Featured tool/resource
Brain Imaging Data Structure
Neuroimaging experiments result in complicated data that can be arranged in many different ways. So far there is no consensus how to organize and share data obtained in neuroimaging experiments. Even two researchers working in the same lab can opt to arrange their data in a different way. Lack of consensus (or a standard) leads to misunderstandings and time wasted on rearranging data or rewriting scripts expecting certain structure. Here we describe a simple and easy to adopt way of organizing neuroimaging and behavioral data.
Featured tool/resource
GIN: G-Node Infrastructure Services
The goal of the GIN project is to develop a free data management system designed for comprehensive and reproducible management of scientific data. It keeps track of changes to the contents and organization of the files and provides secure remote access to the data. With proper authorization, data stored on GIN can be accessed and changed remotely, making it easy to work from multiple workplaces while keeping all data at hand and in sync. The system handles any kinds of directory structures and file types, and tracks all changes. The service furthermore makes it straightforward to share any data within a lab or with off-site collaborators and to work on it in parallel. Any GIN repository hosted on the official GIN service can be permanently archived (at a given point in time) and referenced by a unique Digital Object Identifier (DOI). The GIN service is based on the Gogs Git service. The data versioning, storage, and synchronisation part of the project is built on git and git-annex.
Featured tool/resource
Turone Mouse Brain Template and Atlas
The Turone Mouse Brain Template and Atlas (TMBTA) resources offer to the preclinical neuroimaging community a complete set of ex vivo template, tissues priors as well as anatomical atlas of the mouse brain. This new set of resources allows both linear and non-linear coregistration of multimodal acquisitions performed on the same animal (functional, anatomical and diffusion), leading to an accurate identification of the brain territories involved in a physiological or pathophysiological process. The TMBTA is a support for the standardization of MRI preclinical research.
Featured tool/resource
NeuralAct
NeuralAct is a tool to visualize cortical activity on a 3D model of the cortex. It runs under Matlab, is stable, robust, and well documented. To visualize neural activations, NeuralAct takes as input the 3D coordinates of the recording sensors, a cortical model in the same coordinate system, and the activation data to be visualized at each sensor. It then aligns the sensor coordinates with the cortical model, convolves the activation data with a spatial kernel, and renders the resulting activations in color on the cortical model. NeuralAct can plot cortical activations of an individual subject as well as activations averaged over subjects. It is capable to render single images as well as activation videos.
Domain
Software
Data
Diagnosis
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May 22
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May 13
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May 8
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May 6
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Apr 30
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Jun 7
Nengo Summer School
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Jun 8
ExploreDTI Workshop
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Jun 26
2020 OHBM Annual Meeting
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Aug 3
FSCI 2020
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Aug 17
Neuroinformatics 2020
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18 hours ago
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Jun 3
Registered
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Jun 5
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Jun 5
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Jun 3
Community
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CONN : functional connectivity toolbox
Aligning Subject Specific Anatomical and Functional Scans without Normalization
9203 posts, last post 2 hours ago
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Computational Morphometry Toolkit (CMTK)
RE: Register volumes of labels
710 posts, last post 4 hours ago
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RE: Going the other way: Converting from nii.gz to DICOM
274 posts, last post 9 hours ago