Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
Nilearn
1009132
2
MRIcron
982953
3
BIDScoin
750761
4
ITK-SNAP
469767
5
FCP/INDI PRIVATE SITE
386863
6
IIT Human Brain Atlas (v.5.0)
226950
7
CONN : functional connectivity toolbox
207596
8
fMRI-CPCA
207560
9
MRIcroGL
206750
10
1000 Functional Connectomes Project
184198
11
BrainNet Viewer
121869
12
DTI-TK
97378
13
BXH/XCEDE Tools
92759
14
NIDB - Neuroinformatics Database
89419
15
IBSR
82392
16
age-ility
81683
17
BioImage Suite
81384
18
Multi-Modal MRI Reproducibility Resource
76828
19
Waxholm Space Atlas of the Sprague Dawley Rat Brain
73657
20
Solar Eclipse Imaging Genetics tools
69971
21
JIST: Java Image Science Toolkit
67094
22
WFU_PickAtlas
66748
23
BrainFlow
64241
24
GIFTI
55111
25
PANDA: a pipeline tool for diffusion MRI
53603
26
NITRC Computational Environment (NITRC-CE)
52048
27
The Neuro Bureau
51541
28
3T DWI test-retest reliability dataset
47730
29
Functional Imaging BIRN
47498
30
TOADS-CRUISE Brain Segmentation Tools
42469
31
fNIRS Data Analysis Environment
41985
32
Multimodal Visual Consciousness Study Dataset
41116
33
EEGLAB
40077
34
Generalized PPI Toolbox
39858
35
FreeSurfer
37987
36
QuickNII - Serial section aligner to volumetric atlases
37435
37
BrainMap Database
36869
38
Network-Based Statistic (NBS)
35434
39
MIITRA atlas
34661
40
NeuroImaging Analysis Kit (NIAK)
33120
41
UNC 0-1-2 Infant Atlases
32221
42
Brain Biomechanics Imaging Resources
31090
43
Homer2
29734
44
DWI/DTI Quality Control Tool: DTIPrep
27914
45
TumorSim
27579
46
NeuroDebian
27462
47
NYU CSC TestRetest
26968
48
Anima
26928
49
BrainVisa Morphologist extensions
26801
50
Graph Theory GLM (GTG) MATLAB Toolbox
26488
51
XNAT Extras
25052
52
Melbourne Subcortex Atlas
24194
53
CBS High-Res Brain Processing Tools
24139
54
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
23809
55
4D UNC Neonatal and Infant Cortical Surface Atlases
23204
56
Neuroimaging Made Easy Blog
22673
57
SPHARM-PDM Toolbox
22226
58
SRI24 Atlas: Normal Adult Brain Anatomy
20460
59
BrainMask Volume Processing Tool
19920
60
Data Format Tools
19552
61
Mango
19429
62
Vaa3D and Vaa3D-Neuron
19348
63
Fast Nonlocal Means for MRI denoising
19340
64
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
19235
65
CANDI Neuroimaging Access Point
19148
66
Surf Ice
18912
67
Automatic Registration Toolbox
18668
68
MITK Diffusion
18348
69
Group ICA Toolbox (GIFT and EEGIFT)
18187
70
3DSlicerLupusLesionModule
17762
71
GRETNA
17633
72
Talairach Daemon
17158
73
Subject Order-Independent Group ICA
17034
74
Awake Rat rsfMRI Database
17029
75
Diffusion Toolkit / TrackVis
16698
76
DCP：Diffusion Connectome Pipeline
16672
77
MRtrix
16603
78
Spatially Constrained Parcellation
16449
79
ShapePopulationViewer
16394
80
Freesurfer fsaverage
16349
81
3D Slicer
16253
82
Computational Morphometry Toolkit (CMTK)
16237
83
Hammer And WML Modules for 3D Slicer
16175
84
BrainSuite
16127
85
Human Imaging Database (HID)
16025
86
ENIGMA-DTI pipeline
15575
87
AutoSeg
15376
88
MARS (Multi-Atlas Robust Segmentation)
14669
89
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
14631
90
FSL
14289
91
Standard Amygdalar fMRI Probe Tasks
14206
92
ANDA
13926
93
Brainstorm
13844
94
Artifact Detection Tools (ART)
13605
95
dcm2nii
13252
96
NeuroDOT
13016
97
Nighres
12923
98
libminc - Medical Image NetCDF library
12878
99
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
12831
100
Maps4Mipav (Exploratory JIST)
12717