dke-questions
dke-questions > RE: error on dke_ft start...
Nov 16, 2015 11:11 PM | Russell Glenn - Medical University of South Carolina
RE: error on dke_ft start...
Hi Ehsan,
I apologize for the long processing times. Hopefully we will continue to improve the computational efficiency of DKE in the future. Right now we're limited because the source code is written in Matlab. I have gotten the processing times down to around 10 mins for many of my datasets, but this is both platform and dataset specific.
I would disregard the second error. In computation of the kurtosis dODF, the diffusion tensor must be inverted, and this error occurs when the diffusion tensor is degenerate, which may occur in the image background and periphery of the image where the diffusion signal is largely noise. This should not happen within the brain volume.
I am unsure what the cause of your first error could be. This could occur as the result of a permissions error in your local environment but I doubt this is the case. I am happy to take a look at your data if you like and see if I can diagnose this further. If this is ok with you you could upload the DT.mat, KT.mat, and fa.nii files somewhere? These files are fully anonymized and contain no identifiable info. Just an option...
Best,
Russell
I apologize for the long processing times. Hopefully we will continue to improve the computational efficiency of DKE in the future. Right now we're limited because the source code is written in Matlab. I have gotten the processing times down to around 10 mins for many of my datasets, but this is both platform and dataset specific.
I would disregard the second error. In computation of the kurtosis dODF, the diffusion tensor must be inverted, and this error occurs when the diffusion tensor is degenerate, which may occur in the image background and periphery of the image where the diffusion signal is largely noise. This should not happen within the brain volume.
I am unsure what the cause of your first error could be. This could occur as the result of a permissions error in your local environment but I doubt this is the case. I am happy to take a look at your data if you like and see if I can diagnose this further. If this is ok with you you could upload the DT.mat, KT.mat, and fa.nii files somewhere? These files are fully anonymized and contain no identifiable info. Just an option...
Best,
Russell
Threaded View
| Title | Author | Date |
|---|---|---|
| Riccardo Navarra | Nov 10, 2015 | |
| Ehsan Misaghi | Nov 17, 2015 | |
| Russell Glenn | Nov 18, 2015 | |
| Ehsan Misaghi | Nov 18, 2015 | |
| Russell Glenn | Nov 18, 2015 | |
| Ehsan Misaghi | Nov 23, 2015 | |
| Russell Glenn | Nov 24, 2015 | |
| Ehsan Misaghi | Nov 29, 2015 | |
| Ehsan Misaghi | Nov 18, 2015 | |
| Ehsan Misaghi | Nov 16, 2015 | |
| Russell Glenn | Nov 16, 2015 | |
| Russell Glenn | Nov 11, 2015 | |
| Riccardo Navarra | Nov 11, 2015 | |
| Russell Glenn | Nov 11, 2015 | |
| Riccardo Navarra | Nov 12, 2015 | |
| Russell Glenn | Nov 12, 2015 | |
