• Skip to main content
  • Skip to main navigation
  • Skip to user menu
  • Skip to search
  • Accessibility
N I T R C
NeuroImaging Tools and Resources Collaboratory
NITRC R
Neuroimaging Resources Registry
NITRC I R
Neuroimaging Data Repository
NITRC C E
Cloud Computing Environment
Member login | Register | Help
  • Tools & Resources
    • Browse By Attribute
    • Browse By Top Downloads
    • Compare Tools/Resources
    • Download Code Snippets
    • Image Repository
    • Register New Tool or Resource
    • Suggest a Tool or Resource
    • Suggest a Data Set
  • Community
    • Home
    • Community Forums
    • Recently Active Forums
    • Events
    • News
    • Funding
    • Career Opportunities
    • Documents
    • Wiki
  • Support
    • Contact Us
    • Feedback
    • User Guide
    • Technical Information
    • View Bug/Feature/Support Requests
    • Submit NITRC Bug
    • Submit NITRC Feature Request
    • Submit NITRC Support Request
  • About NITRC
    • About Us
    • NITRC TEAM
    • Our Partners
    • Our Web Trends
    • Our Testimonials
    • Cite NITRC
Member login | Register | Help
Advanced Search
Support NITRC. Donate Today!
NITRC Testimonial
New to NITRC? Learn more here.

Featured tool/resource

Graphic for NeuroPype

NeuroPype

NeuroPype™ is a powerful platform for real-time brain-computer interfacing, neuroimaging, and bio/neural signal processing. The NeuroPype™ Suite is a collection of applications that, in addition to NeuroPype, includes an open-source visual pipeline designer and tools for interfacing with diverse sensor hardware, recording data, and other functions.

Featured tool/resource

Graphic for Turbo-Satori

Turbo-Satori

Turbo-Satori is a real-time analysis program for functional near-infrared spectroscopy (fNIRS) data (at present only for hardware from NIRx company). While the also available Satori program is aimed at offline analysis, Turbo-Satori is optimised for real-time applications such as neurofeedback and brain computer interface (BCI) applications. The software supports online oxy/deoxy concentration value calculations from raw wavelength data and it provides advanced in-built neurofeedback options.
The program calculates and shows oxy and deoxygenated haemoglobin concentration values. These values will be used for time course displays and neurofeedback as default except in case that the “Show raw WL data” option is set explicitly. For a good channel, the oxy signal should move upward during activation while the deoxy channel should move downward; the deoxy signal (negative) amplitude should also be about 0.1-0.2 the amplitude of the oxy signal.

Featured tool/resource

Graphic for ReproRehab

ReproRehab

Data science provides an exciting opportunity to significantly improve the rigor of rehabilitation research by increasing the reproducibility and replicability of research. Data science methods, which rely on computer programming skills for data intake, management, storage, and analysis, can increase reproducibility, but clinical and basic rehabilitation researchers may have challenges adopting these practices due to a lack of fundamental training in computer programming.

Our new Reproducible Rehabilitation (ReproRehab) research education program aims to build a sustainable national workforce of rehabilitation researchers equipped with basic data science skills in five years.

Previous Next

Domain Category Expanded Category Expanded

CT (86)

Clinical Neuroinformatics (110)

Computational Neuroscience (228)

Domain Independent (145)

ECOG (13)

EEG/MEG (165)

Imaging Genomics (89)

MR (890)

Optical Imaging (64)

PET/SPECT (97)

Software Category Expanded Category Expanded

Atlas Application (47)

Connectivity Analysis (39)

Database Application (25)

Experimental Control (8)

Format Conversion (19)

Genomic Analysis (20)
Category ExpandedCategory Expanded

Next Generation Sequencing (2)

Other Omics (1)

Pathways & Networks (1)

SNP's & Genes (15)

Image Reconstruction (14)
Category ExpandedCategory Expanded

Tomography (1)

Information Theory (4)

Longitudinal Analysis (1)

Modeling (83)
Category ExpandedCategory Expanded

Finite Element Analysis (2)

Forward - Inverse (21)
Category ExpandedCategory Expanded

EEG Modeling (14)

MEG Modeling (12)

Mesh Generation (10)

Model Generation (2)

Monte Carlo (5)

Random Walk (1)

Simulation (10)

