dke-questions
dke-questions > RE: 'error using dke (line 47)' with Bruker f
Aug 15, 2017 08:08 AM | Kirk Feindel - University of Western Australia
RE: 'error using dke (line 47)' with Bruker f
Hi Clementine,
Unfortunately the error codes are pretty non-specific!
Have you looked at the FAQ section:
http://academicdepartments.musc.edu/cbi/...
and the previous posts in this forum regarding Bruker data? There are a few changes to the parameters file that need to be made, and the Bruker method file needs to be copied forward to the same folder containing the 2dseq file (I think).
Otherwise, all I can suggest is providing a copy of your dataset in the native Bruker folder structure, and we can try to run it through DKE.
Usually, I open my 2dseq using DSI Studio, save the 4D nifti and bvecs it generates, and then use those to generate the input for DKE. The bvecs from DSI Studio will be reordered (as per the images) according to increasing b-value, so you need to then chop up the bvecs into e.g, b1000 and b2000 for input into DKE.
Cheers,
Kirk
Unfortunately the error codes are pretty non-specific!
Have you looked at the FAQ section:
http://academicdepartments.musc.edu/cbi/...
and the previous posts in this forum regarding Bruker data? There are a few changes to the parameters file that need to be made, and the Bruker method file needs to be copied forward to the same folder containing the 2dseq file (I think).
Otherwise, all I can suggest is providing a copy of your dataset in the native Bruker folder structure, and we can try to run it through DKE.
Usually, I open my 2dseq using DSI Studio, save the 4D nifti and bvecs it generates, and then use those to generate the input for DKE. The bvecs from DSI Studio will be reordered (as per the images) according to increasing b-value, so you need to then chop up the bvecs into e.g, b1000 and b2000 for input into DKE.
Cheers,
Kirk
Threaded View
| Title | Author | Date |
|---|---|---|
| Clementine Lesbats | Aug 14, 2017 | |
| Clementine Lesbats | Aug 30, 2017 | |
| Kirk Feindel | Aug 31, 2017 | |
| Clementine Lesbats | Aug 31, 2017 | |
| Clementine Lesbats | Aug 29, 2017 | |
| Kirk Feindel | Aug 30, 2017 | |
| Clementine Lesbats | Aug 22, 2017 | |
| Kirk Feindel | Aug 15, 2017 | |
| Clementine Lesbats | Aug 15, 2017 | |
