Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
827724
2
Nilearn
438766
3
ITK-SNAP
395115
4
FCP/INDI PRIVATE SITE
250596
5
1000 Functional Connectomes Project
168363
6
IIT Human Brain Atlas (v.5.0)
137370
7
CONN : functional connectivity toolbox
136994
8
MRIcroGL
130643
9
DTI-TK
86424
10
BrainNet Viewer
76021
11
IBSR
67556
12
WFU_PickAtlas
55951
13
Multi-Modal MRI Reproducibility Resource
55644
14
age-ility
43333
15
BXH/XCEDE Tools
41446
16
BioImage Suite
39637
17
EEGLAB
39471
18
PANDA: a pipeline tool for diffusion MRI
38703
19
FreeSurfer
37833
20
Solar Eclipse Imaging Genetics tools
35859
21
JIST: Java Image Science Toolkit
35585
22
The Neuro Bureau
35556
23
TOADS-CRUISE Brain Segmentation Tools
35379
24
Waxholm Space Atlas of the Sprague Dawley Rat Brain
32732
25
GIFTI
31998
26
Functional Imaging BIRN
30603
27
fNIRS Data Analysis Environment
30551
28
Generalized PPI Toolbox
28992
29
NITRC Computational Environment (NITRC-CE)
25978
30
3T DWI test-retest reliability dataset
24772
31
BrainMap Database
23708
32
Homer2
21452
33
NeuroDebian
19914
34
BrainVisa Morphologist extensions
19183
35
fMRI-CPCA
19023
36
Network-Based Statistic (NBS)
18728
37
Anima
18501
38
NYU CSC TestRetest
18321
39
Mango
16830
40
UNC 0-1-2 Infant Atlases
16642
41
MITK Diffusion
16610
42
NIDB - Neuroinformatics Database
15894
43
XNAT Extras
15574
44
Neuroimaging Made Easy Blog
15533
45
Automatic Registration Toolbox
14763
46
GRETNA
14237
47
3D Slicer
13976
48
Freesurfer fsaverage
13783
49
Brainstorm
13373
50
Talairach Daemon
13216
51
Data Format Tools
13212
52
Spatially Constrained Parcellation
13090
53
Diffusion Toolkit / TrackVis
12940
54
Surf Ice
12910
55
libminc - Medical Image NetCDF library
12368
56
dcm2nii
12319
57
Vaa3D and Vaa3D-Neuron
12130
58
MRtrix
11940
59
DCP：Diffusion Connectome Pipeline
11733
60
SRI24 Atlas: Normal Adult Brain Anatomy
11718
61
Group ICA Toolbox (GIFT and EEGIFT)
11496
62
CBS High-Res Brain Processing Tools
11446
63
QuickNII - Serial section aligner to volumetric atlases
11227
64
Artifact Detection Tools (ART)
11012
65
BrainMask Volume Processing Tool
10969
66
Computational Morphometry Toolkit (CMTK)
10922
67
FSL
10737
68
3DSlicerLupusLesionModule
10633
69
Subject Order-Independent Group ICA
10547
70
2008 MICCAI MS Lesion Segmentation Challenge
10476
71
BrainVISA
10474
72
DWI/DTI Quality Control Tool: DTIPrep
10357
73
TumorSim
10353
74
CANDI Neuroimaging Access Point
10222
75
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
10093
76
Human Imaging Database (HID)
9858
77
Hammer And WML Modules for 3D Slicer
9840
78
BrainSuite
9771
79
NeuroImaging Analysis Kit (NIAK)
9714
80
Brain Biomechanics Imaging Resources
9595
81
Source Information Flow Toolbox
9472
82
NODDI Matlab Toolbox
9149
83
SPM for fNIRS toolbox
9114
84
Diffusional Kurtosis Estimator
9094
85
CBICA: Cancer Imaging Phenomics Toolkit (CaPTk)
8482
86
NIfTI
8436
87
Melbourne Subcortex Atlas
8432
88
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
8374
89
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
8329
90
SPHARM-PDM Toolbox
8142
91
ENIGMA-DTI pipeline
7837
92
Robust Brain Extraction (ROBEX)
7713
93
Task Independent Fluctuations Discussion
7692
94
4D UNC Neonatal and Infant Cortical Surface Atlases
7641
95
iBEAT
7522
96
MARS (Multi-Atlas Robust Segmentation)
7491
97
BrainVoyager Brain Tutor
7266
98
SPM
7244
99
Center for Functional Neuroimaging Tech
7222
100
NIRS-KIT: A MATLAB toolbox for both task and resting-state fNIRS data analysis
7053