Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
946894
2
Nilearn
879107
3
BIDScoin
498255
4
ITK-SNAP
458291
5
FCP/INDI PRIVATE SITE
371197
6
IIT Human Brain Atlas (v.5.0)
209700
7
fMRI-CPCA
204441
8
MRIcroGL
196932
9
CONN : functional connectivity toolbox
188008
10
1000 Functional Connectomes Project
181835
11
BrainNet Viewer
110808
12
DTI-TK
95058
13
IBSR
80391
14
BioImage Suite
77071
15
BXH/XCEDE Tools
73496
16
Multi-Modal MRI Reproducibility Resource
73209
17
age-ility
71419
18
NIDB - Neuroinformatics Database
70975
19
Waxholm Space Atlas of the Sprague Dawley Rat Brain
66649
20
WFU_PickAtlas
65763
21
JIST: Java Image Science Toolkit
56801
22
Solar Eclipse Imaging Genetics tools
55709
23
BrainFlow
52212
24
The Neuro Bureau
49588
25
PANDA: a pipeline tool for diffusion MRI
49557
26
GIFTI
47490
27
Functional Imaging BIRN
44299
28
NITRC Computational Environment (NITRC-CE)
44053
29
3T DWI test-retest reliability dataset
43016
30
EEGLAB
40022
31
fNIRS Data Analysis Environment
39964
32
TOADS-CRUISE Brain Segmentation Tools
39660
33
FreeSurfer
37985
34
Generalized PPI Toolbox
36317
35
BrainMap Database
33812
36
Multimodal Visual Consciousness Study Dataset
32866
37
QuickNII - Serial section aligner to volumetric atlases
32422
38
Network-Based Statistic (NBS)
31209
39
MIITRA atlas
29280
40
UNC 0-1-2 Infant Atlases
29265
41
Homer2
27875
42
Brain Biomechanics Imaging Resources
26831
43
NeuroDebian
26167
44
Anima
25929
45
NYU CSC TestRetest
25560
46
BrainVisa Morphologist extensions
25247
47
NeuroImaging Analysis Kit (NIAK)
25119
48
TumorSim
23748
49
XNAT Extras
23468
50
DWI/DTI Quality Control Tool: DTIPrep
23248
51
Neuroimaging Made Easy Blog
21054
52
Melbourne Subcortex Atlas
20763
53
Graph Theory GLM (GTG) MATLAB Toolbox
20654
54
4D UNC Neonatal and Infant Cortical Surface Atlases
20015
55
CBS High-Res Brain Processing Tools
19654
56
Mango
19069
57
Data Format Tools
18307
58
Surf Ice
18234
59
MITK Diffusion
18124
60
Automatic Registration Toolbox
18093
61
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
18050
62
Vaa3D and Vaa3D-Neuron
17951
63
SRI24 Atlas: Normal Adult Brain Anatomy
17722
64
Fast Nonlocal Means for MRI denoising
17663
65
GRETNA
17336
66
BrainMask Volume Processing Tool
17296
67
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
16896
68
Group ICA Toolbox (GIFT and EEGIFT)
16539
69
CANDI Neuroimaging Access Point
16515
70
Talairach Daemon
16449
71
SPHARM-PDM Toolbox
16251
72
Diffusion Toolkit / TrackVis
16135
73
3D Slicer
16068
74
Spatially Constrained Parcellation
15927
75
Subject Order-Independent Group ICA
15640
76
DCP：Diffusion Connectome Pipeline
15616
77
Freesurfer fsaverage
15497
78
3DSlicerLupusLesionModule
15410
79
Computational Morphometry Toolkit (CMTK)
15342
80
BrainSuite
15061
81
Awake Rat rsfMRI Database
14828
82
Human Imaging Database (HID)
14624
83
Hammer And WML Modules for 3D Slicer
13939
84
MRtrix
13914
85
Brainstorm
13835
86
SVNTest
13627
87
FSL
13612
88
ENIGMA-DTI pipeline
13515
89
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
13430
90
ShapePopulationViewer
13199
91
dcm2nii
13159
92
MARS (Multi-Atlas Robust Segmentation)
12927
93
libminc - Medical Image NetCDF library
12827
94
Artifact Detection Tools (ART)
12821
95
Nighres
11910
96
BrainVISA
11774
97
NIfTI
11749
98
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
11696
99
Task Independent Fluctuations Discussion
11576
100
SPM for fNIRS toolbox
11428