Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
837751
2
Nilearn
454118
3
ITK-SNAP
399918
4
FCP/INDI PRIVATE SITE
260056
5
1000 Functional Connectomes Project
169285
6
IIT Human Brain Atlas (v.5.0)
141045
7
CONN : functional connectivity toolbox
139807
8
MRIcroGL
135711
9
DTI-TK
86845
10
BrainNet Viewer
78359
11
IBSR
68442
12
Multi-Modal MRI Reproducibility Resource
56888
13
WFU_PickAtlas
56800
14
age-ility
44705
15
BioImage Suite
43356
16
BXH/XCEDE Tools
41985
17
EEGLAB
39538
18
PANDA: a pipeline tool for diffusion MRI
39429
19
FreeSurfer
37838
20
Solar Eclipse Imaging Genetics tools
36958
21
JIST: Java Image Science Toolkit
36451
22
The Neuro Bureau
36315
23
TOADS-CRUISE Brain Segmentation Tools
35582
24
Waxholm Space Atlas of the Sprague Dawley Rat Brain
34413
25
GIFTI
32917
26
fNIRS Data Analysis Environment
31255
27
Functional Imaging BIRN
31182
28
Generalized PPI Toolbox
29415
29
NITRC Computational Environment (NITRC-CE)
26743
30
3T DWI test-retest reliability dataset
25856
31
BrainMap Database
24021
32
Homer2
21914
33
NeuroDebian
20413
34
BrainVisa Morphologist extensions
19591
35
Anima
19522
36
fMRI-CPCA
19406
37
Network-Based Statistic (NBS)
19404
38
NIDB - Neuroinformatics Database
18778
39
NYU CSC TestRetest
18757
40
UNC 0-1-2 Infant Atlases
16999
41
Mango
16997
42
MITK Diffusion
16788
43
XNAT Extras
15897
44
Neuroimaging Made Easy Blog
15708
45
Automatic Registration Toolbox
14906
46
GRETNA
14514
47
3D Slicer
14142
48
Freesurfer fsaverage
13818
49
Data Format Tools
13544
50
Brainstorm
13396
51
Talairach Daemon
13375
52
Spatially Constrained Parcellation
13327
53
Surf Ice
13298
54
Diffusion Toolkit / TrackVis
13148
55
Vaa3D and Vaa3D-Neuron
12636
56
libminc - Medical Image NetCDF library
12431
57
dcm2nii
12386
58
SRI24 Atlas: Normal Adult Brain Anatomy
12069
59
MRtrix
12006
60
DCP：Diffusion Connectome Pipeline
11964
61
QuickNII - Serial section aligner to volumetric atlases
11878
62
CBS High-Res Brain Processing Tools
11775
63
Group ICA Toolbox (GIFT and EEGIFT)
11729
64
BrainMask Volume Processing Tool
11168
65
Artifact Detection Tools (ART)
11121
66
Brain Biomechanics Imaging Resources
11096
67
Computational Morphometry Toolkit (CMTK)
11064
68
FSL
10958
69
3DSlicerLupusLesionModule
10794
70
Subject Order-Independent Group ICA
10614
71
2008 MICCAI MS Lesion Segmentation Challenge
10586
72
DWI/DTI Quality Control Tool: DTIPrep
10558
73
BrainVISA
10557
74
TumorSim
10482
75
CANDI Neuroimaging Access Point
10438
76
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
10183
77
Human Imaging Database (HID)
10119
78
BrainSuite
10089
79
Hammer And WML Modules for 3D Slicer
9966
80
NeuroImaging Analysis Kit (NIAK)
9835
81
Melbourne Subcortex Atlas
9558
82
Source Information Flow Toolbox
9522
83
NODDI Matlab Toolbox
9333
84
Diffusional Kurtosis Estimator
9273
85
SPM for fNIRS toolbox
9270
86
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
8700
87
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
8654
88
NIfTI
8651
89
CBICA: Cancer Imaging Phenomics Toolkit (CaPTk)
8615
90
SPHARM-PDM Toolbox
8207
91
4D UNC Neonatal and Infant Cortical Surface Atlases
8165
92
ENIGMA-DTI pipeline
8077
93
Task Independent Fluctuations Discussion
7923
94
Robust Brain Extraction (ROBEX)
7850
95
NIRS-KIT: A MATLAB toolbox for both task and resting-state fNIRS data analysis
7767
96
MARS (Multi-Atlas Robust Segmentation)
7702
97
iBEAT
7654
98
BrainVoyager Brain Tutor
7387
99
SPM
7367
100
Center for Functional Neuroimaging Tech
7362