Super Tensor (6)
Category ExpandedCategory Expanded

Diffusion Spectrum (3)

Q-Ball (4)

Tensor Metric (15)
Category ExpandedCategory Expanded

Direction (1)

Neuronal Characterization (2)

Quantification (59)
Category ExpandedCategory Expanded

Morphology (11)

Overlap Metrics (5)
Category ExpandedCategory Expanded

DICE Coefficient (1)

Intersection (1)

Tanomoto Coefficient (1)

Position (5)

Quantitative Shape Analysis (7)

Stereology (1)

Volumetric Analysis (26)
Category ExpandedCategory Expanded

Center of Mass (2)

Volume Measurement (9)

Segmentation (79)
Category ExpandedCategory Expanded

Active Contour (4)

Expectation Minimization (3)

Intensity Contour (2)

KMeans (1)

Manual (6)

Neural Network (5)

Quality Metrics (4)

Region Growing (5)
Category ExpandedCategory Expanded

Constrained Region Growing (2)

Region of Interest (18)
Category ExpandedCategory Expanded

Labeling (10)

Volumetric Analysis (16)

Shape Analysis (23)
Category ExpandedCategory Expanded

Medial Axis (2)

Shape Decomposition (4)
Category ExpandedCategory Expanded

Spherical Harmonics (4)

Spatial Transformation (71)
Category ExpandedCategory Expanded

Artifact Removal (15)

Colocalization (1)

Frequency Domain (7)
Category ExpandedCategory Expanded

Filtering (4)

Fourier Transform (2)

Intensity Operations (5)
Category ExpandedCategory Expanded

Intensity Non-uniformity Correction (3)

Quality Metrics (8)

Registration (42)
Category ExpandedCategory Expanded

Fiducial (1)

Image-to-Image (22)

Image-to-Template (8)

Resampling (20)
Category ExpandedCategory Expanded

Sinc Function Interpolation (1)

Spline Interpolation (3)

Tri-linear (1)

Spatial Convolution - Deconvolution (3)

Warping (17)
Category ExpandedCategory Expanded

Affine Warp (5)

Linear Warp (1)

Nonlinear Warp (7)

Wavelet Transformation (4)

Statistical Operation (85)
Category ExpandedCategory Expanded

Discriminant Analysis (4)

Independent Component Analysis (21)

Multivariate Analysis (18)

Principal Component Analysis (15)

Regression (25)
Category ExpandedCategory Expanded

Linear (15)

Nonlinear (3)

Surface Analysis (27)
Category ExpandedCategory Expanded

Curvature (3)
Category ExpandedCategory Expanded

Gaussian Curvature (2)

Mean Curvature (3)

Thickness (8)

Temporal Transformation (35)
Category ExpandedCategory Expanded

Fourier Time-domain Analysis (9)

Motion Analysis (5)

Spectral Analysis (15)

Temporal Convolution - Deconvolution (2)

Temporal Curve Fitting (3)
Category ExpandedCategory Expanded

Haemodynamic Response (3)

Temporal Integration (1)

Temporal Wavelet Analysis (3)

Time Domain Analysis (37)
Category ExpandedCategory Expanded

ANOVA (2)

Correlation (6)
Category ExpandedCategory Expanded

Autocorrelation (1)

Cross-correlation (3)

Tractography (50)
Category ExpandedCategory Expanded

Fiber Tracking (29)
Category ExpandedCategory Expanded

Diffusion MR Fiber Tracking (23)

Visualization (125)
Category ExpandedCategory Expanded

Animation (14)

Image Display (58)
Category ExpandedCategory Expanded

Clipping (5)

Three Dimensional Display (31)

Two Dimensional Display (24)

Rendering (42)
Category ExpandedCategory Expanded

Surface Rendering (32)

Volume Rendering (16)

Workflow (53)

Data Category Expanded Category Expanded

Atlas Data (36)

Data (65)

Database (44)

Test Data (8)

Diagnosis Category Expanded Category Expanded

Agnosia (34)

Amyotrophic Lateral Sclerosis (94)

Anorexia Nervosa (41)

Aphasia (75)

Apraxias (23)

Asperger Syndrome (26)

Ataxia (65)

Attention Deficit Disorder with Hyperactivity (162)

Autistic Disorder (150)

Bell Palsy (6)

