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Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

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Rank Tool/Resource name Downloads
  31000 Functional Connectomes Project103402      
  5CONN : functional connectivity toolbox45800      
  10TOADS-CRUISE Brain Segmentation Tools27948      
  11DSI Studio27759      
  12Multi-Modal MRI Reproducibility Resource25346      
  13IIT Human Brain Atlas (v.4.1)21028      
  14BrainNet Viewer16108      
  15Functional Imaging BIRN15966      
  16JIST: Java Image Science Toolkit15587      
  19PANDA: a pipeline tool for diffusion MRI14769      
  20The Neuro Bureau13737      
  21Generalized PPI Toolbox12490      
  22MINC - Medical Image NetCDF11103      
  24BrainVisa Morphologist extensions10481      
  25Solar Eclipse Imaging Genetics tools10422      
  273D Slicer9601      
  29MITK Diffusion9104      
  30BrainMap Database8872      
  32Talairach Daemon8818      
  33BioImage Suite8602      
  35Automatic Registration Toolbox7841      
  37Neuroimaging Made Easy Blog7470      
  38Subject Order-Independent Group ICA7383      
  39Diffusion Toolkit / TrackVis7213      
  40BrainMask Volume Processing Tool6459      
  41XNAT Extras6386      
  42Artifact Detection Tools (ART)6354      
  43fNIRS Data Analysis Environment6220      
  44NYU CSC TestRetest5836      
  46Data Format Tools5673      
  48Spatially Constrained Parcellation5535      
  49Hammer And WML Modules for 3D Slicer5504      
  50Group ICA Toolbox (GIFT and EEGIFT)5401      
  52Computational Morphometry Toolkit (CMTK)5037      
  53LONI Pipeline Environment4987      
  54SRI24 Atlas: Normal Adult Brain Anatomy4759      
  55Network-Based Statistic (NBS)4696      
  56NeuroImaging Analysis Kit (NIAK)4628      
  57BrainVoyager Brain Tutor4580      
  58UNC 0-1-2 Infant Atlases4558      
  59Human Imaging Database (HID)4296      
  60Source Information Flow Toolbox4141      
  61Center for Functional Neuroimaging Tech4066      
  64ABSORB for groupwise registration3641      
  65MATLAB Tutorial on Diffusion Tensor MRI3520      
  66FBIRN Image Processing Scripts (FIPS)3503      
  69GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity3422      
  70HAMMER: Deformable Registration3340      
  71Vaa3D and Vaa3D-Neuron3286      
  72SPHARM-PDM Toolbox3274      
  74MRI Defacer3218      
  76ABC (Atlas Based Classification)3144      
  77Maps4Mipav (Exploratory JIST) 3111      
  78BXH/XCEDE Tools3052      
  792008 MICCAI MS Lesion Segmentation Challenge2984      
  82Optseq - fMRI Event Scheduler2880      
  83DWI/DTI Quality Control Tool: DTIPrep2843      
  84Pipeline system for Octave and Matlab2831      
  853T DWI test-retest reliability dataset2821      
  86CANDI Neuroimaging Access Point2813      
  87Task Independent Fluctuations Discussion2799      
  88CBS High-Res Brain Processing Tools2773      
  89LONI Debabeler2756      
  91JIP fMRI Analysis Toolkit2499      
  93MARS (Multi-Atlas Robust Segmentation)2482      
  99MRI Studio2329      
  100Numerical Fibre Generator (NFG)2312