Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
928166
2
Nilearn
705482
3
ITK-SNAP
447344
4
BIDScoin
362647
5
FCP/INDI PRIVATE SITE
353072
6
fMRI-CPCA
196919
7
IIT Human Brain Atlas (v.5.0)
196163
8
MRIcroGL
186832
9
1000 Functional Connectomes Project
179644
10
CONN : functional connectivity toolbox
177124
11
BrainNet Viewer
104412
12
DTI-TK
92660
13
IBSR
78823
14
BioImage Suite
74771
15
Multi-Modal MRI Reproducibility Resource
69796
16
age-ility
65950
17
WFU_PickAtlas
64579
18
BXH/XCEDE Tools
64103
19
NIDB - Neuroinformatics Database
57724
20
Waxholm Space Atlas of the Sprague Dawley Rat Brain
54648
21
Solar Eclipse Imaging Genetics tools
50641
22
JIST: Java Image Science Toolkit
50415
23
The Neuro Bureau
47623
24
PANDA: a pipeline tool for diffusion MRI
47444
25
GIFTI
44579
26
BrainFlow
41363
27
EEGLAB
39945
28
Functional Imaging BIRN
39791
29
3T DWI test-retest reliability dataset
39538
30
NITRC Computational Environment (NITRC-CE)
39401
31
TOADS-CRUISE Brain Segmentation Tools
38648
32
fNIRS Data Analysis Environment
38355
33
FreeSurfer
37975
34
Generalized PPI Toolbox
34824
35
BrainMap Database
31956
36
Network-Based Statistic (NBS)
27463
37
QuickNII - Serial section aligner to volumetric atlases
27318
38
Homer2
26959
39
Multimodal Visual Consciousness Study Dataset
25871
40
NeuroDebian
25107
41
UNC 0-1-2 Infant Atlases
25022
42
Anima
24977
43
NYU CSC TestRetest
24754
44
BrainVisa Morphologist extensions
24225
45
Brain Biomechanics Imaging Resources
23554
46
XNAT Extras
21706
47
Neuroimaging Made Easy Blog
19041
48
Melbourne Subcortex Atlas
18901
49
Mango
18751
50
MITK Diffusion
17952
51
CBS High-Res Brain Processing Tools
17884
52
Automatic Registration Toolbox
17600
53
Data Format Tools
17575
54
MIITRA atlas
17492
55
Surf Ice
17457
56
Fast Nonlocal Means for MRI denoising
17077
57
GRETNA
16940
58
Vaa3D and Vaa3D-Neuron
16900
59
4D UNC Neonatal and Infant Cortical Surface Atlases
16555
60
SRI24 Atlas: Normal Adult Brain Anatomy
16463
61
3D Slicer
15757
62
Diffusion Toolkit / TrackVis
15658
63
Talairach Daemon
15653
64
Spatially Constrained Parcellation
15458
65
Group ICA Toolbox (GIFT and EEGIFT)
15398
66
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
15375
67
CANDI Neuroimaging Access Point
15316
68
DCP：Diffusion Connectome Pipeline
14923
69
Computational Morphometry Toolkit (CMTK)
14835
70
BrainMask Volume Processing Tool
14790
71
3DSlicerLupusLesionModule
14473
72
Freesurfer fsaverage
14392
73
BrainSuite
14056
74
DWI/DTI Quality Control Tool: DTIPrep
13947
75
Brainstorm
13824
76
Human Imaging Database (HID)
13578
77
MRtrix
13457
78
TumorSim
13411
79
Awake Rat rsfMRI Database
13387
80
Subject Order-Independent Group ICA
13241
81
FSL
13129
82
dcm2nii
13053
83
libminc - Medical Image NetCDF library
12773
84
Hammer And WML Modules for 3D Slicer
12747
85
NeuroImaging Analysis Kit (NIAK)
12688
86
Artifact Detection Tools (ART)
12431
87
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
12094
88
ENIGMA-DTI pipeline
11951
89
BrainVISA
11556
90
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
11239
91
NIfTI
11145
92
2008 MICCAI MS Lesion Segmentation Challenge
11063
93
Task Independent Fluctuations Discussion
11063
94
Diffusional Kurtosis Estimator
10974
95
MARS (Multi-Atlas Robust Segmentation)
10928
96
Graph Theory GLM (GTG) MATLAB Toolbox
10913
97
SPM for fNIRS toolbox
10903
98
SPHARM-PDM Toolbox
10815
99
NODDI Matlab Toolbox
10739
100
SVNTest
10691