Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
946829
2
Nilearn
878882
3
BIDScoin
497306
4
ITK-SNAP
458205
5
FCP/INDI PRIVATE SITE
371110
6
IIT Human Brain Atlas (v.5.0)
209683
7
fMRI-CPCA
204432
8
MRIcroGL
196863
9
CONN : functional connectivity toolbox
187922
10
1000 Functional Connectomes Project
181819
11
BrainNet Viewer
110781
12
DTI-TK
95049
13
IBSR
80389
14
BioImage Suite
77067
15
BXH/XCEDE Tools
73432
16
Multi-Modal MRI Reproducibility Resource
73199
17
age-ility
71416
18
NIDB - Neuroinformatics Database
70873
19
Waxholm Space Atlas of the Sprague Dawley Rat Brain
66615
20
WFU_PickAtlas
65754
21
JIST: Java Image Science Toolkit
56781
22
Solar Eclipse Imaging Genetics tools
55692
23
BrainFlow
52171
24
The Neuro Bureau
49584
25
PANDA: a pipeline tool for diffusion MRI
49546
26
GIFTI
47481
27
Functional Imaging BIRN
44287
28
NITRC Computational Environment (NITRC-CE)
44019
29
3T DWI test-retest reliability dataset
42999
30
EEGLAB
40022
31
fNIRS Data Analysis Environment
39959
32
TOADS-CRUISE Brain Segmentation Tools
39657
33
FreeSurfer
37985
34
Generalized PPI Toolbox
36315
35
BrainMap Database
33807
36
Multimodal Visual Consciousness Study Dataset
32804
37
QuickNII - Serial section aligner to volumetric atlases
32415
38
Network-Based Statistic (NBS)
31182
39
MIITRA atlas
29253
40
UNC 0-1-2 Infant Atlases
29246
41
Homer2
27865
42
Brain Biomechanics Imaging Resources
26769
43
NeuroDebian
26159
44
Anima
25917
45
NYU CSC TestRetest
25556
46
BrainVisa Morphologist extensions
25237
47
NeuroImaging Analysis Kit (NIAK)
24985
48
TumorSim
23735
49
XNAT Extras
23460
50
DWI/DTI Quality Control Tool: DTIPrep
23218
51
Neuroimaging Made Easy Blog
21052
52
Melbourne Subcortex Atlas
20753
53
Graph Theory GLM (GTG) MATLAB Toolbox
20630
54
4D UNC Neonatal and Infant Cortical Surface Atlases
19996
55
CBS High-Res Brain Processing Tools
19649
56
Mango
19065
57
Data Format Tools
18304
58
Surf Ice
18232
59
MITK Diffusion
18123
60
Automatic Registration Toolbox
18091
61
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
18050
62
Vaa3D and Vaa3D-Neuron
17949
63
SRI24 Atlas: Normal Adult Brain Anatomy
17719
64
Fast Nonlocal Means for MRI denoising
17661
65
GRETNA
17332
66
BrainMask Volume Processing Tool
17293
67
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
16895
68
Group ICA Toolbox (GIFT and EEGIFT)
16529
69
CANDI Neuroimaging Access Point
16515
70
Talairach Daemon
16448
71
SPHARM-PDM Toolbox
16241
72
Diffusion Toolkit / TrackVis
16133
73
3D Slicer
16064
74
Spatially Constrained Parcellation
15923
75
Subject Order-Independent Group ICA
15618
76
DCP：Diffusion Connectome Pipeline
15615
77
Freesurfer fsaverage
15495
78
3DSlicerLupusLesionModule
15396
79
Computational Morphometry Toolkit (CMTK)
15342
80
BrainSuite
15055
81
Awake Rat rsfMRI Database
14818
82
Human Imaging Database (HID)
14620
83
Hammer And WML Modules for 3D Slicer
13933
84
MRtrix
13913
85
Brainstorm
13835
86
FSL
13605
87
SVNTest
13596
88
ENIGMA-DTI pipeline
13510
89
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
13426
90
ShapePopulationViewer
13196
91
dcm2nii
13158
92
MARS (Multi-Atlas Robust Segmentation)
12923
93
libminc - Medical Image NetCDF library
12827
94
Artifact Detection Tools (ART)
12820
95
Nighres
11883
96
BrainVISA
11771
97
NIfTI
11748
98
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
11696
99
Task Independent Fluctuations Discussion
11571
100
SPM for fNIRS toolbox
11425