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Frequently Asked Questions
Description: Here are answers to some common questions you might have.
Updated: Sep 6, 2013
LDDMM Manual
Description: LDDMM Manual
Updated: Sep 6, 2013
LDDMM-Volume
Description: LDDMM-Volume Software Documentation
Updated: Mar 24, 2008
Tutorial
Description: This tutorial will contain the basic architecture of the software.
Updated: Sep 6, 2013
PubMed Mentions ( 16 )+
Bayesian Parameter Estimation and Segmentation in the Multi-Atlas Random Orbit Model.
Description: Tang, Xiaoying, et al. Bayesian Parameter Estimation and Segmentation in the Multi-Atlas Random Orbit Model. ''PLoS One''. 2013; '''8''' (6):e65591
Updated: Sep 21, 2019
An area essential for linking word meanings to word forms: evidence from primary progressive aphasia.
Description: Race, D S, et al. An area essential for linking word meanings to word forms: evidence from primary progressive aphasia. ''Brain Lang''. 2013 Nov; '''127''' (2):167-76
Updated: Sep 21, 2019
Segmentation of brain magnetic resonance images based on multi-atlas likelihood fusion: testing using data with a broad range of anatomical and photometric profiles.
Description: Tang, Xiaoying, et al. Segmentation of brain magnetic resonance images based on multi-atlas likelihood fusion: testing using data with a broad range of anatomical and photometric profiles. ''Front Neurosci''. 2015; '''9''': 61
Updated: Sep 21, 2019
The diffeomorphometry of regional shape change rates and its relevance to cognitive deterioration in mild cognitive impairment and Alzheimer's disease.
Description: Tang, Xiaoying, et al. The diffeomorphometry of regional shape change rates and its relevance to cognitive deterioration in mild cognitive impairment and Alzheimer's disease. ''Hum Brain Mapp''. 2015 Jun; '''36''' (6):2093-117
Updated: Sep 21, 2019
Characterization of Behavioral, Neuropathological, Brain Metabolic and Key Molecular Changes in zQ175 Knock-In Mouse Model of Huntington's Disease.
Description: Peng, Qi, et al. Characterization of Behavioral, Neuropathological, Brain Metabolic and Key Molecular Changes in zQ175 Knock-In Mouse Model of Huntington's Disease. ''PLoS One''. 2016; '''11''' (2):e0148839
Updated: Sep 21, 2019
Atlas pre-selection strategies to enhance the efficiency and accuracy of multi-atlas brain segmentation tools.
Description: Ye, Chenfei, et al. Atlas pre-selection strategies to enhance the efficiency and accuracy of multi-atlas brain segmentation tools. ''PLoS One''. 2018; '''13''' (7):e0200294
Updated: Sep 21, 2019
Statistical Shape Analysis of Large Datasets Based on Diffeomorphic Iterative Centroids.
Description: Cury, Claire, et al. Statistical Shape Analysis of Large Datasets Based on Diffeomorphic Iterative Centroids. ''Front Neurosci''. 2018; '''12''': 803
Updated: Sep 21, 2019
On variational solutions for whole brain serial-section histology using a Sobolev prior in the computational anatomy random orbit model.
Description: Lee, Brian C, et al. On variational solutions for whole brain serial-section histology using a Sobolev prior in the computational anatomy random orbit model. ''PLoS Comput Biol''. 2018 Dec; '''14''' (12):e1006610
Updated: Sep 21, 2019
Spatiotemporal analysis for detection of pre-symptomatic shape changes in neurodegenerative diseases: Initial application to the GENFI cohort.
Description: Cury, Claire, et al. Spatiotemporal analysis for detection of pre-symptomatic shape changes in neurodegenerative diseases: Initial application to the GENFI cohort. ''Neuroimage''. 2019 Mar; '''188''': 282-290
Updated: Sep 21, 2019
Abnormal Brain Development in Huntington' Disease Is Recapitulated in the zQ175 Knock-In Mouse Model.
Description: Zhang, Chuangchuang, et al. Abnormal Brain Development in Huntington' Disease Is Recapitulated in the zQ175 Knock-In Mouse Model. ''Cereb Cortex Commun''. 2020; '''1''' (1):tgaa044
Updated: Oct 17, 2020
Developmental Differences of Structural Connectivity and Effective Connectivity in Semantic Judgments of Chinese Characters.
Description: Fan, Li-Ying, et al. Developmental Differences of Structural Connectivity and Effective Connectivity in Semantic Judgments of Chinese Characters. ''Front Hum Neurosci''. 2020; '''14''': 233
Updated: Aug 29, 2020
Entorhinal and Transentorhinal Atrophy in Preclinical Alzheimer's Disease.
Description: Kulason, Sue, et al. Entorhinal and Transentorhinal Atrophy in Preclinical Alzheimer's Disease. ''Front Neurosci''. 2020; '''14''': 804
Updated: Oct 17, 2020
Subcortical structural variations associated with low socioeconomic status in adolescents.
Description: Jenkins, Lisanne M, et al. Subcortical structural variations associated with low socioeconomic status in adolescents. ''Hum Brain Mapp''. 2020 Jan; '''41''' (1):162-171
Updated: Jul 18, 2020
Striatal shape alteration as a staging biomarker for Parkinson's Disease.
Description: Peralta, Maxime, et al. Striatal shape alteration as a staging biomarker for Parkinson's Disease. ''Neuroimage Clin''. 2020 May 19; '''27''': 102272
Updated: Jun 20, 2020
Down-sampling template curve to accelerate LDDMM-curve with application to shape analysis of the corpus callosum.
Description: Huang, Weikai, et al. Down-sampling template curve to accelerate LDDMM-curve with application to shape analysis of the corpus callosum. ''Healthc Technol Lett''. 2021 Jun; '''8''' (3):78-83
Updated: Jun 19, 2021
Virtual mouse brain histology from multi-contrast MRI via deep learning.
Description: Liang, Zifei, et al. Virtual mouse brain histology from multi-contrast MRI via deep learning. ''Elife''. 2022 Jan 28; '''11''':
Updated: Mar 12, 2022