dke-questions > RE: After using Matlab to change DICOM sequence name, new problem appear while running DKE
Apr 29, 2018  02:04 PM | Xinman Liu
RE: After using Matlab to change DICOM sequence name, new problem appear while running DKE
Hi, Emilie.
You are right, I did make a mistake. So I revise the command as following, and it did work. The previous problem has been solved.
% info=dicominfo('1.3.12.2.1107.5.2.32.35420.2018010410543453162206454');
% info.SequenceName = '*ep_b0';
dbstop if error

filenames = dir('*.dcm');
X =dicomread(filenames(1).name);
info = dicominfo(filenames(1).name);
info.SequenceName = '*ep_b0';
fname= strcat('test',num2str(1), '.dcm');
dicomwrite(X, fname ,info)
for i = 2: size(filenames,1)
X =dicomread(filenames(i).name);
info = dicominfo(filenames(i).name);
info.SequenceName = strcat('*ep_b1000#',num2str(i-1));
% fname= ['./result/',info.MediaStorageSOPInstanceUID, '.dcm'];
fname= strcat('test',num2str(i), '.dcm');
dicomwrite(X, fname ,info)
end

but then there's only one problem remaining, which is
 command line: dke DKEParameters.dat
Diffusional Kurtosis Estimator (DKE) version 2.6.0, February 2015
Start date and time: April 29, 2018 16:38:36
Diffusional Kurtosis Estimator (DKE) version 2.6.0
Converting input DICOM images to NIfTI... complete.
Co-registering images...
Error using spm_hist2
Wrong number of dims (1).

Error in spm_coreg>optfun (line 165)
Error in spm_coreg (line 88)
Error in spm_powell (line 27)
Error in spm_coreg (line 143)
Error in dke_preprocess_dicom>coregister (line 207)
Error in dke_preprocess_dicom (line 78)
Reading input images... Error using dke_estimate (line 165)
Input NIfTI image F:\P10\intermediate_processing\combined\rdki does not exist!
Error in dke (line 182)

[color=#000000]So I think this is the only problem that is left. Do you have any clues about it?[/color]
[color=#000000]Best regards,[/color]
[color=#000000]Xinman
[/color]

Threaded View

TitleAuthorDate
Xinman Liu Apr 27, 2018
Kirk Feindel Apr 27, 2018
Xinman Liu Apr 29, 2018
Emilie McKinnon Apr 27, 2018
RE: After using Matlab to change DICOM sequence name, new problem appear while running DKE
Xinman Liu Apr 29, 2018
David Lewis May 2, 2018
David Lewis May 2, 2018
Xinman Liu May 3, 2018
David Lewis May 3, 2018
Xinman Liu May 4, 2018
Emilie McKinnon May 4, 2018
Xinman Liu May 5, 2018
Xinman Liu May 3, 2018
David Lewis May 3, 2018