Bipolar Disorder (154)

Brain Concussion (54)

Brain Injuries (176)

Bulimia (22)

Child Development Disorders, Pervasive (120)

Crohn Disease (39)

Dementia (292)
Category ExpandedCategory Expanded

AIDS Dementia Complex (23)

Alzheimer Disease (278)

Creutzfeldt-Jakob Syndrome (23)

Dementia, Multi-Infarct (1)

Depression (206)

Diabetes Mellitus (165)

Dyslexia (85)

Epilepsy (205)

Headache Disorders, Primary (62)
Category ExpandedCategory Expanded

Migraine Disorders (61)

Holoprosencephaly (3)

Huntington Disease (77)

Hydrocephalus (50)

Hypertension (137)

Landau-Kleffner Syndrome (3)

Lymphoma, Non-Hodgkin (30)

Multiple Sclerosis (164)

Muscular Dystrophies (21)

Neurofibromatosis 1 (23)

Obsessive-Compulsive Disorder (81)

Parkinson Disease (192)

Rett Syndrome (13)

Schizophrenia (246)

Stroke (223)

Substance-Related Disorders (151)
Category ExpandedCategory Expanded

Alcohol-Related Disorders (24)

Cocaine-Related Disorders (75)

Tobacco Use Disorder (54)

Tourette Syndrome (39)

Typically Developing (2)

Education Category Expanded Category Expanded

Course (3)

Multi-Media (2)

Tutorial (5)

Workshop (2)

Latest News

  • Mar 15

    CONN new release

    CONN : functional connectivity toolbox

    no comments

  • Mar 8

    Resting State Dataset released

    NeuroDOT

    no comments

  • Mar 1

    Macromolecular aging spectra 3T R01 v1.0 released

    Macromolecular aging spectra 3T

    no comments

  • Feb 23

    Advancing Software Citation Implementation

    NITRC Community

    no comments

  • Feb 15

    NITRC Follows the 9 Best Practices for Research Repositories

    NITRC Community

    no comments

  • Feb 1

    VDB2.0 release

    Virtual digital brain

    no comments

  • Jan 23

    EAGLE Vestibular Atlas Compilation PUBLIC release

    Eagle Atlas Compilation for Vestibular Research

    no comments

more

Calendar

  • Mar 28

    AD/PD™ 2022 International Conference on Alzheimer's and Parkinson's Diseases and related neurological disorders

  • Apr 21

    2023 USA Brain Bee Championship

  • Apr 23

    The Brain Conference: Establishment and Maintenance of Brain Cell States

  • Apr 23

    The Brain Conference: Establishment and Maintenance of Brain Cell States

  • May 3

    FRM 2023 FENS Regional Meeting

  • May 13

    World Congress on Parkinson's Disease and Related Disorders

  • Jul 1

    9th Congress of the European Academy of Neurology

  • Oct 15

    WCN 2023 World Congress of Neurology

more

Updated Files

  • Mar 17

    GitHub_Releases: v0.3.26 (v0.3.26)

  • Mar 15

    miitra: Version 2 (MIITRA 0.5mm resources)

  • Mar 11

    dcp2.0: DCP2

more

Registered

1,296 tools
  • 14 hours ago

    Cell Type Knowledge Explorer

  • Mar 15

    Automated Fiber Quantification in Python

  • Feb 9

    LocaliZoom - the companion web application for QuickNII and online counterpart for VisuAlign

  • Feb 1

    Mozak: Brain Builder

more

Community

53,877 registered users
  • General community forum

  • Funding opportunities

  • Sustaining NITRC

  • Submit community news

  • Submit tool/resource

  • Publications

  • Conferences and workshops

  • Career opportunities

more

Active Forums

  • CONN : functional connectivity toolbox

    RE: update ROI names

    13026 posts, last post 11 minutes ago

  • Network-Based Statistic (NBS)

    repeated measures ANOVA + covariate

    1134 posts, last post 4 hours ago

  • Seed-based d Mapping (SDM, formerly Signed Differential Mapping)

    RE: IBMA with statistical maps - set-up questions

    1205 posts, last post 10 hours ago

more

v2.1.63-0

Feedback
Privacy
Accessibility
Copyright
Glossary
Site Map

National Institutes of HealthFunded by NIH Grant number: 5R24EB029173