Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
Nilearn
1086474
2
MRIcron
1010898
3
BIDScoin
892083
4
ITK-SNAP
476361
5
FCP/INDI PRIVATE SITE
395484
6
IIT Human Brain Atlas (v.5.0)
236658
7
CONN : functional connectivity toolbox
221167
8
MRIcroGL
211606
9
fMRI-CPCA
209547
10
1000 Functional Connectomes Project
185300
11
BrainNet Viewer
129336
12
BXH/XCEDE Tools
108038
13
NIDB - Neuroinformatics Database
99237
14
DTI-TK
99004
15
age-ility
89813
16
IBSR
84034
17
BioImage Suite
83447
18
Multi-Modal MRI Reproducibility Resource
78475
19
Solar Eclipse Imaging Genetics tools
78230
20
Waxholm Space Atlas of the Sprague Dawley Rat Brain
77967
21
JIST: Java Image Science Toolkit
74097
22
BrainFlow
71972
23
WFU_PickAtlas
67196
24
GIFTI
59167
25
NITRC Computational Environment (NITRC-CE)
56773
26
PANDA: a pipeline tool for diffusion MRI
55420
27
The Neuro Bureau
52518
28
3T DWI test-retest reliability dataset
50087
29
Functional Imaging BIRN
49647
30
Multimodal Visual Consciousness Study Dataset
45833
31
TOADS-CRUISE Brain Segmentation Tools
44125
32
Generalized PPI Toolbox
43075
33
fNIRS Data Analysis Environment
42971
34
QuickNII - Serial section aligner to volumetric atlases
41210
35
EEGLAB
40101
36
BrainMap Database
38428
37
Network-Based Statistic (NBS)
38200
38
FreeSurfer
37996
39
MIITRA atlas
37253
40
Standard Amygdalar fMRI Probe Tasks
35906
41
NeuroImaging Analysis Kit (NIAK)
35338
42
UNC 0-1-2 Infant Atlases
34197
43
Brain Biomechanics Imaging Resources
33210
44
DWI/DTI Quality Control Tool: DTIPrep
31286
45
Graph Theory GLM (GTG) MATLAB Toolbox
31276
46
Homer2
31013
47
TumorSim
29942
48
CBS High-Res Brain Processing Tools
28399
49
NYU CSC TestRetest
28187
50
NeuroDebian
28186
51
Melbourne Subcortex Atlas
28002
52
BrainVisa Morphologist extensions
27651
53
Anima
27499
54
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
26436
55
XNAT Extras
26160
56
4D UNC Neonatal and Infant Cortical Surface Atlases
25553
57
SPHARM-PDM Toolbox
24004
58
Neuroimaging Made Easy Blog
23444
59
SRI24 Atlas: Normal Adult Brain Anatomy
21998
60
BrainMask Volume Processing Tool
21489
61
CANDI Neuroimaging Access Point
21312
62
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
20942
63
Data Format Tools
20329
64
Fast Nonlocal Means for MRI denoising
20304
65
Vaa3D and Vaa3D-Neuron
20119
66
Mango
19631
67
3DSlicerLupusLesionModule
19515
68
Surf Ice
19432
69
ShapePopulationViewer
19163
70
Group ICA Toolbox (GIFT and EEGIFT)
19018
71
Automatic Registration Toolbox
18987
72
MRtrix
18889
73
MITK Diffusion
18470
74
Awake Rat rsfMRI Database
18314
75
ANDA
18073
76
GRETNA
17841
77
Subject Order-Independent Group ICA
17750
78
Hammer And WML Modules for 3D Slicer
17673
79
Talairach Daemon
17549
80
DCP：Diffusion Connectome Pipeline
17155
81
Human Imaging Database (HID)
17102
82
Diffusion Toolkit / TrackVis
17031
83
AutoSeg
17010
84
Freesurfer fsaverage
16974
85
Spatially Constrained Parcellation
16758
86
ENIGMA-DTI pipeline
16697
87
BrainSuite
16673
88
Computational Morphometry Toolkit (CMTK)
16620
89
3D Slicer
16334
90
NeuroDOT
15771
91
Multi-site Frequency Drift MR Spectroscopy
15604
92
MARS (Multi-Atlas Robust Segmentation)
15330
93
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
15251
94
FSL
14697
95
ReproNim: A Center for Reproducible Neuroimaging Computation
14410
96
Artifact Detection Tools (ART)
13979
97
Maps4Mipav (Exploratory JIST)
13908
98
Brainstorm
13849
99
ABSORB for groupwise registration
13719
100
3DMeshMetric
13706