Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
940774
2
Nilearn
756627
3
ITK-SNAP
454073
4
BIDScoin
425057
5
FCP/INDI PRIVATE SITE
364111
6
IIT Human Brain Atlas (v.5.0)
203052
7
fMRI-CPCA
199174
8
MRIcroGL
193374
9
CONN : functional connectivity toolbox
183781
10
1000 Functional Connectomes Project
181000
11
BrainNet Viewer
107738
12
DTI-TK
93680
13
IBSR
79739
14
BioImage Suite
76072
15
Multi-Modal MRI Reproducibility Resource
71651
16
age-ility
68835
17
BXH/XCEDE Tools
68767
18
WFU_PickAtlas
65271
19
NIDB - Neuroinformatics Database
65208
20
Waxholm Space Atlas of the Sprague Dawley Rat Brain
57285
21
Solar Eclipse Imaging Genetics tools
52659
22
JIST: Java Image Science Toolkit
52212
23
The Neuro Bureau
48885
24
PANDA: a pipeline tool for diffusion MRI
48440
25
BrainFlow
47417
26
GIFTI
46395
27
3T DWI test-retest reliability dataset
41407
28
Functional Imaging BIRN
41120
29
NITRC Computational Environment (NITRC-CE)
41001
30
EEGLAB
39988
31
fNIRS Data Analysis Environment
39280
32
TOADS-CRUISE Brain Segmentation Tools
39106
33
FreeSurfer
37983
34
Generalized PPI Toolbox
35789
35
BrainMap Database
33187
36
Multimodal Visual Consciousness Study Dataset
29770
37
Network-Based Statistic (NBS)
29507
38
QuickNII - Serial section aligner to volumetric atlases
28637
39
Homer2
27532
40
UNC 0-1-2 Infant Atlases
26456
41
NeuroDebian
25705
42
Anima
25477
43
NYU CSC TestRetest
25325
44
Brain Biomechanics Imaging Resources
25098
45
BrainVisa Morphologist extensions
24736
46
XNAT Extras
22435
47
MIITRA atlas
19682
48
Melbourne Subcortex Atlas
19602
49
Neuroimaging Made Easy Blog
19588
50
Mango
18933
51
CBS High-Res Brain Processing Tools
18926
52
MITK Diffusion
18079
53
Data Format Tools
18021
54
Surf Ice
17990
55
4D UNC Neonatal and Infant Cortical Surface Atlases
17944
56
Automatic Registration Toolbox
17885
57
Vaa3D and Vaa3D-Neuron
17468
58
Fast Nonlocal Means for MRI denoising
17273
59
GRETNA
17167
60
SRI24 Atlas: Normal Adult Brain Anatomy
17081
61
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
16585
62
Group ICA Toolbox (GIFT and EEGIFT)
16158
63
CANDI Neuroimaging Access Point
16041
64
3D Slicer
15942
65
Diffusion Toolkit / TrackVis
15927
66
Talairach Daemon
15889
67
Spatially Constrained Parcellation
15731
68
BrainMask Volume Processing Tool
15632
69
DCP：Diffusion Connectome Pipeline
15334
70
Computational Morphometry Toolkit (CMTK)
15190
71
3DSlicerLupusLesionModule
14997
72
Freesurfer fsaverage
14997
73
DWI/DTI Quality Control Tool: DTIPrep
14684
74
BrainSuite
14641
75
Awake Rat rsfMRI Database
14190
76
TumorSim
14030
77
Subject Order-Independent Group ICA
14010
78
Human Imaging Database (HID)
13966
79
Brainstorm
13829
80
MRtrix
13768
81
Hammer And WML Modules for 3D Slicer
13511
82
NeuroImaging Analysis Kit (NIAK)
13454
83
FSL
13400
84
dcm2nii
13117
85
ENIGMA-DTI pipeline
12841
86
libminc - Medical Image NetCDF library
12810
87
Artifact Detection Tools (ART)
12641
88
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
12547
89
SVNTest
12251
90
BrainVISA
11671
91
SPHARM-PDM Toolbox
11520
92
NIfTI
11404
93
MARS (Multi-Atlas Robust Segmentation)
11374
94
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
11367
95
Task Independent Fluctuations Discussion
11352
96
Graph Theory GLM (GTG) MATLAB Toolbox
11269
97
Diffusional Kurtosis Estimator
11191
98
2008 MICCAI MS Lesion Segmentation Challenge
11098
99
SPM for fNIRS toolbox
11052
100
NODDI Matlab Toolbox
10863