGLAB
40132
45
UNC 0-1-2 Infant Atlases
39051
46
Graph Theory GLM (GTG) MATLAB Toolbox
38834
47
CBS High-Res Brain Processing Tools
38330
48
FreeSurfer
38008
49
TumorSim
36186
50
Homer2
33297
51
4D UNC Neonatal and Infant Cortical Surface Atlases
32497
52
NYU CSC TestRetest
31411
53
NeuroDebian
29785
54
BrainVisa Morphologist extensions
29696
55
SPHARM-PDM Toolbox
29625
56
Anima
29380
57
XNAT Extras
28591
58
ANDA
27833
59
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
26054
60
SRI24 Atlas: Normal Adult Brain Anatomy
26008
61
BrainMask Volume Processing Tool
25988
62
CANDI Neuroimaging Access Point
25939
63
Neuroimaging Made Easy Blog
25716
64
Multi-site Frequency Drift MR Spectroscopy
25700
65
ShapePopulationViewer
25072
66
3DSlicerLupusLesionModule
24420
67
AutoSeg
23964
68
resting-state fMRI of patients with pre-eclampsia and healthy pregnant women
23413
69
MRtrix
22899
70
Fast Nonlocal Means for MRI denoising
22156
71
Data Format Tools
22078
72
Vaa3D and Vaa3D-Neuron
21992
73
Awake Rat rsfMRI Database
21906
74
NeuroDOT
21824
75
Group ICA Toolbox (GIFT and EEGIFT)
20791
76
Hammer And WML Modules for 3D Slicer
20753
77
Surf Ice
20234
78
Mango
20070
79
Automatic Registration Toolbox
19795
80
Human Imaging Database (HID)
19366
81
Talairach Daemon
19051
82
Subject Order-Independent Group ICA
18955
83
ENIGMA-DTI pipeline
18810
84
MITK Diffusion
18792
85
3D Slicer
18625
86
ReproNim: A Center for Reproducible Neuroimaging Computation
18471
87
Freesurfer fsaverage
18428
88
Computational Morphometry Toolkit (CMTK)
18359
89
3DMeshMetric
18359
90
GRETNA
18180
91
DCP：Diffusion Connectome Pipeline
18130
92
BrainSuite
18109
93
Diffusion Toolkit / TrackVis
17756
94
MARS (Multi-Atlas Robust Segmentation)
17717
95
Automatic Extra-Axial Cerebrospinal Fluid (Auto EACSF)
17707
96
Spatially Constrained Parcellation
17444
97
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
17116
98
Neurosynth Compose
16807
99
Maps4Mipav (Exploratory JIST)
16747
100
JIP fMRI Analysis Toolkit
16368