Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
971803
2
Nilearn
958348
3
BIDScoin
663604
4
ITK-SNAP
465467
5
FCP/INDI PRIVATE SITE
381314
6
IIT Human Brain Atlas (v.5.0)
221320
7
fMRI-CPCA
206452
8
MRIcroGL
203670
9
CONN : functional connectivity toolbox
200531
10
1000 Functional Connectomes Project
183472
11
BrainNet Viewer
118039
12
DTI-TK
96586
13
BXH/XCEDE Tools
86412
14
NIDB - Neuroinformatics Database
82848
15
IBSR
81751
16
BioImage Suite
79758
17
age-ility
79155
18
Multi-Modal MRI Reproducibility Resource
75691
19
Waxholm Space Atlas of the Sprague Dawley Rat Brain
71207
20
Solar Eclipse Imaging Genetics tools
66656
21
WFU_PickAtlas
66487
22
JIST: Java Image Science Toolkit
64362
23
BrainFlow
60637
24
GIFTI
53039
25
PANDA: a pipeline tool for diffusion MRI
52512
26
The Neuro Bureau
50696
27
NITRC Computational Environment (NITRC-CE)
50241
28
3T DWI test-retest reliability dataset
46473
29
Functional Imaging BIRN
46423
30
TOADS-CRUISE Brain Segmentation Tools
41697
31
fNIRS Data Analysis Environment
41361
32
EEGLAB
40063
33
Multimodal Visual Consciousness Study Dataset
38697
34
Generalized PPI Toolbox
38553
35
FreeSurfer
37987
36
BrainMap Database
35951
37
QuickNII - Serial section aligner to volumetric atlases
35924
38
Network-Based Statistic (NBS)
34043
39
MIITRA atlas
32503
40
NeuroImaging Analysis Kit (NIAK)
31955
41
UNC 0-1-2 Infant Atlases
31059
42
Brain Biomechanics Imaging Resources
29560
43
Homer2
29172
44
NeuroDebian
27006
45
Anima
26665
46
DWI/DTI Quality Control Tool: DTIPrep
26625
47
NYU CSC TestRetest
26320
48
TumorSim
26319
49
BrainVisa Morphologist extensions
26299
50
XNAT Extras
24503
51
Graph Theory GLM (GTG) MATLAB Toolbox
24452
52
CBS High-Res Brain Processing Tools
22782
53
Melbourne Subcortex Atlas
22631
54
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
22343
55
Neuroimaging Made Easy Blog
22106
56
4D UNC Neonatal and Infant Cortical Surface Atlases
22104
57
SPHARM-PDM Toolbox
21500
58
SRI24 Atlas: Normal Adult Brain Anatomy
19628
59
Mango
19303
60
Data Format Tools
19094
61
Fast Nonlocal Means for MRI denoising
18861
62
Vaa3D and Vaa3D-Neuron
18849
63
BrainMask Volume Processing Tool
18816
64
Surf Ice
18663
65
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
18479
66
Automatic Registration Toolbox
18473
67
MITK Diffusion
18307
68
CANDI Neuroimaging Access Point
18275
69
GRETNA
17518
70
Group ICA Toolbox (GIFT and EEGIFT)
17506
71
Talairach Daemon
16908
72
3DSlicerLupusLesionModule
16887
73
Subject Order-Independent Group ICA
16509
74
Diffusion Toolkit / TrackVis
16509
75
Awake Rat rsfMRI Database
16395
76
DCP：Diffusion Connectome Pipeline
16250
77
Spatially Constrained Parcellation
16245
78
3D Slicer
16211
79
Freesurfer fsaverage
16005
80
Computational Morphometry Toolkit (CMTK)
15947
81
BrainSuite
15761
82
MRtrix
15686
83
Human Imaging Database (HID)
15527
84
ShapePopulationViewer
15454
85
Hammer And WML Modules for 3D Slicer
15324
86
ENIGMA-DTI pipeline
14867
87
AutoSeg
14372
88
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
14274
89
MARS (Multi-Atlas Robust Segmentation)
14180
90
FSL
14064
91
Brainstorm
13841
92
Artifact Detection Tools (ART)
13388
93
dcm2nii
13220
94
libminc - Medical Image NetCDF library
12871
95
Nighres
12601
96
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
12412
97
ABSORB for groupwise registration
12322
98
Maps4Mipav (Exploratory JIST)
12228
99
NIfTI
12200
100
ANDA
12176