Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
Nilearn
1162525
2
BIDScoin
1096307
3
MRIcron
1032045
4
ITK-SNAP
482125
5
FCP/INDI PRIVATE SITE
405494
6
IIT Human Brain Atlas (v.5.0)
246835
7
CONN : functional connectivity toolbox
235419
8
MRIcroGL
215569
9
fMRI-CPCA
211357
10
1000 Functional Connectomes Project
186450
11
BrainNet Viewer
135215
12
BXH/XCEDE Tools
119317
13
NIDB - Neuroinformatics Database
110750
14
DTI-TK
100356
15
age-ility
94654
16
BioImage Suite
87027
17
IBSR
85400
18
Solar Eclipse Imaging Genetics tools
85005
19
Waxholm Space Atlas of the Sprague Dawley Rat Brain
82096
20
BrainFlow
81055
21
Multi-Modal MRI Reproducibility Resource
80424
22
JIST: Java Image Science Toolkit
79855
23
WFU_PickAtlas
67526
24
GIFTI
62817
25
NITRC Computational Environment (NITRC-CE)
60576
26
PANDA: a pipeline tool for diffusion MRI
57358
27
The Neuro Bureau
54115
28
3T DWI test-retest reliability dataset
52610
29
Functional Imaging BIRN
51583
30
Multimodal Visual Consciousness Study Dataset
50408
31
Standard Amygdalar fMRI Probe Tasks
49764
32
TOADS-CRUISE Brain Segmentation Tools
45939
33
Generalized PPI Toolbox
45888
34
QuickNII - Serial section aligner to volumetric atlases
44182
35
fNIRS Data Analysis Environment
43886
36
MIITRA atlas
40440
37
Network-Based Statistic (NBS)
40321
38
EEGLAB
40116
39
BrainMap Database
39775
40
FreeSurfer
38003
41
NeuroImaging Analysis Kit (NIAK)
37594
42
Brain Biomechanics Imaging Resources
36614
43
UNC 0-1-2 Infant Atlases
36070
44
Graph Theory GLM (GTG) MATLAB Toolbox
35128
45
DWI/DTI Quality Control Tool: DTIPrep
33413
46
Melbourne Subcortex Atlas
32950
47
TumorSim
32260
48
CBS High-Res Brain Processing Tools
32059
49
Homer2
31973
50
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
30592
51
NYU CSC TestRetest
29185
52
NeuroDebian
28891
53
Anima
28510
54
BrainVisa Morphologist extensions
28454
55
4D UNC Neonatal and Infant Cortical Surface Atlases
27760
56
XNAT Extras
27073
57
SPHARM-PDM Toolbox
25080
58
Neuroimaging Made Easy Blog
24208
59
SRI24 Atlas: Normal Adult Brain Anatomy
23652
60
BrainMask Volume Processing Tool
23488
61
CANDI Neuroimaging Access Point
23027
62
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
22858
63
ANDA
22452
64
3DSlicerLupusLesionModule
21603
65
ShapePopulationViewer
21395
66
Fast Nonlocal Means for MRI denoising
21159
67
Data Format Tools
21157
68
Vaa3D and Vaa3D-Neuron
20896
69
MRtrix
20608
70
Surf Ice
19881
71
Mango
19833
72
Group ICA Toolbox (GIFT and EEGIFT)
19798
73
Awake Rat rsfMRI Database
19584
74
Automatic Registration Toolbox
19329
75
Hammer And WML Modules for 3D Slicer
19179
76
Multi-site Frequency Drift MR Spectroscopy
18999
77
AutoSeg
18754
78
MITK Diffusion
18637
79
Subject Order-Independent Group ICA
18256
80
NeuroDOT
18128
81
GRETNA
18024
82
Talairach Daemon
17980
83
Human Imaging Database (HID)
17926
84
DCP：Diffusion Connectome Pipeline
17689
85
ENIGMA-DTI pipeline
17526
86
Diffusion Toolkit / TrackVis
17371
87
Freesurfer fsaverage
17367
88
BrainSuite
17286
89
resting-state fMRI of patients with pre-eclampsia and healthy pregnant women
17102
90
3D Slicer
17082
91
Spatially Constrained Parcellation
17068
92
Computational Morphometry Toolkit (CMTK)
17011
93
MARS (Multi-Atlas Robust Segmentation)
16160
94
ReproNim: A Center for Reproducible Neuroimaging Computation
16100
95
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
15926
96
FSL
14966
97
3DMeshMetric
14931
98
Maps4Mipav (Exploratory JIST)
14881
99
Nutil - Neuroimaging utilities
14444
100
Artifact Detection Tools (ART)
14350