Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
Nilearn
1082089
2
MRIcron
1009867
3
BIDScoin
884527
4
ITK-SNAP
475969
5
FCP/INDI PRIVATE SITE
395037
6
IIT Human Brain Atlas (v.5.0)
236219
7
CONN : functional connectivity toolbox
220543
8
MRIcroGL
211353
9
fMRI-CPCA
209470
10
1000 Functional Connectomes Project
185260
11
BrainNet Viewer
128940
12
BXH/XCEDE Tools
107502
13
DTI-TK
98927
14
NIDB - Neuroinformatics Database
98534
15
age-ility
89484
16
IBSR
83924
17
BioImage Suite
83357
18
Multi-Modal MRI Reproducibility Resource
78391
19
Solar Eclipse Imaging Genetics tools
77852
20
Waxholm Space Atlas of the Sprague Dawley Rat Brain
77726
21
JIST: Java Image Science Toolkit
73773
22
BrainFlow
71551
23
WFU_PickAtlas
67164
24
GIFTI
58890
25
NITRC Computational Environment (NITRC-CE)
56556
26
PANDA: a pipeline tool for diffusion MRI
55348
27
The Neuro Bureau
52475
28
3T DWI test-retest reliability dataset
49963
29
Functional Imaging BIRN
49537
30
Multimodal Visual Consciousness Study Dataset
45580
31
TOADS-CRUISE Brain Segmentation Tools
44004
32
fNIRS Data Analysis Environment
42930
33
Generalized PPI Toolbox
42912
34
QuickNII - Serial section aligner to volumetric atlases
41107
35
EEGLAB
40100
36
BrainMap Database
38351
37
Network-Based Statistic (NBS)
38089
38
FreeSurfer
37994
39
MIITRA atlas
37152
40
Standard Amygdalar fMRI Probe Tasks
35459
41
NeuroImaging Analysis Kit (NIAK)
35208
42
UNC 0-1-2 Infant Atlases
34111
43
Brain Biomechanics Imaging Resources
33107
44
DWI/DTI Quality Control Tool: DTIPrep
31084
45
Graph Theory GLM (GTG) MATLAB Toolbox
31025
46
Homer2
30933
47
TumorSim
29787
48
NYU CSC TestRetest
28172
49
NeuroDebian
28145
50
CBS High-Res Brain Processing Tools
28104
51
Melbourne Subcortex Atlas
27812
52
BrainVisa Morphologist extensions
27600
53
Anima
27479
54
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
26249
55
XNAT Extras
26111
56
4D UNC Neonatal and Infant Cortical Surface Atlases
25338
57
SPHARM-PDM Toolbox
23934
58
Neuroimaging Made Easy Blog
23415
59
SRI24 Atlas: Normal Adult Brain Anatomy
21933
60
BrainMask Volume Processing Tool
21360
61
CANDI Neuroimaging Access Point
21224
62
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
20761
63
Data Format Tools
20282
64
Fast Nonlocal Means for MRI denoising
20265
65
Vaa3D and Vaa3D-Neuron
20091
66
Mango
19620
67
3DSlicerLupusLesionModule
19409
68
Surf Ice
19407
69
ShapePopulationViewer
18997
70
Group ICA Toolbox (GIFT and EEGIFT)
18987
71
Automatic Registration Toolbox
18959
72
MRtrix
18725
73
MITK Diffusion
18467
74
Awake Rat rsfMRI Database
18273
75
ANDA
17828
76
GRETNA
17820
77
Subject Order-Independent Group ICA
17710
78
Hammer And WML Modules for 3D Slicer
17586
79
Talairach Daemon
17534
80
DCP：Diffusion Connectome Pipeline
17116
81
Human Imaging Database (HID)
17039
82
Diffusion Toolkit / TrackVis
17016
83
Freesurfer fsaverage
16954
84
AutoSeg
16899
85
Spatially Constrained Parcellation
16743
86
ENIGMA-DTI pipeline
16657
87
BrainSuite
16648
88
Computational Morphometry Toolkit (CMTK)
16611
89
3D Slicer
16332
90
NeuroDOT
15668
91
Multi-site Frequency Drift MR Spectroscopy
15367
92
MARS (Multi-Atlas Robust Segmentation)
15307
93
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
15222
94
FSL
14681
95
ReproNim: A Center for Reproducible Neuroimaging Computation
14341
96
Artifact Detection Tools (ART)
13954
97
Maps4Mipav (Exploratory JIST)
13850
98
Brainstorm
13848
99
ABSORB for groupwise registration
13700
100
3DMeshMetric
13607