Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
Nilearn
1156167
2
BIDScoin
1082148
3
MRIcron
1031200
4
ITK-SNAP
481845
5
FCP/INDI PRIVATE SITE
404861
6
IIT Human Brain Atlas (v.5.0)
246239
7
CONN : functional connectivity toolbox
233739
8
MRIcroGL
215271
9
fMRI-CPCA
211284
10
1000 Functional Connectomes Project
186393
11
BrainNet Viewer
134959
12
BXH/XCEDE Tools
118842
13
NIDB - Neuroinformatics Database
109970
14
DTI-TK
100273
15
age-ility
94475
16
BioImage Suite
86510
17
IBSR
85360
18
Solar Eclipse Imaging Genetics tools
84802
19
Waxholm Space Atlas of the Sprague Dawley Rat Brain
81771
20
BrainFlow
80580
21
Multi-Modal MRI Reproducibility Resource
80258
22
JIST: Java Image Science Toolkit
79515
23
WFU_PickAtlas
67505
24
GIFTI
62678
25
NITRC Computational Environment (NITRC-CE)
60316
26
PANDA: a pipeline tool for diffusion MRI
57285
27
The Neuro Bureau
54033
28
3T DWI test-retest reliability dataset
52539
29
Functional Imaging BIRN
51462
30
Multimodal Visual Consciousness Study Dataset
50062
31
Standard Amygdalar fMRI Probe Tasks
49734
32
TOADS-CRUISE Brain Segmentation Tools
45868
33
Generalized PPI Toolbox
45813
34
QuickNII - Serial section aligner to volumetric atlases
44082
35
fNIRS Data Analysis Environment
43844
36
MIITRA atlas
40348
37
Network-Based Statistic (NBS)
40218
38
EEGLAB
40115
39
BrainMap Database
39712
40
FreeSurfer
38003
41
NeuroImaging Analysis Kit (NIAK)
37547
42
Brain Biomechanics Imaging Resources
36520
43
UNC 0-1-2 Infant Atlases
35977
44
Graph Theory GLM (GTG) MATLAB Toolbox
35061
45
DWI/DTI Quality Control Tool: DTIPrep
33373
46
Melbourne Subcortex Atlas
32333
47
TumorSim
32248
48
CBS High-Res Brain Processing Tools
31950
49
Homer2
31925
50
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
30375
51
NYU CSC TestRetest
28997
52
NeuroDebian
28853
53
Anima
28437
54
BrainVisa Morphologist extensions
28389
55
4D UNC Neonatal and Infant Cortical Surface Atlases
27666
56
XNAT Extras
27013
57
SPHARM-PDM Toolbox
24971
58
Neuroimaging Made Easy Blog
24178
59
SRI24 Atlas: Normal Adult Brain Anatomy
23592
60
BrainMask Volume Processing Tool
23435
61
CANDI Neuroimaging Access Point
22938
62
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
22799
63
ANDA
22302
64
3DSlicerLupusLesionModule
21541
65
ShapePopulationViewer
21304
66
Fast Nonlocal Means for MRI denoising
21127
67
Data Format Tools
21115
68
Vaa3D and Vaa3D-Neuron
20842
69
MRtrix
20575
70
Surf Ice
19857
71
Mango
19824
72
Group ICA Toolbox (GIFT and EEGIFT)
19748
73
Awake Rat rsfMRI Database
19519
74
Automatic Registration Toolbox
19314
75
Hammer And WML Modules for 3D Slicer
19128
76
Multi-site Frequency Drift MR Spectroscopy
18982
77
AutoSeg
18742
78
MITK Diffusion
18624
79
Subject Order-Independent Group ICA
18242
80
GRETNA
18005
81
NeuroDOT
17993
82
Talairach Daemon
17959
83
Human Imaging Database (HID)
17888
84
DCP：Diffusion Connectome Pipeline
17672
85
ENIGMA-DTI pipeline
17484
86
Freesurfer fsaverage
17360
87
Diffusion Toolkit / TrackVis
17357
88
BrainSuite
17265
89
resting-state fMRI of patients with pre-eclampsia and healthy pregnant women
17079
90
3D Slicer
17077
91
Spatially Constrained Parcellation
17053
92
Computational Morphometry Toolkit (CMTK)
16966
93
MARS (Multi-Atlas Robust Segmentation)
16141
94
ReproNim: A Center for Reproducible Neuroimaging Computation
16013
95
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
15898
96
FSL
14963
97
3DMeshMetric
14885
98
Maps4Mipav (Exploratory JIST)
14850
99
Nutil - Neuroimaging utilities
14409
100
Artifact Detection Tools (ART)
14336