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Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

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Rank Tool/Resource name Downloads
  1MRIcron486700      
  2ITK-SNAP166074      
  31000 Functional Connectomes Project104726      
  4DTI-TK71104      
  5CONN : functional connectivity toolbox47090      
  6EEGLAB38277      
  7FreeSurfer36854      
  8Nilearn30686      
  9WFU_PickAtlas30300      
  10TOADS-CRUISE Brain Segmentation Tools28084      
  11DSI Studio27976      
  12Multi-Modal MRI Reproducibility Resource25638      
  13IIT Human Brain Atlas (v.4.1)21330      
  14BrainNet Viewer16428      
  15Functional Imaging BIRN16144      
  16JIST: Java Image Science Toolkit15849      
  17MRIcroGL15682      
  18IBSR15451      
  19PANDA: a pipeline tool for diffusion MRI15045      
  20The Neuro Bureau13959      
  21Generalized PPI Toolbox12749      
  22MINC - Medical Image NetCDF11194      
  23NeuroDebian10760      
  24Solar Eclipse Imaging Genetics tools10740      
  25BrainVisa Morphologist extensions10650      
  26GIFTI10557      
  273D Slicer9760      
  28Mango9615      
  29MITK Diffusion9319      
  30BioImage Suite9018      
  31BrainMap Database8965      
  32Talairach Daemon8865      
  33MRtrix8864      
  34BrainVISA8022      
  35Automatic Registration Toolbox7861      
  36fMRI-CPCA7741      
  37Neuroimaging Made Easy Blog7604      
  38Subject Order-Independent Group ICA7416      
  39Diffusion Toolkit / TrackVis7299      
  40BrainMask Volume Processing Tool6516      
  41XNAT Extras6468      
  42Artifact Detection Tools (ART)6450      
  43fNIRS Data Analysis Environment6439      
  44NYU CSC TestRetest5878      
  45Data Format Tools5776      
  46FSL5744      
  473DSlicerLupusLesionModule5709      
  48Spatially Constrained Parcellation5646      
  49Hammer And WML Modules for 3D Slicer5578      
  50Group ICA Toolbox (GIFT and EEGIFT)5441      
  51BrainVoyager5345      
  52Computational Morphometry Toolkit (CMTK)5118      
  53LONI Pipeline Environment5028      
  54Network-Based Statistic (NBS)4806      
  55SRI24 Atlas: Normal Adult Brain Anatomy4788      
  56NeuroImaging Analysis Kit (NIAK)4737      
  57UNC 0-1-2 Infant Atlases4667      
  58BrainVoyager Brain Tutor4617      
  59Human Imaging Database (HID)4334      
  60Source Information Flow Toolbox4261      
  61Center for Functional Neuroimaging Tech4134      
  62GRETNA3906      
  63SPM3855      
  64ABSORB for groupwise registration3703      
  65MATLAB Tutorial on Diffusion Tensor MRI3558      
  66TumorSim3549      
  67FBIRN Image Processing Scripts (FIPS)3534      
  68NIfTI3525      
  69GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity3523      
  70dcm2nii3466      
  71Vaa3D and Vaa3D-Neuron3401      
  72HAMMER: Deformable Registration3372      
  73SPHARM-PDM Toolbox3350      
  74BrainSuite3295      
  75MRI Defacer3261      
  76ABC (Atlas Based Classification)3177      
  77Maps4Mipav (Exploratory JIST) 3133      
  78BXH/XCEDE Tools3095      
  792008 MICCAI MS Lesion Segmentation Challenge3085      
  80FMRIpower3033      
  813T DWI test-retest reliability dataset3008      
  82REX2942      
  83Optseq - fMRI Event Scheduler2894      
  84CBS High-Res Brain Processing Tools2885      
  85DWI/DTI Quality Control Tool: DTIPrep2885      
  86CANDI Neuroimaging Access Point2866      
  87Pipeline system for Octave and Matlab2849      
  88Task Independent Fluctuations Discussion2828      
  89LONI Debabeler2778      
  90GLIRT2755      
  91DicomBrowser2550      
  92MARS (Multi-Atlas Robust Segmentation)2544      
  93iBEAT2523      
  94JIP fMRI Analysis Toolkit2517      
  95Licensing2490      
  96MIPAV2469      
  97age-ility2409      
  98Robust Brain Extraction (ROBEX)2376      
  99XNAT2372      
  100MRI Studio2353