Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
965515
2
Nilearn
923231
3
BIDScoin
616165
4
ITK-SNAP
463799
5
FCP/INDI PRIVATE SITE
378743
6
IIT Human Brain Atlas (v.5.0)
218649
7
fMRI-CPCA
206008
8
MRIcroGL
201444
9
CONN : functional connectivity toolbox
197700
10
1000 Functional Connectomes Project
183145
11
BrainNet Viewer
115954
12
DTI-TK
96224
13
BXH/XCEDE Tools
82503
14
IBSR
81464
15
NIDB - Neuroinformatics Database
79395
16
BioImage Suite
79004
17
age-ility
76846
18
Multi-Modal MRI Reproducibility Resource
75170
19
Waxholm Space Atlas of the Sprague Dawley Rat Brain
69854
20
WFU_PickAtlas
66311
21
Solar Eclipse Imaging Genetics tools
64308
22
JIST: Java Image Science Toolkit
62608
23
BrainFlow
58458
24
GIFTI
51980
25
PANDA: a pipeline tool for diffusion MRI
51603
26
The Neuro Bureau
50168
27
NITRC Computational Environment (NITRC-CE)
48081
28
Functional Imaging BIRN
45841
29
3T DWI test-retest reliability dataset
45616
30
TOADS-CRUISE Brain Segmentation Tools
41173
31
fNIRS Data Analysis Environment
41039
32
EEGLAB
40056
33
FreeSurfer
37986
34
Generalized PPI Toolbox
37934
35
Multimodal Visual Consciousness Study Dataset
37464
36
BrainMap Database
35586
37
QuickNII - Serial section aligner to volumetric atlases
35124
38
Network-Based Statistic (NBS)
33433
39
MIITRA atlas
31680
40
NeuroImaging Analysis Kit (NIAK)
31076
41
UNC 0-1-2 Infant Atlases
30582
42
Brain Biomechanics Imaging Resources
28856
43
Homer2
28829
44
NeuroDebian
26775
45
Anima
26511
46
NYU CSC TestRetest
26112
47
DWI/DTI Quality Control Tool: DTIPrep
26051
48
BrainVisa Morphologist extensions
26036
49
TumorSim
25673
50
XNAT Extras
24238
51
Graph Theory GLM (GTG) MATLAB Toolbox
23249
52
Melbourne Subcortex Atlas
22056
53
CBS High-Res Brain Processing Tools
22004
54
Neuroimaging Made Easy Blog
21757
55
4D UNC Neonatal and Infant Cortical Surface Atlases
21491
56
SPHARM-PDM Toolbox
21095
57
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
20768
58
Mango
19238
59
SRI24 Atlas: Normal Adult Brain Anatomy
18919
60
Data Format Tools
18819
61
Vaa3D and Vaa3D-Neuron
18610
62
Surf Ice
18525
63
Fast Nonlocal Means for MRI denoising
18466
64
Automatic Registration Toolbox
18378
65
MITK Diffusion
18290
66
BrainMask Volume Processing Tool
18219
67
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
17902
68
CANDI Neuroimaging Access Point
17850
69
GRETNA
17471
70
Group ICA Toolbox (GIFT and EEGIFT)
17347
71
Talairach Daemon
16788
72
3DSlicerLupusLesionModule
16531
73
Diffusion Toolkit / TrackVis
16403
74
Subject Order-Independent Group ICA
16295
75
3D Slicer
16180
76
Spatially Constrained Parcellation
16144
77
DCP：Diffusion Connectome Pipeline
16021
78
Awake Rat rsfMRI Database
15952
79
Freesurfer fsaverage
15791
80
Computational Morphometry Toolkit (CMTK)
15771
81
BrainSuite
15588
82
Human Imaging Database (HID)
15232
83
ShapePopulationViewer
15041
84
MRtrix
14969
85
Hammer And WML Modules for 3D Slicer
14815
86
ENIGMA-DTI pipeline
14475
87
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
14073
88
FSL
13946
89
MARS (Multi-Atlas Robust Segmentation)
13888
90
Brainstorm
13841
91
AutoSeg
13813
92
dcm2nii
13205
93
Artifact Detection Tools (ART)
13129
94
libminc - Medical Image NetCDF library
12861
95
Nighres
12444
96
ABSORB for groupwise registration
12110
97
NIfTI
12087
98
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
12075
99
Maps4Mipav (Exploratory JIST)
11984
100
Task Independent Fluctuations Discussion
11957