Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
947536
2
Nilearn
881953
3
BIDScoin
508261
4
ITK-SNAP
458773
5
FCP/INDI PRIVATE SITE
371752
6
IIT Human Brain Atlas (v.5.0)
210113
7
fMRI-CPCA
204642
8
MRIcroGL
197193
9
CONN : functional connectivity toolbox
188512
10
1000 Functional Connectomes Project
181898
11
BrainNet Viewer
111036
12
DTI-TK
95172
13
IBSR
80406
14
BioImage Suite
77145
15
BXH/XCEDE Tools
73854
16
Multi-Modal MRI Reproducibility Resource
73331
17
age-ility
71706
18
NIDB - Neuroinformatics Database
71527
19
Waxholm Space Atlas of the Sprague Dawley Rat Brain
66951
20
WFU_PickAtlas
65804
21
JIST: Java Image Science Toolkit
56949
22
Solar Eclipse Imaging Genetics tools
55866
23
BrainFlow
52653
24
The Neuro Bureau
49705
25
PANDA: a pipeline tool for diffusion MRI
49644
26
GIFTI
47638
27
Functional Imaging BIRN
44398
28
NITRC Computational Environment (NITRC-CE)
44305
29
3T DWI test-retest reliability dataset
43318
30
fNIRS Data Analysis Environment
40029
31
EEGLAB
40026
32
TOADS-CRUISE Brain Segmentation Tools
39708
33
FreeSurfer
37985
34
Generalized PPI Toolbox
36367
35
BrainMap Database
33908
36
Multimodal Visual Consciousness Study Dataset
33201
37
QuickNII - Serial section aligner to volumetric atlases
32545
38
Network-Based Statistic (NBS)
31377
39
MIITRA atlas
29529
40
UNC 0-1-2 Infant Atlases
29341
41
Homer2
27895
42
Brain Biomechanics Imaging Resources
26969
43
NeuroDebian
26210
44
NeuroImaging Analysis Kit (NIAK)
26131
45
Anima
25988
46
NYU CSC TestRetest
25589
47
BrainVisa Morphologist extensions
25327
48
TumorSim
23832
49
XNAT Extras
23500
50
DWI/DTI Quality Control Tool: DTIPrep
23401
51
Neuroimaging Made Easy Blog
21105
52
Graph Theory GLM (GTG) MATLAB Toolbox
20996
53
Melbourne Subcortex Atlas
20874
54
4D UNC Neonatal and Infant Cortical Surface Atlases
20083
55
CBS High-Res Brain Processing Tools
19716
56
Mango
19081
57
Data Format Tools
18342
58
Surf Ice
18258
59
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
18158
60
MITK Diffusion
18135
61
Automatic Registration Toolbox
18110
62
Vaa3D and Vaa3D-Neuron
17985
63
SRI24 Atlas: Normal Adult Brain Anatomy
17787
64
Fast Nonlocal Means for MRI denoising
17696
65
BrainMask Volume Processing Tool
17345
66
GRETNA
17343
67
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
16949
68
CANDI Neuroimaging Access Point
16627
69
Group ICA Toolbox (GIFT and EEGIFT)
16578
70
Talairach Daemon
16471
71
SPHARM-PDM Toolbox
16382
72
Diffusion Toolkit / TrackVis
16157
73
3D Slicer
16079
74
Spatially Constrained Parcellation
15943
75
Subject Order-Independent Group ICA
15729
76
DCP：Diffusion Connectome Pipeline
15632
77
Freesurfer fsaverage
15513
78
3DSlicerLupusLesionModule
15450
79
Computational Morphometry Toolkit (CMTK)
15371
80
BrainSuite
15093
81
Awake Rat rsfMRI Database
14890
82
Human Imaging Database (HID)
14661
83
Hammer And WML Modules for 3D Slicer
13989
84
MRtrix
13940
85
Brainstorm
13835
86
SVNTest
13730
87
FSL
13635
88
ENIGMA-DTI pipeline
13592
89
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
13465
90
ShapePopulationViewer
13259
91
dcm2nii
13161
92
MARS (Multi-Atlas Robust Segmentation)
13012
93
Artifact Detection Tools (ART)
12840
94
libminc - Medical Image NetCDF library
12827
95
Nighres
12005
96
BrainVISA
11780
97
NIfTI
11768
98
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
11702
99
Task Independent Fluctuations Discussion
11599
100
SPM for fNIRS toolbox
11478