Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
857583
2
Nilearn
484800
3
ITK-SNAP
408417
4
FCP/INDI PRIVATE SITE
276459
5
1000 Functional Connectomes Project
171075
6
IIT Human Brain Atlas (v.5.0)
149181
7
MRIcroGL
146647
8
CONN : functional connectivity toolbox
145701
9
DTI-TK
87959
10
BrainNet Viewer
83141
11
IBSR
70582
12
Multi-Modal MRI Reproducibility Resource
59108
13
WFU_PickAtlas
58774
14
BioImage Suite
52134
15
age-ility
48217
16
BXH/XCEDE Tools
44061
17
PANDA: a pipeline tool for diffusion MRI
40827
18
EEGLAB
39649
19
Solar Eclipse Imaging Genetics tools
39118
20
The Neuro Bureau
38192
21
JIST: Java Image Science Toolkit
38003
22
FreeSurfer
37842
23
Waxholm Space Atlas of the Sprague Dawley Rat Brain
37464
24
TOADS-CRUISE Brain Segmentation Tools
36041
25
GIFTI
34935
26
fNIRS Data Analysis Environment
32723
27
Functional Imaging BIRN
32441
28
Generalized PPI Toolbox
30453
29
NITRC Computational Environment (NITRC-CE)
28542
30
3T DWI test-retest reliability dataset
28020
31
BrainMap Database
24951
32
NIDB - Neuroinformatics Database
23779
33
Homer2
22894
34
BIDScoin
22577
35
NeuroDebian
21351
36
Network-Based Statistic (NBS)
20839
37
fMRI-CPCA
20625
38
Anima
20595
39
BrainVisa Morphologist extensions
20359
40
NYU CSC TestRetest
19726
41
UNC 0-1-2 Infant Atlases
18177
42
Mango
17356
43
MITK Diffusion
17078
44
XNAT Extras
17014
45
Neuroimaging Made Easy Blog
16070
46
Automatic Registration Toolbox
15331
47
GRETNA
15059
48
3D Slicer
14460
49
Data Format Tools
14448
50
Surf Ice
14201
51
Freesurfer fsaverage
13884
52
Talairach Daemon
13830
53
Spatially Constrained Parcellation
13750
54
QuickNII - Serial section aligner to volumetric atlases
13679
55
Diffusion Toolkit / TrackVis
13656
56
Brainstorm
13487
57
Brain Biomechanics Imaging Resources
13402
58
Vaa3D and Vaa3D-Neuron
13386
59
SRI24 Atlas: Normal Adult Brain Anatomy
12720
60
DCP：Diffusion Connectome Pipeline
12560
61
dcm2nii
12534
62
libminc - Medical Image NetCDF library
12508
63
CBS High-Res Brain Processing Tools
12486
64
Group ICA Toolbox (GIFT and EEGIFT)
12284
65
MRtrix
12262
66
Melbourne Subcortex Atlas
12225
67
BrainMask Volume Processing Tool
11801
68
Computational Morphometry Toolkit (CMTK)
11563
69
FSL
11402
70
Artifact Detection Tools (ART)
11368
71
3DSlicerLupusLesionModule
11357
72
DWI/DTI Quality Control Tool: DTIPrep
11101
73
CANDI Neuroimaging Access Point
11009
74
Subject Order-Independent Group ICA
10910
75
BrainSuite
10835
76
TumorSim
10810
77
Human Imaging Database (HID)
10792
78
2008 MICCAI MS Lesion Segmentation Challenge
10785
79
BrainVISA
10770
80
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
10432
81
Hammer And WML Modules for 3D Slicer
10369
82
NeuroImaging Analysis Kit (NIAK)
10189
83
NODDI Matlab Toolbox
9689
84
SPM for fNIRS toolbox
9669
85
Source Information Flow Toolbox
9639
86
Diffusional Kurtosis Estimator
9507
87
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
9286
88
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
9284
89
4D UNC Neonatal and Infant Cortical Surface Atlases
9221
90
NIRS-KIT: A MATLAB toolbox for both task and resting-state fNIRS data analysis
9097
91
NIfTI
9016
92
CBICA: Cancer Imaging Phenomics Toolkit (CaPTk)
8888
93
ENIGMA-DTI pipeline
8756
94
Task Independent Fluctuations Discussion
8558
95
SPHARM-PDM Toolbox
8520
96
MARS (Multi-Atlas Robust Segmentation)
8279
97
Robust Brain Extraction (ROBEX)
8171
98
Awake Rat rsfMRI Database
8096
99
iBEAT
7943
100
Center for Functional Neuroimaging Tech
7685