Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
945810
2
Nilearn
849910
3
BIDScoin
471309
4
ITK-SNAP
456924
5
FCP/INDI PRIVATE SITE
369409
6
IIT Human Brain Atlas (v.5.0)
208460
7
fMRI-CPCA
202827
8
MRIcroGL
196179
9
CONN : functional connectivity toolbox
186734
10
1000 Functional Connectomes Project
181616
11
BrainNet Viewer
109919
12
DTI-TK
94847
13
IBSR
80315
14
BioImage Suite
76795
15
Multi-Modal MRI Reproducibility Resource
72877
16
BXH/XCEDE Tools
72272
17
age-ility
70951
18
NIDB - Neuroinformatics Database
68990
19
WFU_PickAtlas
65658
20
Waxholm Space Atlas of the Sprague Dawley Rat Brain
65304
21
JIST: Java Image Science Toolkit
55660
22
Solar Eclipse Imaging Genetics tools
55250
23
BrainFlow
50729
24
The Neuro Bureau
49406
25
PANDA: a pipeline tool for diffusion MRI
49019
26
GIFTI
47206
27
Functional Imaging BIRN
43938
28
NITRC Computational Environment (NITRC-CE)
43135
29
3T DWI test-retest reliability dataset
42541
30
EEGLAB
40013
31
fNIRS Data Analysis Environment
39796
32
TOADS-CRUISE Brain Segmentation Tools
39421
33
FreeSurfer
37983
34
Generalized PPI Toolbox
36203
35
BrainMap Database
33679
36
Multimodal Visual Consciousness Study Dataset
31722
37
Network-Based Statistic (NBS)
30868
38
QuickNII - Serial section aligner to volumetric atlases
30004
39
UNC 0-1-2 Infant Atlases
28688
40
Homer2
27783
41
Brain Biomechanics Imaging Resources
26286
42
NeuroDebian
26031
43
Anima
25782
44
NYU CSC TestRetest
25496
45
BrainVisa Morphologist extensions
25024
46
MIITRA atlas
23285
47
XNAT Extras
23201
48
Neuroimaging Made Easy Blog
20936
49
NeuroImaging Analysis Kit (NIAK)
20830
50
DWI/DTI Quality Control Tool: DTIPrep
20433
51
Melbourne Subcortex Atlas
20305
52
CBS High-Res Brain Processing Tools
19485
53
Mango
19031
54
TumorSim
18930
55
4D UNC Neonatal and Infant Cortical Surface Atlases
18873
56
Data Format Tools
18240
57
Surf Ice
18199
58
MITK Diffusion
18111
59
Automatic Registration Toolbox
18030
60
Vaa3D and Vaa3D-Neuron
17826
61
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
17690
62
Fast Nonlocal Means for MRI denoising
17604
63
SRI24 Atlas: Normal Adult Brain Anatomy
17558
64
GRETNA
17302
65
BrainMask Volume Processing Tool
17201
66
Group ICA Toolbox (GIFT and EEGIFT)
16458
67
Talairach Daemon
16408
68
CANDI Neuroimaging Access Point
16408
69
Diffusion Toolkit / TrackVis
16074
70
SPHARM-PDM Toolbox
16070
71
3D Slicer
16029
72
Spatially Constrained Parcellation
15869
73
DCP：Diffusion Connectome Pipeline
15530
74
Freesurfer fsaverage
15340
75
Computational Morphometry Toolkit (CMTK)
15310
76
3DSlicerLupusLesionModule
15250
77
BrainSuite
14939
78
Subject Order-Independent Group ICA
14877
79
Awake Rat rsfMRI Database
14626
80
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
14501
81
Human Imaging Database (HID)
14285
82
Graph Theory GLM (GTG) MATLAB Toolbox
13936
83
MRtrix
13876
84
Hammer And WML Modules for 3D Slicer
13850
85
Brainstorm
13830
86
FSL
13548
87
ENIGMA-DTI pipeline
13252
88
dcm2nii
13149
89
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
13126
90
SVNTest
13124
91
libminc - Medical Image NetCDF library
12820
92
Artifact Detection Tools (ART)
12780
93
MARS (Multi-Atlas Robust Segmentation)
12391
94
BrainVISA
11747
95
NIfTI
11674
96
Task Independent Fluctuations Discussion
11526
97
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
11495
98
Diffusional Kurtosis Estimator
11286
99
SPM for fNIRS toolbox
11216
100
2008 MICCAI MS Lesion Segmentation Challenge
11105