Featured tool/resource
Neurodesk
Neurodesk provides a containerised data analysis environment to facilitate reproducible analysis of neuroimaging data.
The Neurodesk platform includes a browser-accessible Linux desktop environment integrated into Jupyterlab, a cross-platform desktop client and a command line interface. These mediate access to the containerised Neurodesk software libraries from a variety of systems, including personal computers, cloud computing, high-performance computers, and computational notebooks.
To find out how to get started visit: https://www.neurodesk.org/
Featured tool/resource
The Data Management and Sharing Project
This project is a clearinghouse and community meeting place to collect and disseminate resources and knowledge related to supporting researchers in preparing and executing their Data Management and Sharing Plans. An overview is provided in the MediaWiki of this project: https://www.nitrc.org/plugins/mwiki/inde...
We value and encourage the community's input and suggestions to add to this project.
Featured tool/resource
Locus Coeruleus Manual Labels for 20 HCP Subjects
This dataset contains locus coeruleus (LC) labels for the first 20 subjects of the "100 Unrelated Subjects" group of the Human Connectome Project, as described by Aganj et al (Front. Neurosci. 2024). The LC labels were manually delineated on preprocessed 3-Tesla T1-weighted MPRAGE magnetic resonance images based on geometry (rather than contrast).
Featured tool/resource
eeg_pipelines
This repository contains 4 stand-alone pipelines (along with one test dataset), in EEGLAB, Fieldtrip, Brainstorm, and MNE. There is also a link to the HAPPE EEGLAB-based pipeline. The pipelines have been optimized to process event-related potential and are described in the associated manuscript. All pipelines run on the sample data provided although they do require a separate installation of the corresponding software packages.
Based on our scanning of the hyperparameter space for artifact rejection and preprocessing, these are the best automated EEG pipelines for EEGLAB, Fieldtrip, Brainstorm, and MNE to process ERP. Test them yourself by plugging in your data.
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CONN : functional connectivity toolbox
Choosing number of clusters in CONN's HCA
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