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Featured tool/resource

Graphic for SigViewer

SigViewer

SigViewer is a viewing application for biosignals such as EEG or MEG time series. In addition to viewing raw data, SigViewer can also create, edit, and display event information (such as annotations or artifact selections). SigViewer supports many different biosignal data formats (including GDF, EDF, CNT, EEG, and many more). SigViewer also features basic signal processing modules such as computing the average over selected epochs (yielding event-related potentials) and power spectral densities of selected signals. SigViewer is written in standard C++ using the cross-platform graphical user interface (GUI) toolkit Qt. SigViewer is open source and available for all three major platforms (Windows, Mac OS X, and Linux). The application is licensed under the GNU GPL.

Featured tool/resource

Graphic for BrainVoyager EDU

BrainVoyager EDU

The freely available educational version of BrainVoyager (“BrainVoyager EDU”) allows anyone to learn how to analyse structural and functional MRI datasets using the powerful computational tools and visualization features of the commercial BrainVoyager product.
BrainVoyager EDU is a fully functional version of BrainVoyager but operations are limited to specific source files, referred to as “enabled datasets”.
These enabled datasets are accompanied by extensive tutorials describing step-by-step how to analyse structural and functional MRI data with BrainVoyager. At present there are two bundled documents (“Basic Visualizations using Brain Tutor Data” and the “Getting Started Guide”) and more will be added over time. Processing of enabled datasets is not limited in any way, i.e. the data can be processed using any BrainVoyager tool, and nearly any plugin or script.

Featured tool/resource

Graphic for Osprey: Open-source processing, reconstruction & estimation of magnetic resonance spectroscopy data

Osprey: Open-source processing, reconstruction & estimation of magnetic resonance spectroscopy data

Osprey is an all-in-one software suite for state-of-the art processing and quantitative analysis of in-vivo magnetic resonance spectroscopy (MRS) data.

### Features
- 1-file job definition system for reproducible data analysis
- Automated recognition of input file format and sequence origin
- Fully-automated loading and pre-processing pipeline for optimal SNR, linewidth, phasing, and alignment
- Integrated linear-combination modeling module
- Full density-matrix simulated basis sets
- Functions to create custom basis sets and import basis sets from LCModel or Tarquin
- Integrated voxel co-registration and segmentation module (requires SPM12)
- Quantification based on tissue fractions and (customizable) metabolite/tissue water relaxation times
- GUI to display data, quality assessment, and quantitative results at each step of the analysis
- Rich 'Overview' GUI panel for batched datasets to visualize distributions of metabolite estimates and mean +/- SD spectra

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Latest News

  • Sep 20

    SOCK version 1.4e released

    SOCK

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  • Sep 1

    Minor Update

    CLIMB Lesion Symptom Mapping Software

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  • Aug 22

    NBS-Predict v1.0.0-beta.11 released

    NBS-Predict: A Prediction-based Extension of the Network-based Statistic

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  • Aug 15

    NIRS-KIT V3.0 Beta released with several major improvements

    NIRS-KIT: A MATLAB toolbox for both task and resting-state fNIRS data analysis

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  • Aug 1

    PhysIO Toolbox R2022a-v8.1.0 released

    PhysIO Toolbox

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  • Jul 24

    ASHS-T1 atlas with white matter label

    ASHS: Automatic Segmentation of Hippocampal Subfields

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  • Jul 21

    Visit NITRC at OHBM Booth 303 in Montreal!

    NITRC Community

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Calendar

  • Oct 3

    Neurobiology of Drosophila

  • Oct 3

    OSF Tracking and Reporting Funded Research Plans and Outcomes

  • Oct 4

    COS: Global Flourishing Study Randomized Trial: Examining the Impact of Registered Reports and Preregistration

  • Oct 10

    COS: Utilizing Preregistration Workflows on the OSF

  • Oct 10

    Fundamentals and Applications of TUS

  • Oct 10

    Fundamentals and Applications of TUS

  • Oct 11

    COS: Tracking and Reporting Research Plans and Outcomes From My Institution

  • Oct 15

    WCN 2023 World Congress of Neurology

  • Oct 17

    COS: Open Scholarship Workflows and Project Use-Cases for Support Staff at Research Organizations

  • Oct 18

    COS: Getting Started on OSF

  • Oct 18

    The Brain Conference: Structuring Knowledge for Flexible Behaviour

  • Oct 26

    ISMRM-SNMMI Co-Provided Workshop on PET/MRI

  • Nov 8

    7th International Conference on Neurology and Brain Disorders

  • Nov 11

    Neuroscience 2023

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    23rd World Congress on Pediatric Neurology and Neuropathology

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    Zebrafish Neurobiology

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    3rd International Conference on Neuroscience and Psychiatry

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    Global Congress on Central Nervous System

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    Subcortical sensory circuits: Visual, auditory, somatosensory, and beyond

  • Nov 30

    3rd International Conference on Cardiology (Hybrid Event)

  • Dec 2

    Cell Bio 2023

  • Dec 8

    2023 World Neuroscience And Psychiatry Conference Bangkok

  • Dec 13

    ExploreDTI Workshop

  • Jan 17

    TOXINS 2024 7th International Conference

  • Feb 5

    Advanced Neuroimaging Techniques Course

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    2nd European Congress of Neurology and Neuropsychiatry

  • Feb 28

    Cancer Neuroscience Symposium

  • Mar 4

    ABCD Insights and Innovations Meeting (AIIM)

  • Mar 9

    2024 World Endocrine, Diabetes & Cardiovascular Conference

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Updated Files

  • Sep 29

    miitra: Manual

  • Sep 22

    NITRC GForge Extensions: v2.1.66

  • Sep 12

    INI32 Orbit CT: 20230912

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Registered

1,311 tools
  • Sep 14

    VUIIS - 3T - Functional Contrasts - Resting/MotorStim/SensoryStim/Visual

  • Sep 6

    Synesthesia HCP (Human Connectome Project) Dataset

  • Sep 5

    Statistical Power Tool for Whole Brain Connectome (BNPower)

  • Aug 29

    Neurodesk

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Active Forums

  • Seed-based d Mapping (SDM, formerly Signed Differential Mapping)

    RE: SDM-PSI is not operational.

    1273 posts, last post 12 hours ago

  • dcm2nii

    RE: Recommendations for Converting Composed Abdomen MR DICOM with Inconsistent Slice Spacing to NIfTI

    811 posts, last post 16 hours ago

  • CONN : functional connectivity toolbox

    How to run analysis in a specific ammount of volumes from the .nii files?

    13788 posts, last post 17 hours ago

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