Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
947113
2
Nilearn
880096
3
BIDScoin
502672
4
ITK-SNAP
458516
5
FCP/INDI PRIVATE SITE
371506
6
IIT Human Brain Atlas (v.5.0)
209833
7
fMRI-CPCA
204555
8
MRIcroGL
197069
9
CONN : functional connectivity toolbox
188292
10
1000 Functional Connectomes Project
181872
11
BrainNet Viewer
110923
12
DTI-TK
95106
13
IBSR
80397
14
BioImage Suite
77117
15
BXH/XCEDE Tools
73610
16
Multi-Modal MRI Reproducibility Resource
73275
17
age-ility
71437
18
NIDB - Neuroinformatics Database
71235
19
Waxholm Space Atlas of the Sprague Dawley Rat Brain
66819
20
WFU_PickAtlas
65786
21
JIST: Java Image Science Toolkit
56890
22
Solar Eclipse Imaging Genetics tools
55765
23
BrainFlow
52450
24
The Neuro Bureau
49623
25
PANDA: a pipeline tool for diffusion MRI
49613
26
GIFTI
47557
27
Functional Imaging BIRN
44350
28
NITRC Computational Environment (NITRC-CE)
44189
29
3T DWI test-retest reliability dataset
43106
30
EEGLAB
40024
31
fNIRS Data Analysis Environment
39996
32
TOADS-CRUISE Brain Segmentation Tools
39695
33
FreeSurfer
37985
34
Generalized PPI Toolbox
36354
35
BrainMap Database
33857
36
Multimodal Visual Consciousness Study Dataset
33037
37
QuickNII - Serial section aligner to volumetric atlases
32485
38
Network-Based Statistic (NBS)
31287
39
MIITRA atlas
29402
40
UNC 0-1-2 Infant Atlases
29290
41
Homer2
27885
42
Brain Biomechanics Imaging Resources
26877
43
NeuroDebian
26184
44
Anima
25950
45
NYU CSC TestRetest
25578
46
NeuroImaging Analysis Kit (NIAK)
25420
47
BrainVisa Morphologist extensions
25282
48
TumorSim
23793
49
XNAT Extras
23487
50
DWI/DTI Quality Control Tool: DTIPrep
23313
51
Neuroimaging Made Easy Blog
21080
52
Graph Theory GLM (GTG) MATLAB Toolbox
20826
53
Melbourne Subcortex Atlas
20824
54
4D UNC Neonatal and Infant Cortical Surface Atlases
20052
55
CBS High-Res Brain Processing Tools
19676
56
Mango
19073
57
Data Format Tools
18326
58
Surf Ice
18247
59
MITK Diffusion
18130
60
Automatic Registration Toolbox
18103
61
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
18087
62
Vaa3D and Vaa3D-Neuron
17967
63
SRI24 Atlas: Normal Adult Brain Anatomy
17778
64
Fast Nonlocal Means for MRI denoising
17678
65
GRETNA
17337
66
BrainMask Volume Processing Tool
17320
67
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
16921
68
Group ICA Toolbox (GIFT and EEGIFT)
16562
69
CANDI Neuroimaging Access Point
16552
70
Talairach Daemon
16458
71
SPHARM-PDM Toolbox
16323
72
Diffusion Toolkit / TrackVis
16144
73
3D Slicer
16072
74
Spatially Constrained Parcellation
15935
75
Subject Order-Independent Group ICA
15686
76
DCP：Diffusion Connectome Pipeline
15625
77
Freesurfer fsaverage
15504
78
3DSlicerLupusLesionModule
15432
79
Computational Morphometry Toolkit (CMTK)
15357
80
BrainSuite
15075
81
Awake Rat rsfMRI Database
14871
82
Human Imaging Database (HID)
14642
83
Hammer And WML Modules for 3D Slicer
13964
84
MRtrix
13920
85
Brainstorm
13835
86
SVNTest
13678
87
FSL
13623
88
ENIGMA-DTI pipeline
13546
89
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
13450
90
ShapePopulationViewer
13253
91
dcm2nii
13160
92
MARS (Multi-Atlas Robust Segmentation)
12969
93
Artifact Detection Tools (ART)
12838
94
libminc - Medical Image NetCDF library
12827
95
Nighres
11984
96
BrainVISA
11777
97
NIfTI
11758
98
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
11698
99
Task Independent Fluctuations Discussion
11588
100
SPM for fNIRS toolbox
11466