Hi Dave,

Thanks for your reply.

I managed to run one analysis for one of the id's in the study by writing:

./dke /home/eikeliv/Documents/MILD_TBI_DKE/d1_1001/d1_1001.dat

And by writing this command:

./run_dke.sh usr/local/MATLAB/MATLAB_Compiler_Runtime/v717 /home/eikeliv/Documents/MILD_TBI_DKE/d1_1001/d1_1001.dat

Can I use both these commands?

However, I still dont understand how I can perform analysis in batch mode. I tried making the following script:

#!/bin/bash

for i in 'cat id_mTBI.txt'
do
./dke /home/eikeliv/Documents/MILD_TBI_DKE/${i}/${i}.dat
done

But that does not work.

Best,
Live