Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
946006
2
Nilearn
868846
3
BIDScoin
478398
4
ITK-SNAP
457165
5
FCP/INDI PRIVATE SITE
369843
6
IIT Human Brain Atlas (v.5.0)
208616
7
fMRI-CPCA
203825
8
MRIcroGL
196383
9
CONN : functional connectivity toolbox
187032
10
1000 Functional Connectomes Project
181687
11
BrainNet Viewer
110161
12
DTI-TK
94899
13
IBSR
80335
14
BioImage Suite
76878
15
Multi-Modal MRI Reproducibility Resource
72963
16
BXH/XCEDE Tools
72371
17
age-ility
70967
18
NIDB - Neuroinformatics Database
69411
19
Waxholm Space Atlas of the Sprague Dawley Rat Brain
66075
20
WFU_PickAtlas
65682
21
JIST: Java Image Science Toolkit
56337
22
Solar Eclipse Imaging Genetics tools
55342
23
BrainFlow
51032
24
The Neuro Bureau
49443
25
PANDA: a pipeline tool for diffusion MRI
49271
26
GIFTI
47254
27
Functional Imaging BIRN
44144
28
NITRC Computational Environment (NITRC-CE)
43552
29
3T DWI test-retest reliability dataset
42669
30
EEGLAB
40014
31
fNIRS Data Analysis Environment
39822
32
TOADS-CRUISE Brain Segmentation Tools
39538
33
FreeSurfer
37983
34
Generalized PPI Toolbox
36213
35
BrainMap Database
33700
36
Multimodal Visual Consciousness Study Dataset
32040
37
QuickNII - Serial section aligner to volumetric atlases
31679
38
Network-Based Statistic (NBS)
30979
39
UNC 0-1-2 Infant Atlases
29108
40
Homer2
27811
41
MIITRA atlas
27712
42
Brain Biomechanics Imaging Resources
26461
43
NeuroDebian
26060
44
Anima
25819
45
NYU CSC TestRetest
25508
46
BrainVisa Morphologist extensions
25052
47
NeuroImaging Analysis Kit (NIAK)
23419
48
XNAT Extras
23312
49
TumorSim
22765
50
DWI/DTI Quality Control Tool: DTIPrep
22040
51
Neuroimaging Made Easy Blog
20988
52
Melbourne Subcortex Atlas
20561
53
4D UNC Neonatal and Infant Cortical Surface Atlases
19546
54
CBS High-Res Brain Processing Tools
19530
55
Mango
19039
56
Graph Theory GLM (GTG) MATLAB Toolbox
18660
57
Data Format Tools
18254
58
Surf Ice
18207
59
MITK Diffusion
18114
60
Automatic Registration Toolbox
18046
61
Vaa3D and Vaa3D-Neuron
17858
62
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
17805
63
Fast Nonlocal Means for MRI denoising
17617
64
SRI24 Atlas: Normal Adult Brain Anatomy
17586
65
GRETNA
17311
66
BrainMask Volume Processing Tool
17232
67
Group ICA Toolbox (GIFT and EEGIFT)
16484
68
Talairach Daemon
16421
69
CANDI Neuroimaging Access Point
16415
70
SPHARM-PDM Toolbox
16103
71
Diffusion Toolkit / TrackVis
16095
72
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
16076
73
3D Slicer
16039
74
Spatially Constrained Parcellation
15889
75
DCP：Diffusion Connectome Pipeline
15556
76
Freesurfer fsaverage
15397
77
Subject Order-Independent Group ICA
15329
78
Computational Morphometry Toolkit (CMTK)
15328
79
3DSlicerLupusLesionModule
15262
80
BrainSuite
14970
81
Awake Rat rsfMRI Database
14670
82
Human Imaging Database (HID)
14503
83
MRtrix
13886
84
Hammer And WML Modules for 3D Slicer
13876
85
Brainstorm
13832
86
FSL
13560
87
ENIGMA-DTI pipeline
13391
88
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
13330
89
SVNTest
13269
90
dcm2nii
13152
91
libminc - Medical Image NetCDF library
12822
92
Artifact Detection Tools (ART)
12781
93
MARS (Multi-Atlas Robust Segmentation)
12741
94
ShapePopulationViewer
12641
95
BrainVISA
11752
96
NIfTI
11700
97
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
11654
98
Task Independent Fluctuations Discussion
11539
99
SPM for fNIRS toolbox
11328
100
Nighres
11300